// Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. // // SPDX-License-Identifier: BSD-2-Clause // // This file is part of CEED: http://github.com/ceed #ifndef libceed_fluids_examples_navier_stokes_h #define libceed_fluids_examples_navier_stokes_h #include #include #include #include "./include/petsc_ops.h" #include "qfunctions/newtonian_types.h" #include "qfunctions/stabilization_types.h" #if PETSC_VERSION_LT(3, 20, 0) #error "PETSc v3.20 or later is required" #endif #if PETSC_VERSION_LT(3, 21, 0) #define DMSetCoordinateDisc(a, b, c) DMProjectCoordinates(a, b) #endif #define PetscCallCeed(ceed, ...) \ do { \ int ierr = __VA_ARGS__; \ if (ierr != CEED_ERROR_SUCCESS) { \ const char *error_message; \ CeedGetErrorMessage(ceed, &error_message); \ SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "%s", error_message); \ } \ } while (0) // ----------------------------------------------------------------------------- // Enums // ----------------------------------------------------------------------------- // Translate PetscMemType to CeedMemType static inline CeedMemType MemTypeP2C(PetscMemType mem_type) { return PetscMemTypeDevice(mem_type) ? CEED_MEM_DEVICE : CEED_MEM_HOST; } // Euler - test cases typedef enum { EULER_TEST_ISENTROPIC_VORTEX = 0, EULER_TEST_1 = 1, EULER_TEST_2 = 2, EULER_TEST_3 = 3, EULER_TEST_4 = 4, EULER_TEST_5 = 5, } EulerTestType; static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", "EulerTestType", "EULER_TEST_", NULL}; // Advection - Wind types static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; // Advection - Initial Condition Types static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL}; // Advection - Bubble Continuity Types static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; // Stabilization methods static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; // Test mode type typedef enum { TESTTYPE_NONE = 0, TESTTYPE_SOLVER = 1, TESTTYPE_TURB_SPANSTATS = 2, TESTTYPE_DIFF_FILTER = 3, } TestType; static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; // Subgrid-Stress mode type typedef enum { SGS_MODEL_NONE = 0, SGS_MODEL_DATA_DRIVEN = 1, } SGSModelType; static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; // Mesh transformation type typedef enum { MESH_TRANSFORM_NONE = 0, MESH_TRANSFORM_PLATEMESH = 1, } MeshTransformType; static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; static const char *const DifferentialFilterDampingFunctions[] = { "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; // ----------------------------------------------------------------------------- // Log Events // ----------------------------------------------------------------------------- extern PetscLogEvent FLUIDS_CeedOperatorApply; extern PetscLogEvent FLUIDS_CeedOperatorAssemble; extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal; extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal; PetscErrorCode RegisterLogEvents(); // ----------------------------------------------------------------------------- // Structs // ----------------------------------------------------------------------------- // Structs declarations typedef struct AppCtx_private *AppCtx; typedef struct CeedData_private *CeedData; typedef struct User_private *User; typedef struct Units_private *Units; typedef struct SimpleBC_private *SimpleBC; typedef struct Physics_private *Physics; // Application context from user command line options struct AppCtx_private { // libCEED arguments char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend PetscInt degree; PetscInt q_extra; // Solver arguments MatType amat_type; PetscBool pmat_pbdiagonal; // Post-processing arguments PetscInt checkpoint_interval; PetscInt viz_refine; PetscInt cont_steps; PetscReal cont_time; char cont_file[PETSC_MAX_PATH_LEN]; char cont_time_file[PETSC_MAX_PATH_LEN]; char output_dir[PETSC_MAX_PATH_LEN]; PetscBool add_stepnum2bin; PetscBool checkpoint_vtk; // Problem type arguments PetscFunctionList problems; char problem_name[PETSC_MAX_PATH_LEN]; // Test mode arguments TestType test_type; PetscScalar test_tol; char test_file_path[PETSC_MAX_PATH_LEN]; // Turbulent spanwise statistics PetscBool turb_spanstats_enable; PetscInt turb_spanstats_collect_interval; PetscInt turb_spanstats_viewer_interval; PetscViewer turb_spanstats_viewer; PetscViewerFormat turb_spanstats_viewer_format; // Wall forces struct { PetscInt num_wall; PetscInt *walls; PetscViewer viewer; PetscViewerFormat viewer_format; PetscBool header_written; } wall_forces; // Subgrid Stress Model SGSModelType sgs_model_type; PetscBool sgs_train_enable; // Differential Filtering PetscBool diff_filter_monitor; MeshTransformType mesh_transform_type; }; // libCEED data struct struct CeedData_private { CeedVector x_coord, q_data; CeedBasis basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur, basis_xc_sur; CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; CeedOperator op_setup_vol; OperatorApplyContext op_ics_ctx; CeedQFunction qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow, qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian; }; typedef struct { DM dm; PetscSF sf; // For communicating child data to parents OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; PetscInt num_comp_stats; Vec Child_Stats_loc, Parent_Stats_loc; KSP ksp; // For the L^2 projection solve CeedScalar span_width; // spanwise width of the child domain PetscBool do_mms_test; OperatorApplyContext mms_error_ctx; CeedContextFieldLabel solution_time_label, previous_time_label; } SpanStatsData; typedef struct { DM dm; PetscInt num_comp; OperatorApplyContext l2_rhs_ctx; KSP ksp; } *NodalProjectionData; typedef struct { DM dm_sgs; PetscInt num_comp_sgs; OperatorApplyContext op_nodal_evaluation_ctx, op_sgs_apply_ctx; CeedVector sgs_nodal_ceed; } *SgsDDData; typedef struct { DM dm_dd_training; PetscInt num_comp_dd_inputs, write_data_interval; OperatorApplyContext op_training_data_calc_ctx; NodalProjectionData filtered_grad_velo_proj; size_t training_data_array_dims[2]; PetscBool overwrite_training_data; } *SGS_DD_TrainingData; typedef struct { DM dm_filter; PetscInt num_filtered_fields; CeedInt *num_field_components; PetscInt field_prim_state, field_velo_prod; OperatorApplyContext op_rhs_ctx; KSP ksp; PetscBool do_mms_test; } *DiffFilterData; typedef struct { void *client; char rank_id_name[16]; PetscInt collocated_database_num_ranks; } *SmartSimData; // PETSc user data struct User_private { MPI_Comm comm; DM dm; DM dm_viz; Mat interp_viz; Ceed ceed; Units units; Vec M_inv, Q_loc, Q_dot_loc; Physics phys; AppCtx app_ctx; CeedVector q_ceed, q_dot_ceed, g_ceed, coo_values_amat, coo_values_pmat, x_ceed; CeedOperator op_rhs_vol, op_ifunction_vol, op_ifunction, op_ijacobian; OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; bool matrices_set_up; CeedScalar time_bc_set; SpanStatsData spanstats; NodalProjectionData grad_velo_proj; SgsDDData sgs_dd_data; DiffFilterData diff_filter; SmartSimData smartsim; SGS_DD_TrainingData sgs_dd_train; }; // Units struct Units_private { // fundamental units PetscScalar meter; PetscScalar kilogram; PetscScalar second; PetscScalar Kelvin; // derived units PetscScalar Pascal; PetscScalar J_per_kg_K; PetscScalar m_per_squared_s; PetscScalar W_per_m_K; PetscScalar Joule; }; // Boundary conditions struct SimpleBC_private { PetscInt num_wall, // Number of faces with wall BCs wall_comps[5], // An array of constrained component numbers num_comps, num_slip[3], // Number of faces with slip BCs num_inflow, num_outflow, num_freestream; PetscInt walls[16], slips[3][16], inflows[16], outflows[16], freestreams[16]; PetscBool user_bc; }; // Struct that contains all enums and structs used for the physics of all problems struct Physics_private { PetscBool implicit; StateVariable state_var; CeedContextFieldLabel solution_time_label; CeedContextFieldLabel stg_solution_time_label; CeedContextFieldLabel timestep_size_label; CeedContextFieldLabel ics_time_label; CeedContextFieldLabel ijacobian_time_shift_label; }; typedef struct { CeedQFunctionUser qfunction; const char *qfunction_loc; CeedQFunctionContext qfunction_context; } ProblemQFunctionSpec; // Problem specific data typedef struct ProblemData_private ProblemData; struct ProblemData_private { CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; CeedScalar dm_scale; ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, apply_freestream, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian; bool non_zero_time; PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian; PetscErrorCode (*print_info)(User, ProblemData *, AppCtx); }; extern int FreeContextPetsc(void *); // ----------------------------------------------------------------------------- // Set up problems // ----------------------------------------------------------------------------- // Set up function for each problem extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_CHANNEL(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_BLASIUS(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_EULER_VORTEX(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_SHOCKTUBE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_ADVECTION(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); extern PetscErrorCode NS_ADVECTION2D(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); // Print function for each problem extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData *problem, AppCtx app_ctx); extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData *problem, AppCtx app_ctx); extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData *problem, AppCtx app_ctx); extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData *problem, AppCtx app_ctx); extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData *problem, AppCtx app_ctx); PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData *problem, MPI_Comm comm); // ----------------------------------------------------------------------------- // libCEED functions // ----------------------------------------------------------------------------- // Utility function to create local CEED restriction PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, CeedElemRestriction *elem_restr); PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, CeedElemRestriction *restriction); PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, CeedElemRestriction *restriction); PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt q_data_size, CeedElemRestriction *restriction); PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt q_data_size, CeedElemRestriction *restriction); PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); // Utility function to create CEED Composite Operator for the entire domain PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol, CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur, CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian); PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData *problem, SimpleBC bc); // ----------------------------------------------------------------------------- // Time-stepping functions // ----------------------------------------------------------------------------- // Compute mass matrix for explicit scheme PetscErrorCode ComputeLumpedMassMatrix(Ceed ceed, DM dm, CeedData ceed_data, Vec M); // RHS (Explicit time-stepper) function setup PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); // Implicit time-stepper function setup PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); // User provided TS Monitor PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); // TS: Create, setup, and solve PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts); // Update Boundary Values when time has changed PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); // ----------------------------------------------------------------------------- // Setup DM // ----------------------------------------------------------------------------- // Create mesh PetscErrorCode CreateDM(MPI_Comm comm, ProblemData *problem, MatType, VecType, DM *dm); // Set up DM PetscErrorCode SetUpDM(DM dm, ProblemData *problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, PetscInt num_fields, const PetscInt *field_sizes, DM dm); PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, PetscInt num_fields, const PetscInt *field_sizes, DM dm); // Refine DM for high-order viz PetscErrorCode VizRefineDM(DM dm, User user, ProblemData *problem, SimpleBC bc, Physics phys); // ----------------------------------------------------------------------------- // Process command line options // ----------------------------------------------------------------------------- // Register problems to be available on the command line PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); // Process general command line options PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); // ----------------------------------------------------------------------------- // Miscellaneous utility functions // ----------------------------------------------------------------------------- PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, Vec grad_FVM); // Compare reference solution values with current test run for CI PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); // Get error for problems with exact solutions PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); // Post-processing PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData *problem, User user, Vec Q, PetscScalar final_time); // -- Gather initial Q values in case of continuation of simulation PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); // Record boundary values from initial condition PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); // Versioning token for binary checkpoints extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility extern const PetscInt32 FLUIDS_FILE_TOKEN_32; extern const PetscInt32 FLUIDS_FILE_TOKEN_64; // Create appropriate mass qfunction based on number of components N PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], FILE **fp); PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); PetscErrorCode IntArrayC2P(PetscInt num_entries, CeedInt **array_ceed, PetscInt **array_petsc); PetscErrorCode IntArrayP2C(PetscInt num_entries, PetscInt **array_petsc, CeedInt **array_ceed); // ----------------------------------------------------------------------------- // Turbulence Statistics Collection Functions // ----------------------------------------------------------------------------- PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); // ----------------------------------------------------------------------------- // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions // ----------------------------------------------------------------------------- PetscErrorCode SgsDDModelSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); PetscErrorCode SgsDDModelApplyIFunction(User user, const Vec Q_loc, Vec G_loc); PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem, StateVariable state_var_input, CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, CeedVector *grid_aniso_vector); PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); // ----------------------------------------------------------------------------- // Boundary Condition Related Functions // ----------------------------------------------------------------------------- // Setup StrongBCs that use QFunctions PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData *problem, SimpleBC bc); PetscErrorCode FreestreamBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); PetscErrorCode OutflowBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); // ----------------------------------------------------------------------------- // Differential Filtering Functions // ----------------------------------------------------------------------------- PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); PetscErrorCode DifferentialFilterMmsICSetup(ProblemData *problem); // ----------------------------------------------------------------------------- // SGS Data-Driven Training via SmartSim // ----------------------------------------------------------------------------- PetscErrorCode SmartSimSetup(User user); PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim); PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); #endif // libceed_fluids_examples_navier_stokes_h