#include <../src/mat/impls/aij/mpi/mpiaij.h>
/*@C
  MatCreateMPIAIJPERM - Creates a sparse parallel matrix whose local
  portions are stored as `MATSEQAIJPERM` matrices (a matrix class that inherits
  from SEQAIJ but includes some optimizations to allow more effective
  vectorization).

  Collective

  Input Parameters:
+ comm  - MPI communicator
. m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
           This value should be the same as the local size used in creating the
           y vector for the matrix-vector product y = Ax.
. n     - This value should be the same as the local size used in creating the
       x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
       calculated if `N` is given) For square matrices `n` is almost always `m`.
. M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
. N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
. d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
           (same value is used for all local rows)
. d_nnz - array containing the number of nonzeros in the various rows of the
           DIAGONAL portion of the local submatrix (possibly different for each row)
           or `NULL`, if `d_nz` is used to specify the nonzero structure.
           The size of this array is equal to the number of local rows, i.e `m`.
           For matrices you plan to factor you must leave room for the diagonal entry and
           put in the entry even if it is zero.
. o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
           submatrix (same value is used for all local rows).
- o_nnz - array containing the number of nonzeros in the various rows of the
           OFF-DIAGONAL portion of the local submatrix (possibly different for
           each row) or `NULL`, if `o_nz` is used to specify the nonzero
           structure. The size of this array is equal to the number
           of local rows, i.e `m`.

  Output Parameter:
. A - the matrix

  Options Database Keys:
+ -mat_no_inode            - Do not use inodes
- -mat_inode_limit <limit> - Sets inode limit (max limit=5)

  Level: intermediate

  Notes:
  If the *_nnz parameter is given then the *_nz parameter is ignored

  `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
  processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
  storage requirements for this matrix.

  If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
  processor than it must be used on all processors that share the object for
  that argument.

  The user MUST specify either the local or global matrix dimensions
  (possibly both).

  The parallel matrix is partitioned such that the first m0 rows belong to
  process 0, the next m1 rows belong to process 1, the next m2 rows belong
  to process 2 etc.. where m0,m1,m2... are the input parameter `m`.

  The DIAGONAL portion of the local submatrix of a processor can be defined
  as the submatrix which is obtained by extraction the part corresponding
  to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
  first row that belongs to the processor, and r2 is the last row belonging
  to the this processor. This is a square mxm matrix. The remaining portion
  of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.

  If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.

  When calling this routine with a single process communicator, a matrix of
  type `MATSEQAIJPERM` is returned.  If a matrix of type `MATMPIAIJPERM` is desired
  for this type of communicator, use the construction mechanism
.vb
   MatCreate(...,&A);
   MatSetType(A,MPIAIJ);
   MatMPIAIJSetPreallocation(A,...);
.ve

  By default, this format uses inodes (identical nodes) when possible.
  We search for consecutive rows with the same nonzero structure, thereby
  reusing matrix information to achieve increased efficiency.

.seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MATMPIAIJPERM`, `MatCreate()`, `MatCreateSeqAIJPERM()`, `MatSetValues()`
@*/
PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
{
  PetscMPIInt size;

  PetscFunctionBegin;
  PetscCall(MatCreate(comm, A));
  PetscCall(MatSetSizes(*A, m, n, M, N));
  PetscCallMPI(MPI_Comm_size(comm, &size));
  if (size > 1) {
    PetscCall(MatSetType(*A, MATMPIAIJPERM));
    PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
  } else {
    PetscCall(MatSetType(*A, MATSEQAIJPERM));
    PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJPERM(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
{
  Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;

  PetscFunctionBegin;
  PetscCall(MatMPIAIJSetPreallocation_MPIAIJ(B, d_nz, d_nnz, o_nz, o_nnz));
  PetscCall(MatConvert_SeqAIJ_SeqAIJPERM(b->A, MATSEQAIJPERM, MAT_INPLACE_MATRIX, &b->A));
  PetscCall(MatConvert_SeqAIJ_SeqAIJPERM(b->B, MATSEQAIJPERM, MAT_INPLACE_MATRIX, &b->B));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat A, MatType type, MatReuse reuse, Mat *newmat)
{
  Mat B = *newmat;

  PetscFunctionBegin;
  if (reuse == MAT_INITIAL_MATRIX) PetscCall(MatDuplicate(A, MAT_COPY_VALUES, &B));

  PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJPERM));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJPERM));
  *newmat = B;
  PetscFunctionReturn(PETSC_SUCCESS);
}

PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJPERM(Mat A)
{
  PetscFunctionBegin;
  PetscCall(MatSetType(A, MATMPIAIJ));
  PetscCall(MatConvert_MPIAIJ_MPIAIJPERM(A, MATMPIAIJPERM, MAT_INPLACE_MATRIX, &A));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*MC
   MATAIJPERM - "AIJPERM" - A matrix type to be used for sparse matrices.

   This matrix type is identical to `MATSEQAIJPERM` when constructed with a single process communicator,
   and `MATMPIAIJPERM` otherwise.  As a result, for single process communicators,
  `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
  for communicators controlling multiple processes.  It is recommended that you call both of
  the above preallocation routines for simplicity.

   Options Database Key:
. -mat_type aijperm - sets the matrix type to `MATAIJPERM`

  Level: beginner

.seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJPERM()`, `MATSEQAIJPERM`, `MATMPIAIJPERM`, `MATSEQAIJ`, `MATMPIAIJ`, `MATSEQAIJMKL`, `MATMPIAIJMKL`, `MATSEQAIJSELL`, `MATMPIAIJSELL`
M*/