import config.package import os class Configure(config.package.Package): def __init__(self, framework): config.package.Package.__init__(self, framework) self.functions = [] self.includes = [] self.useddirectly = 0 self.linkedbypetsc = 0 self.builtafterpetsc = 1 self.PrefixWriteCheck = 0 return def setupHelp(self,help): import nargs help.addArgument('PETSc', '-with-petsc4py=', nargs.ArgBool(None, False, 'Build PETSc Python bindings (petsc4py)')) help.addArgument('PETSc', '-with-petsc4py-test-np=',nargs.ArgInt(None, None, min=1, help='Number of processes to use for petsc4py tests')) help.addArgument('PETSc', '-with-numpy-include=', nargs.Arg(None, None, 'Path to numpy headers from numpy.get_include() (default: autodetect)')) return def __str__(self): if self.found: s = 'petsc4py:\n' if hasattr(self,'pythonpath'): s += ' PYTHONPATH: '+self.pythonpath+'\n' return s return '' def setupDependencies(self, framework): config.package.Package.setupDependencies(self, framework) self.python = framework.require('config.packages.Python',self) self.setCompilers = framework.require('config.setCompilers',self) self.sharedLibraries = framework.require('PETSc.options.sharedLibraries', self) self.installdir = framework.require('PETSc.options.installDir',self) self.mpi = framework.require('config.packages.MPI',self) self.cython = framework.require('config.packages.Cython',self) self.slepc = framework.require('config.packages.SLEPc',self) # build SLEPc first self.bamg = framework.require('config.packages.BAMG',self) # build BAMG first self.odeps = [self.cython,self.slepc,self.bamg] return def getDir(self): return os.path.join('src','binding','petsc4py') def Install(self): import os installLibPath = os.path.join(self.installDir, 'lib') if self.setCompilers.isDarwin(self.log): apple = 'You may need to\n (csh/tcsh) setenv MACOSX_DEPLOYMENT_TARGET 10.X\n (sh/bash) MACOSX_DEPLOYMENT_TARGET=10.X; export MACOSX_DEPLOYMENT_TARGET\nbefore running make on PETSc' else: apple = '' self.logClearRemoveDirectory() self.logResetRemoveDirectory() archflags = "" if self.setCompilers.isDarwin(self.log): if self.setCompilers.isARM(self.log): archflags = "ARCHFLAGS=\'-arch arm64\' " elif self.types.sizes['void-p'] == 4: archflags = "ARCHFLAGS=\'-arch i386\' " else: archflags = "ARCHFLAGS=\'-arch x86_64\' " # Set PETSC_DIR/PETSC_ARCH to point at the dir with the PETSc installation: # if DESTDIR is non-empty, then PETSc has been installed into staging dir # if prefix has been specified at config time, path to PETSc includes that prefix if self.argDB['prefix'] and not 'package-prefix-hash' in self.argDB: newdir = 'PETSC_DIR=${DESTDIR}' + os.path.abspath(os.path.expanduser(self.argDB['prefix'])) + ' PETSC_ARCH= ' else: newdir = '' # Pass to setup.py if given, otherwise setup.py will autodetect numpy_include = self.argDB.get('with-numpy-include') if numpy_include is not None: newdir += 'NUMPY_INCLUDE="'+numpy_include+'" ' self.addDefine('PETSC4PY_INSTALL_PATH','"'+os.path.join(self.installdir.dir,'lib')+'"') cflags = '' # by default, multiple flags are added by setup.py (-DNDEBUG -O3 -g), no matter the type of PETSc build # this is problematic with Intel compilers, which take extremely long to compile bindings when using -g # so we instead force no additional flags (other than the ones already used by PETSc, i.e., CFLAGS) # TODO FIXME: this observation was made with Intel(R) oneAPI DPC++/C++ Compiler 2025.1.0 (2025.1.0.20250317), but it may be fixed in a subsequent release if config.setCompilers.Configure.isIntel(self.getCompiler(), self.log): cflags = 'CFLAGS=\'\' ' self.addPost(self.packageDir, ['${RM} -rf build', newdir + archflags + cflags + ' PYTHONPATH=${PETSCPYTHONPATH} ' + self.python.pyexe + ' setup.py build', 'MPICC=${PCC} ' + newdir + archflags + self.python.pyexe +' setup.py install --install-lib=' + installLibPath + ' $(if $(DESTDIR),--root=\'$(DESTDIR)\')']) self.pythonpath = installLibPath np = self.make.make_test_np if self.mpi.usingMPIUni: np = 1 # TODO: some tests currently have issues with np > 4, this should be fixed np = min(np,4) if 'with-petsc4py-test-np' in self.argDB and self.argDB['with-petsc4py-test-np']: np = self.argDB['with-petsc4py-test-np'] self.addMakeMacro('PETSC4PY_NP',np) self.addTest('.', 'PYTHONPATH=%s:${PETSCPYTHONPATH} PETSC_OPTIONS="%s" ${MPIEXEC} -n ${PETSC4PY_NP} %s %s --verbose' % (installLibPath, '${PETSC_OPTIONS} -check_pointer_intensity 0 -error_output_stdout -malloc_dump ${PETSC_TEST_OPTIONS}', self.python.pyexe, os.path.join(self.packageDir, 'test', 'runtests.py'))) self.found = True self.python.path.add(installLibPath) return self.installDir def configureLibrary(self): import sys if not self.sharedLibraries.useShared and not self.setCompilers.isCygwin(self.log): raise RuntimeError('petsc4py requires PETSc be built with shared libraries; rerun with --with-shared-libraries') if sys.version_info < (3, 6): raise RuntimeError('petsc4py requires Python 3.6 at least') chkpkgs = ['numpy'] if sys.version_info >= (3, 12): chkpkgs.append('setuptools') npkgs = [] for pkg in chkpkgs: if not getattr(self.python,pkg): npkgs.append(pkg) if npkgs: raise RuntimeError('petsc4py requires Python with "%s" module(s) installed!\n' 'Please install using package managers - for ex: "apt" or "dnf" (on linux),\n' 'or with "pip" using: %s -m pip install %s' % (" ".join(npkgs), self.python.pyexe, " ".join(npkgs))) self.getInstallDir() def alternateConfigureLibrary(self): '''This is ugly but currently .gitlab-ci.yml is hardwired to use petsc4pytest''' self.addMakeRule('petsc4pytest','')