static char help[] = "Tests various DMPlex routines to construct, refine and distribute a mesh.\n\n"; #include #include typedef enum {BOX, CYLINDER, SPHERE, BALL} DomainShape; enum {STAGE_LOAD, STAGE_DISTRIBUTE, STAGE_REFINE, STAGE_OVERLAP}; typedef struct { DM dm; /* REQUIRED in order to use SNES evaluation functions */ PetscInt debug; /* The debugging level */ PetscLogEvent createMeshEvent; PetscLogStage stages[4]; /* Domain and mesh definition */ PetscInt dim; /* The topological mesh dimension */ PetscBool interpolate; /* Generate intermediate mesh elements */ PetscReal refinementLimit; /* The largest allowable cell volume */ PetscBool cellSimplex; /* Use simplices or hexes */ PetscBool cellWedge; /* Use wedges */ DomainShape domainShape; /* Shape of the region to be meshed */ PetscInt *domainBoxSizes; /* Sizes of the box mesh */ PetscReal *domainBoxL,*domainBoxU; /* Lower left, upper right corner of the box mesh */ DMBoundaryType periodicity[3]; /* The domain periodicity */ char filename[PETSC_MAX_PATH_LEN]; /* Import mesh from file */ char bdfilename[PETSC_MAX_PATH_LEN]; /* Import mesh boundary from file */ char extfilename[PETSC_MAX_PATH_LEN]; /* Import 2D mesh to be extruded from file */ PetscBool testPartition; /* Use a fixed partitioning for testing */ PetscInt overlap; /* The cell overlap to use during partitioning */ PetscReal extrude_thickness; /* Thickness of extrusion */ PetscInt extrude_layers; /* Layers to be extruded */ PetscBool testp4est[2]; PetscBool redistribute; PetscBool final_ref; /* Run refinement at the end */ PetscBool final_diagnostics; /* Run diagnostics on the final mesh */ } AppCtx; PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) { const char *dShapes[4] = {"box", "cylinder", "sphere", "ball"}; PetscInt shape, bd, n; static PetscInt domainBoxSizes[3] = {1,1,1}; static PetscReal domainBoxL[3] = {0.,0.,0.}; static PetscReal domainBoxU[3] = {1.,1.,1.}; PetscBool flg; PetscErrorCode ierr; PetscFunctionBegin; options->debug = 0; options->dim = 2; options->interpolate = PETSC_FALSE; options->refinementLimit = 0.0; options->cellSimplex = PETSC_TRUE; options->cellWedge = PETSC_FALSE; options->domainShape = BOX; options->domainBoxSizes = NULL; options->domainBoxL = NULL; options->domainBoxU = NULL; options->periodicity[0] = DM_BOUNDARY_NONE; options->periodicity[1] = DM_BOUNDARY_NONE; options->periodicity[2] = DM_BOUNDARY_NONE; options->filename[0] = '\0'; options->bdfilename[0] = '\0'; options->extfilename[0] = '\0'; options->testPartition = PETSC_FALSE; options->overlap = 0; options->extrude_layers = 2; options->extrude_thickness = 0.1; options->testp4est[0] = PETSC_FALSE; options->testp4est[1] = PETSC_FALSE; options->redistribute = PETSC_FALSE; options->final_ref = PETSC_FALSE; options->final_diagnostics = PETSC_TRUE; ierr = PetscOptionsBegin(comm, "", "Meshing Problem Options", "DMPLEX");CHKERRQ(ierr); ierr = PetscOptionsBoundedInt("-debug", "The debugging level", "ex1.c", options->debug, &options->debug, NULL,0);CHKERRQ(ierr); ierr = PetscOptionsRangeInt("-dim", "The topological mesh dimension", "ex1.c", options->dim, &options->dim, NULL,1,3);CHKERRQ(ierr); ierr = PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex1.c", options->interpolate, &options->interpolate, NULL);CHKERRQ(ierr); ierr = PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex1.c", options->refinementLimit, &options->refinementLimit, NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-cell_simplex", "Use simplices if true, otherwise hexes", "ex1.c", options->cellSimplex, &options->cellSimplex, NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-cell_wedge", "Use wedges if true", "ex1.c", options->cellWedge, &options->cellWedge, NULL);CHKERRQ(ierr); shape = options->domainShape; ierr = PetscOptionsEList("-domain_shape","The shape of the domain","ex1.c", dShapes, 4, dShapes[options->domainShape], &shape, NULL);CHKERRQ(ierr); options->domainShape = (DomainShape) shape; ierr = PetscOptionsIntArray("-domain_box_sizes","The sizes of the box domain","ex1.c", domainBoxSizes, (n=3,&n), &flg);CHKERRQ(ierr); if (flg) { options->domainShape = BOX; options->domainBoxSizes = domainBoxSizes;} ierr = PetscOptionsRealArray("-domain_box_ll","Coordinates of the lower left corner of the box domain","ex1.c", domainBoxL, (n=3,&n), &flg);CHKERRQ(ierr); if (flg) { options->domainBoxL = domainBoxL;} ierr = PetscOptionsRealArray("-domain_box_ur","Coordinates of the upper right corner of the box domain","ex1.c", domainBoxU, (n=3,&n), &flg);CHKERRQ(ierr); if (flg) { options->domainBoxU = domainBoxU;} bd = options->periodicity[0]; ierr = PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);CHKERRQ(ierr); options->periodicity[0] = (DMBoundaryType) bd; bd = options->periodicity[1]; ierr = PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);CHKERRQ(ierr); options->periodicity[1] = (DMBoundaryType) bd; bd = options->periodicity[2]; ierr = PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);CHKERRQ(ierr); options->periodicity[2] = (DMBoundaryType) bd; ierr = PetscOptionsString("-filename", "The mesh file", "ex1.c", options->filename, options->filename, PETSC_MAX_PATH_LEN, NULL);CHKERRQ(ierr); ierr = PetscOptionsString("-bd_filename", "The mesh boundary file", "ex1.c", options->bdfilename, options->bdfilename, PETSC_MAX_PATH_LEN, NULL);CHKERRQ(ierr); ierr = PetscOptionsString("-ext_filename", "The 2D mesh file to be extruded", "ex1.c", options->extfilename, options->extfilename, PETSC_MAX_PATH_LEN, NULL);CHKERRQ(ierr); ierr = PetscOptionsBoundedInt("-ext_layers", "The number of layers to extrude", "ex1.c", options->extrude_layers, &options->extrude_layers, NULL,0);CHKERRQ(ierr); ierr = PetscOptionsReal("-ext_thickness", "The thickness of the layer to be extruded", "ex1.c", options->extrude_thickness, &options->extrude_thickness, NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-test_partition", "Use a fixed partition for testing", "ex1.c", options->testPartition, &options->testPartition, NULL);CHKERRQ(ierr); ierr = PetscOptionsBoundedInt("-overlap", "The cell overlap for partitioning", "ex1.c", options->overlap, &options->overlap, NULL,0);CHKERRQ(ierr); ierr = PetscOptionsBool("-test_p4est_seq", "Test p4est with sequential base DM", "ex1.c", options->testp4est[0], &options->testp4est[0], NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-test_p4est_par", "Test p4est with parallel base DM", "ex1.c", options->testp4est[1], &options->testp4est[1], NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-test_redistribute", "Test redistribution", "ex1.c", options->redistribute, &options->redistribute, NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-final_ref", "Run uniform refinement on the final mesh", "ex1.c", options->final_ref, &options->final_ref, NULL);CHKERRQ(ierr); ierr = PetscOptionsBool("-final_diagnostics", "Run diagnostics on the final mesh", "ex1.c", options->final_diagnostics, &options->final_diagnostics, NULL);CHKERRQ(ierr); ierr = PetscOptionsEnd(); ierr = PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);CHKERRQ(ierr); ierr = PetscLogStageRegister("MeshLoad", &options->stages[STAGE_LOAD]);CHKERRQ(ierr); ierr = PetscLogStageRegister("MeshDistribute", &options->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr); ierr = PetscLogStageRegister("MeshRefine", &options->stages[STAGE_REFINE]);CHKERRQ(ierr); ierr = PetscLogStageRegister("MeshOverlap", &options->stages[STAGE_OVERLAP]);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Overload time to be the sphere radius */ static void snapToSphere(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) { PetscReal norm2 = 0.0, fac; PetscInt n = uOff[1] - uOff[0], d; for (d = 0; d < n; ++d) norm2 += PetscSqr(PetscRealPart(u[d])); fac = t/PetscSqrtReal(norm2); for (d = 0; d < n; ++d) f0[d] = u[d]*fac; } PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) { PetscInt dim = user->dim; PetscBool interpolate = user->interpolate; PetscReal refinementLimit = user->refinementLimit; PetscBool cellSimplex = user->cellSimplex; PetscBool cellWedge = user->cellWedge; const char *filename = user->filename; const char *bdfilename = user->bdfilename; const char *extfilename = user->extfilename; PetscBool testp4est_seq = user->testp4est[0]; PetscBool testp4est_par = user->testp4est[1]; PetscInt triSizes_n2[2] = {4, 4}; PetscInt triPoints_n2[8] = {3, 5, 6, 7, 0, 1, 2, 4}; PetscInt triSizes_n8[8] = {1, 1, 1, 1, 1, 1, 1, 1}; PetscInt triPoints_n8[8] = {0, 1, 2, 3, 4, 5, 6, 7}; PetscInt quadSizes[2] = {2, 2}; PetscInt quadPoints[4] = {2, 3, 0, 1}; PetscInt gmshSizes_n3[3] = {14, 14, 14}; PetscInt gmshPoints_n3[42] = {1, 2, 4, 5, 9, 10, 11, 15, 16, 20, 21, 27, 28, 29, 3, 8, 12, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 0, 6, 7, 13, 14, 17, 18, 19, 22, 23, 24, 25, 26, 41}; PetscInt fluentSizes_n3[3] = {50, 50, 50}; PetscInt fluentPoints_n3[150] = { 5, 6, 7, 8, 12, 14, 16, 34, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 48, 50, 51, 80, 81, 89, 91, 93, 94, 95, 96, 97, 98, 99, 100, 101, 104, 121, 122, 124, 125, 126, 127, 128, 129, 131, 133, 143, 144, 145, 147, 1, 3, 4, 9, 10, 17, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35, 47, 61, 71, 72, 73, 74, 75, 76, 77, 78, 79, 86, 87, 88, 90, 92, 113, 115, 116, 117, 118, 119, 120, 123, 138, 140, 141, 142, 146, 148, 149, 0, 2, 11, 13, 15, 20, 21, 22, 23, 49, 52, 53, 54, 55, 56, 57, 58, 59, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 82, 83, 84, 85, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 114, 130, 132, 134, 135, 136, 137, 139}; size_t len, bdlen, extlen; PetscMPIInt rank, size; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscLogEventBegin(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr); ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); ierr = PetscStrlen(filename, &len);CHKERRQ(ierr); ierr = PetscStrlen(bdfilename, &bdlen);CHKERRQ(ierr); ierr = PetscStrlen(extfilename, &extlen);CHKERRQ(ierr); ierr = PetscLogStagePush(user->stages[STAGE_LOAD]);CHKERRQ(ierr); if (len) { ierr = DMPlexCreateFromFile(comm, filename, interpolate, dm);CHKERRQ(ierr); } else if (bdlen) { DM boundary; ierr = DMPlexCreateFromFile(comm, bdfilename, interpolate, &boundary);CHKERRQ(ierr); ierr = DMPlexGenerate(boundary, NULL, interpolate, dm);CHKERRQ(ierr); ierr = DMDestroy(&boundary);CHKERRQ(ierr); } else if (extlen) { DM edm; ierr = DMPlexCreateFromFile(comm, extfilename, interpolate, &edm);CHKERRQ(ierr); ierr = DMPlexExtrude(edm, user->extrude_layers, user->extrude_thickness, PETSC_TRUE, interpolate, dm);CHKERRQ(ierr); ierr = DMDestroy(&edm);CHKERRQ(ierr); } else { switch (user->domainShape) { case BOX: if (cellWedge) { if (dim != 3) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a wedge mesh, not %D", dim); ierr = DMPlexCreateWedgeBoxMesh(comm, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, PETSC_FALSE, interpolate, dm);CHKERRQ(ierr); } else { ierr = DMPlexCreateBoxMesh(comm, dim, cellSimplex, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, interpolate, dm);CHKERRQ(ierr); } break; case CYLINDER: if (cellSimplex) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Cannot mesh a cylinder with simplices"); if (dim != 3) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a cylinder mesh, not %D", dim); if (cellWedge) { ierr = DMPlexCreateWedgeCylinderMesh(comm, 6, interpolate, dm);CHKERRQ(ierr); } else { ierr = DMPlexCreateHexCylinderMesh(comm, 1, user->periodicity[2], dm);CHKERRQ(ierr); } break; case SPHERE: ierr = DMPlexCreateSphereMesh(comm, dim, cellSimplex, dm);CHKERRQ(ierr); break; case BALL: { DM sdm; PetscInt Nr = 0, r; ierr = DMPlexCreateSphereMesh(comm, dim-1, cellSimplex, &sdm);CHKERRQ(ierr); { DM cdm; PetscFE fe; PetscInt dim, dE; ierr = DMGetCoordinateDM(sdm, &cdm);CHKERRQ(ierr); ierr = DMGetDimension(sdm, &dim);CHKERRQ(ierr); ierr = DMGetCoordinateDim(sdm, &dE);CHKERRQ(ierr); ierr = PetscFECreateLagrange(PETSC_COMM_SELF, dim, dE, PETSC_TRUE, 1, -1, &fe);CHKERRQ(ierr); ierr = DMSetField(cdm, 0, NULL, (PetscObject) fe);CHKERRQ(ierr); ierr = PetscFEDestroy(&fe);CHKERRQ(ierr); ierr = DMCreateDS(cdm);CHKERRQ(ierr); } ierr = PetscOptionsGetInt(NULL, "bd_", "-dm_refine", &Nr, NULL);CHKERRQ(ierr); for (r = 0; r < Nr; ++r) { DM rdm, cdm, rcdm; ierr = DMRefine(sdm, PETSC_COMM_WORLD, &rdm);CHKERRQ(ierr); ierr = DMGetCoordinateDM(sdm, &cdm);CHKERRQ(ierr); ierr = DMGetCoordinateDM(rdm, &rcdm);CHKERRQ(ierr); ierr = DMCopyDisc(cdm, rcdm);CHKERRQ(ierr); ierr = DMPlexRemapGeometry(rdm, 1.0, snapToSphere);CHKERRQ(ierr); ierr = DMDestroy(&sdm);CHKERRQ(ierr); sdm = rdm; } ierr = DMPlexGenerate(sdm, NULL, interpolate, dm);CHKERRQ(ierr); ierr = DMDestroy(&sdm);CHKERRQ(ierr); } break; default: SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Unknown domain shape %D", user->domainShape); } } ierr = DMLocalizeCoordinates(*dm);CHKERRQ(ierr); /* needed for periodic */ ierr = DMViewFromOptions(*dm,NULL,"-init_dm_view");CHKERRQ(ierr); ierr = DMGetDimension(*dm,&dim);CHKERRQ(ierr); if (testp4est_seq) { #if defined(PETSC_HAVE_P4EST) DM dmConv = NULL; ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr); ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr); ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr); ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr); ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr); if (dmConv) { ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } ierr = DMViewFromOptions(*dm,NULL,"-initref_dm_view");CHKERRQ(ierr); ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr); ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr); user->cellSimplex = PETSC_FALSE; ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr); if (dmConv) { ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_1_");CHKERRQ(ierr); ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_1_");CHKERRQ(ierr); ierr = DMSetUp(*dm);CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); ierr = DMConvert(*dm,DMPLEX,&dmConv);CHKERRQ(ierr); if (dmConv) { ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_2_");CHKERRQ(ierr); ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_2_");CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr); #else SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est"); #endif } ierr = PetscLogStagePop();CHKERRQ(ierr); if (!testp4est_seq) { DM refinedMesh = NULL; DM distributedMesh = NULL; if (user->testPartition) { const PetscInt *sizes = NULL; const PetscInt *points = NULL; PetscPartitioner part; if (!rank) { if (dim == 2 && cellSimplex && size == 2) { sizes = triSizes_n2; points = triPoints_n2; } else if (dim == 2 && cellSimplex && size == 8) { sizes = triSizes_n8; points = triPoints_n8; } else if (dim == 2 && !cellSimplex && size == 2) { sizes = quadSizes; points = quadPoints; } else if (dim == 2 && size == 3) { PetscInt Nc; ierr = DMPlexGetHeightStratum(*dm, 0, NULL, &Nc);CHKERRQ(ierr); if (Nc == 42) { /* Gmsh 3 & 4 */ sizes = gmshSizes_n3; points = gmshPoints_n3; } else if (Nc == 150) { /* Fluent 1 */ sizes = fluentSizes_n3; points = fluentPoints_n3; } else if (Nc == 42) { /* Med 1 */ } else if (Nc == 161) { /* Med 3 */ } } } ierr = DMPlexGetPartitioner(*dm, &part);CHKERRQ(ierr); ierr = PetscPartitionerSetType(part, PETSCPARTITIONERSHELL);CHKERRQ(ierr); ierr = PetscPartitionerShellSetPartition(part, size, sizes, points);CHKERRQ(ierr); } else { PetscPartitioner part; ierr = DMPlexGetPartitioner(*dm,&part);CHKERRQ(ierr); ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr); } /* Distribute mesh over processes */ ierr = PetscLogStagePush(user->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_dist_view");CHKERRQ(ierr); ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr); if (distributedMesh) { ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = distributedMesh; } ierr = PetscLogStagePop();CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-distributed_dm_view");CHKERRQ(ierr); /* Refine mesh using a volume constraint */ ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr); ierr = DMPlexSetRefinementUniform(*dm, PETSC_FALSE);CHKERRQ(ierr); ierr = DMPlexSetRefinementLimit(*dm, refinementLimit);CHKERRQ(ierr); ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr); if (refinedMesh) { ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = refinedMesh; } ierr = PetscLogStagePop();CHKERRQ(ierr); } ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr); ierr = DMSetFromOptions(*dm);CHKERRQ(ierr); ierr = PetscLogStagePop();CHKERRQ(ierr); if (testp4est_par) { #if defined(PETSC_HAVE_P4EST) DM dmConv = NULL; ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr); ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr); ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr); ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr); if (dmConv) { ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } user->cellSimplex = PETSC_FALSE; ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr); ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr); ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr); ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr); ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr); if (dmConv) { ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_1_");CHKERRQ(ierr); ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_1_");CHKERRQ(ierr); ierr = DMSetUp(*dm);CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); ierr = DMConvert(*dm, DMPLEX, &dmConv);CHKERRQ(ierr); if (dmConv) { ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_2_");CHKERRQ(ierr); ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = dmConv; } ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_2_");CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr); #else SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est"); #endif } /* test redistribution of an already distributed mesh */ if (user->redistribute) { DM distributedMesh; PetscSF sf; PetscInt nranks; ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_redist_view");CHKERRQ(ierr); ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr); if (distributedMesh) { ierr = DMGetPointSF(distributedMesh, &sf);CHKERRQ(ierr); ierr = PetscSFSetUp(sf);CHKERRQ(ierr); ierr = DMGetNeighbors(distributedMesh, &nranks, NULL);CHKERRQ(ierr); ierr = MPI_Allreduce(MPI_IN_PLACE, &nranks, 1, MPIU_INT, MPI_MIN, PetscObjectComm((PetscObject)*dm));CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)*dm)), "Minimum number of neighbors: %D\n", nranks);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = distributedMesh; } ierr = DMViewFromOptions(*dm, NULL, "-dm_post_redist_view");CHKERRQ(ierr); } if (user->overlap) { DM overlapMesh = NULL; /* Add the overlap to refined mesh */ ierr = PetscLogStagePush(user->stages[STAGE_OVERLAP]);CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_overlap_view");CHKERRQ(ierr); ierr = DMPlexDistributeOverlap(*dm, user->overlap, NULL, &overlapMesh);CHKERRQ(ierr); if (overlapMesh) { PetscInt overlap; ierr = DMPlexGetOverlap(overlapMesh, &overlap);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "Overlap: %D\n", overlap);CHKERRQ(ierr); ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = overlapMesh; } ierr = DMViewFromOptions(*dm, NULL, "-dm_post_overlap_view");CHKERRQ(ierr); ierr = PetscLogStagePop();CHKERRQ(ierr); } if (user->final_ref) { DM refinedMesh = NULL; ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr); ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr); if (refinedMesh) { ierr = DMDestroy(dm);CHKERRQ(ierr); *dm = refinedMesh; } } ierr = PetscObjectSetName((PetscObject) *dm, "Simplicial Mesh");CHKERRQ(ierr); ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); if (user->final_diagnostics) { DMPlexInterpolatedFlag interpolated; PetscInt dim, depth; ierr = DMGetDimension(*dm, &dim);CHKERRQ(ierr); ierr = DMPlexGetDepth(*dm, &depth);CHKERRQ(ierr); ierr = DMPlexIsInterpolatedCollective(*dm, &interpolated);CHKERRQ(ierr); ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr); if (interpolated == DMPLEX_INTERPOLATED_FULL) { ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr); } ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr); ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr); } ierr = PetscLogEventEnd(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr); user->dm = *dm; PetscFunctionReturn(0); } int main(int argc, char **argv) { AppCtx user; /* user-defined work context */ PetscErrorCode ierr; ierr = PetscInitialize(&argc, &argv, NULL, help);if (ierr) return ierr; ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr); ierr = CreateMesh(PETSC_COMM_WORLD, &user, &user.dm);CHKERRQ(ierr); ierr = DMDestroy(&user.dm);CHKERRQ(ierr); ierr = PetscFinalize(); return ierr; } /*TEST # CTetGen 0-1 test: suffix: 0 requires: ctetgen args: -dim 3 -ctetgen_verbose 4 -dm_view ascii::ascii_info_detail -info :~sys test: suffix: 1 requires: ctetgen args: -dim 3 -ctetgen_verbose 4 -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail -info :~sys # 2D LaTex and ASCII output 2-9 test: suffix: 2 requires: triangle args: -dim 2 -dm_view ascii::ascii_latex test: suffix: 3 requires: triangle args: -dim 2 -dm_refine 1 -interpolate 1 -dm_view ascii::ascii_info_detail test: suffix: 4 requires: triangle nsize: 2 args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_info_detail test: suffix: 5 requires: triangle nsize: 2 args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex test: suffix: 6 args: -dim 2 -cell_simplex 0 -interpolate -dm_view ascii::ascii_info_detail test: suffix: 7 args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -dm_view ascii::ascii_info_detail test: suffix: 8 nsize: 2 args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex # 1D ASCII output test: suffix: 1d_0 args: -dim 1 -domain_shape box -dm_view ascii::ascii_info_detail test: suffix: 1d_1 args: -dim 1 -domain_shape box -dm_refine 2 -dm_view ascii::ascii_info_detail test: suffix: 1d_2 args: -dim 1 -domain_box_sizes 5 -x_periodicity periodic -dm_view ascii::ascii_info_detail -dm_plex_check_all # Parallel refinement tests with overlap test: suffix: refine_overlap_1d nsize: 2 args: -dim 1 -domain_box_sizes 4 -dm_refine 1 -overlap {{0 1 2}separate output} -petscpartitioner_type simple -dm_view ascii::ascii_info test: suffix: refine_overlap_2d requires: triangle nsize: {{2 8}separate output} args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -test_partition -overlap {{0 1 2}separate output} -dm_view ascii::ascii_info # Parallel simple partitioner tests test: suffix: part_simple_0 requires: triangle nsize: 2 args: -dim 2 -cell_simplex 1 -dm_refine 0 -interpolate 0 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail test: suffix: part_simple_1 requires: triangle nsize: 8 args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail # Parallel partitioner tests test: suffix: part_parmetis_0 requires: parmetis nsize: 2 args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type parmetis -dm_view -petscpartitioner_view -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph test: suffix: part_ptscotch_0 requires: ptscotch nsize: 2 args: -dim 2 -cell_simplex 0 -dm_refine 0 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_strategy quality -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph test: suffix: part_ptscotch_1 requires: ptscotch nsize: 8 args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_imbalance 0.1 # CGNS reader tests 10-11 (need to find smaller test meshes) test: suffix: cgns_0 requires: cgns args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/tut21.cgns -interpolate 1 -dm_view # Gmsh mesh reader tests test: suffix: gmsh_0 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh -interpolate 1 -dm_view test: suffix: gmsh_1 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -interpolate 1 -dm_view test: suffix: gmsh_2 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -interpolate 1 -dm_view test: suffix: gmsh_3 nsize: 3 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -test_partition -interpolate 1 -dm_view test: suffix: gmsh_4 nsize: 3 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -test_partition -interpolate 1 -dm_view test: suffix: gmsh_5 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_quad.msh -interpolate 1 -dm_view # TODO: it seems the mesh is not a valid gmsh (inverted cell) test: suffix: gmsh_6 requires: !single args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -interpolate 1 -dm_view -final_diagnostics 0 test: suffix: gmsh_7 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all test: suffix: gmsh_8 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all testset: args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all test: suffix: gmsh_9 test: suffix: gmsh_9_periodic_0 args: -dm_plex_gmsh_periodic 0 testset: args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all test: suffix: gmsh_10 test: suffix: gmsh_10_periodic_0 args: -dm_plex_gmsh_periodic 0 testset: args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all -dm_refine 1 test: suffix: gmsh_11 test: suffix: gmsh_11_periodic_0 args: -dm_plex_gmsh_periodic 0 # TODO: it seems the mesh is not a valid gmsh (inverted cell) test: suffix: gmsh_12 nsize: 4 requires: !single mpiio args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -viewer_binary_mpiio -petscpartitioner_type simple -interpolate 1 -dm_view -final_diagnostics 0 test: suffix: gmsh_13_hybs2t nsize: 4 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -petscpartitioner_type simple -interpolate 1 -dm_view -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all test: suffix: gmsh_14_ext requires: !single args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all test: suffix: gmsh_14_ext_s2t requires: !single args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox test: suffix: gmsh_15_hyb3d args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all test: suffix: gmsh_15_hyb3d_vtk args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view vtk: -interpolate -dm_plex_gmsh_hybrid -dm_plex_check_all test: suffix: gmsh_15_hyb3d_s2t args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox test: suffix: gmsh_16_spheresurface nsize : 4 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple test: suffix: gmsh_16_spheresurface_s2t nsize : 4 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple test: suffix: gmsh_16_spheresurface_extruded nsize : 4 args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple test: suffix: gmsh_16_spheresurface_extruded_s2t nsize : 4 args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple test: suffix: gmsh_17_hyb3d_interp_ascii args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.msh -dm_view -interpolate -dm_plex_check_all test: suffix: exodus_17_hyb3d_interp_ascii requires: exodusii args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.exo -dm_view -interpolate -dm_plex_check_all # Legacy Gmsh v22/v40 ascii/binary reader tests testset: output_file: output/ex1_gmsh_3d_legacy.out args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all test: suffix: gmsh_3d_ascii_v22 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2 test: suffix: gmsh_3d_ascii_v40 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh4 test: suffix: gmsh_3d_binary_v22 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh2 test: suffix: gmsh_3d_binary_v40 requires: long64 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh4 # Gmsh v41 ascii/binary reader tests testset: # 32bit mesh, sequential args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all output_file: output/ex1_gmsh_3d_32.out test: suffix: gmsh_3d_ascii_v41_32 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh test: suffix: gmsh_3d_binary_v41_32 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh test: suffix: gmsh_3d_binary_v41_32_mpiio requires: define(PETSC_HAVE_MPIIO) args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio testset: # 32bit mesh, parallel args: -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all nsize: 2 output_file: output/ex1_gmsh_3d_32_np2.out test: suffix: gmsh_3d_ascii_v41_32_np2 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh test: suffix: gmsh_3d_binary_v41_32_np2 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh test: suffix: gmsh_3d_binary_v41_32_np2_mpiio requires: define(PETSC_HAVE_MPIIO) args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio testset: # 64bit mesh, sequential args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all output_file: output/ex1_gmsh_3d_64.out test: suffix: gmsh_3d_ascii_v41_64 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh test: suffix: gmsh_3d_binary_v41_64 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh test: suffix: gmsh_3d_binary_v41_64_mpiio requires: define(PETSC_HAVE_MPIIO) args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio testset: # 64bit mesh, parallel args: -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all nsize: 2 output_file: output/ex1_gmsh_3d_64_np2.out test: suffix: gmsh_3d_ascii_v41_64_np2 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh test: suffix: gmsh_3d_binary_v41_64_np2 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh test: suffix: gmsh_3d_binary_v41_64_np2_mpiio requires: define(PETSC_HAVE_MPIIO) args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio # Fluent mesh reader tests # TODO: Geometry checks fail test: suffix: fluent_0 requires: !complex args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -dm_view -final_diagnostics 0 test: suffix: fluent_1 nsize: 3 requires: !complex args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -test_partition -dm_view -final_diagnostics 0 test: suffix: fluent_2 requires: !complex args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets_ascii.cas -interpolate 1 -dm_view -final_diagnostics 0 test: suffix: fluent_3 requires: !complex TODO: Fails on non-linux: fseek(), fileno() ? https://gitlab.com/petsc/petsc/merge_requests/2206#note_238166382 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets.cas -interpolate 1 -dm_view -final_diagnostics 0 # Med mesh reader tests, including parallel file reads test: suffix: med_0 requires: med args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -dm_view test: suffix: med_1 requires: med nsize: 3 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -petscpartitioner_type simple -dm_view test: suffix: med_2 requires: med args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -dm_view test: suffix: med_3 requires: med TODO: MED nsize: 3 args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -petscpartitioner_type simple -dm_view # Test shape quality test: suffix: test_shape requires: ctetgen args: -dim 3 -interpolate -dm_refine_hierarchy 3 -dm_plex_check_all -dm_plex_check_cell_shape # Test simplex to tensor conversion test: suffix: s2t2 requires: triangle args: -dim 2 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail test: suffix: s2t3 requires: ctetgen args: -dim 3 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail # Test domain shapes test: suffix: cylinder args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -dm_plex_check_all -dm_view test: suffix: cylinder_per args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -z_periodicity periodic -dm_plex_check_all -dm_view test: suffix: cylinder_wedge args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all test: suffix: cylinder_wedge_int output_file: output/ex1_cylinder_wedge.out args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all test: suffix: box_2d args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view test: suffix: box_2d_per args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view test: suffix: box_2d_per_unint args: -dim 2 -cell_simplex 0 -interpolate 0 -domain_shape box -domain_box_sizes 3,3 -dm_plex_check_all -dm_view ::ascii_info_detail test: suffix: box_3d args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 3 -dm_plex_check_all -dm_view test: requires: triangle suffix: box_wedge args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -dm_view vtk: -dm_plex_check_all testset: requires: triangle args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -domain_box_sizes 2,3,1 -dm_view -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox test: suffix: box_wedge_s2t test: nsize: 3 args: -petscpartitioner_type simple suffix: box_wedge_s2t_parallel # Test GLVis output test: suffix: glvis_2d_tet args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0 -dm_view glvis: test: suffix: glvis_2d_tet_per args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0 test: suffix: glvis_2d_tet_per_mfem args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate test: suffix: glvis_2d_quad args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -dm_view glvis: test: suffix: glvis_2d_quad_per args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary test: suffix: glvis_2d_quad_per_mfem args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem test: suffix: glvis_3d_tet args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_plex_gmsh_periodic 0 -dm_view glvis: test: suffix: glvis_3d_tet_per args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view glvis: -interpolate -viewer_glvis_dm_plex_enable_boundary test: suffix: glvis_3d_tet_per_mfem TODO: broken args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate test: suffix: glvis_3d_hex args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -dm_view glvis: test: suffix: glvis_3d_hex_per args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0 test: suffix: glvis_3d_hex_per_mfem args: -dim 3 -cell_simplex 0 -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -interpolate # Test P4EST testset: requires: p4est args: -interpolate -dm_view -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 1 test: suffix: p4est_periodic args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash test: suffix: p4est_periodic_3d args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash test: suffix: p4est_gmsh_periodic args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh test: suffix: p4est_gmsh_surface args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 test: suffix: p4est_gmsh_surface_parallel nsize: 2 args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -petscpartitioner_type simple -dm_view ::load_balance test: suffix: p4est_hyb_2d args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh test: suffix: p4est_hyb_3d args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh test: requires: ctetgen suffix: p4est_s2t_bugfaces_3d args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 0 -dim 3 -domain_box_sizes 1,1 -cell_simplex test: suffix: p4est_bug_overlapsf nsize: 3 args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -petscpartitioner_type simple test: suffix: p4est_redistribute nsize: 3 args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -petscpartitioner_type simple -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_view ::load_balance test: suffix: p4est_gmsh_s2t_3d args: -conv_seq_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: suffix: p4est_gmsh_s2t_3d_hash args: -conv_seq_1_dm_forest_initial_refinement 1 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: requires: long_runtime suffix: p4est_gmsh_periodic_3d args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh testset: requires: p4est nsize: 6 args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 0 test: TODO: interface cones do not conform suffix: p4est_par_periodic args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash test: TODO: interface cones do not conform suffix: p4est_par_periodic_3d args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash test: TODO: interface cones do not conform suffix: p4est_par_gmsh_periodic args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh test: suffix: p4est_par_gmsh_surface args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 test: suffix: p4est_par_gmsh_s2t_3d args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: TODO: interface cones do not conform suffix: p4est_par_gmsh_s2t_3d_hash args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: requires: long_runtime suffix: p4est_par_gmsh_periodic_3d args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh testset: requires: p4est nsize: 6 args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 1 -petscpartitioner_type simple test: suffix: p4est_par_ovl_periodic args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash #TODO Mesh cell 201 is inverted, vol = 0. (FVM Volume. Is it correct? -> Diagnostics disabled) test: suffix: p4est_par_ovl_periodic_3d args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -final_diagnostics 0 test: suffix: p4est_par_ovl_gmsh_periodic args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh test: suffix: p4est_par_ovl_gmsh_surface args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 test: suffix: p4est_par_ovl_gmsh_s2t_3d args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: suffix: p4est_par_ovl_gmsh_s2t_3d_hash args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh test: requires: long_runtime suffix: p4est_par_ovl_gmsh_periodic_3d args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh test: suffix: p4est_par_ovl_hyb_2d args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh test: suffix: p4est_par_ovl_hyb_3d args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh test: TODO: broken requires: p4est nsize: 2 suffix: p4est_bug_labels_noovl args: -interpolate -test_p4est_seq -dm_plex_check_all -dm_forest_minimum_refinement 0 -dm_forest_partition_overlap 1 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -dm_forest_initial_refinement 0 -dm_forest_maximum_refinement 2 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -dm_forest_print_label_error test: requires: p4est nsize: 2 suffix: p4est_bug_distribute_overlap args: -interpolate -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 0 -conv_seq_1_dm_forest_partition_overlap 0 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -petscpartitioner_type simple -overlap 1 -dm_view ::load_balance args: -dm_post_overlap_view test: suffix: glvis_2d_hyb args: -dim 2 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple test: suffix: glvis_3d_hyb args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple test: suffix: glvis_3d_hyb_s2t args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_3d_cube.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all TEST*/