/*
   Defines the abstract operations on AO (application orderings)
*/
#include <../src/vec/is/ao/aoimpl.h> /*I "petscao.h" I*/

/* Logging support */
PetscClassId  AO_CLASSID;
PetscLogEvent AO_PetscToApplication, AO_ApplicationToPetsc;

/*@
  AOView - Displays an application ordering.

  Collective

  Input Parameters:
+ ao     - the application ordering context
- viewer - viewer used for display

  Level: intermediate

  Options Database Key:
. -ao_view - calls `AOView()` at end of `AOCreate()`

  Notes:
  The available visualization contexts include
+     `PETSC_VIEWER_STDOUT_SELF` - standard output (default)
-     `PETSC_VIEWER_STDOUT_WORLD` - synchronized standard
  output where only the first processor opens
  the file.  All other processors send their
  data to the first processor to print.

  The user can open an alternative visualization context with
  `PetscViewerASCIIOpen()` - output to a specified file.

.seealso: [](sec_ao), `AO`, `PetscViewerASCIIOpen()`, `AOViewFromOptions()`
@*/
PetscErrorCode AOView(AO ao, PetscViewer viewer)
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)ao), &viewer));
  PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);

  PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)ao, viewer));
  PetscUseTypeMethod(ao, view, viewer);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOViewFromOptions - View an `AO` based on values in the options database

  Collective

  Input Parameters:
+ ao   - the application ordering context
. obj  - optional object that provides the prefix used to search the options database
- name - command line option

  Level: intermediate

.seealso: [](sec_ao), `AO`, `AOView()`, `PetscObjectViewFromOptions()`, `AOCreate()`
@*/
PetscErrorCode AOViewFromOptions(AO ao, PetscObject obj, const char name[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscCall(PetscObjectViewFromOptions((PetscObject)ao, obj, name));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AODestroy - Destroys an application ordering.

  Collective

  Input Parameter:
. ao - the application ordering context

  Level: beginner

.seealso: [](sec_ao), `AO`, `AOCreate()`
@*/
PetscErrorCode AODestroy(AO *ao)
{
  PetscFunctionBegin;
  if (!*ao) PetscFunctionReturn(PETSC_SUCCESS);
  PetscValidHeaderSpecific(*ao, AO_CLASSID, 1);
  if (--((PetscObject)*ao)->refct > 0) {
    *ao = NULL;
    PetscFunctionReturn(PETSC_SUCCESS);
  }
  /* if memory was published with SAWs then destroy it */
  PetscCall(PetscObjectSAWsViewOff((PetscObject)*ao));
  PetscCall(ISDestroy(&(*ao)->isapp));
  PetscCall(ISDestroy(&(*ao)->ispetsc));
  /* destroy the internal part */
  PetscTryTypeMethod(*ao, destroy);
  PetscCall(PetscHeaderDestroy(ao));
  PetscFunctionReturn(PETSC_SUCCESS);
}

#include <../src/vec/is/is/impls/general/general.h>

PETSC_INTERN PetscErrorCode ISSetUp_General(IS);

/*@
  AOPetscToApplicationIS - Maps an index set in the PETSc ordering to
  the application-defined ordering.

  Collective

  Input Parameters:
+ ao - the application ordering context
- is - the index set; this is replaced with its mapped values

  Output Parameter:
. is - the mapped index set

  Level: intermediate

  Notes:
  The index set cannot be of `ISType` `ISSTRIDE` or `ISBLOCK`.

  Any integers in is that are negative are left unchanged. This
  allows one to convert, for example, neighbor lists that use negative
  entries to indicate nonexistent neighbors due to boundary conditions etc.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOApplicationToPetsc()`,
          `AOApplicationToPetscIS()`, `AOPetscToApplication()`, `ISSTRIDE`, `ISBLOCK`
@*/
PetscErrorCode AOPetscToApplicationIS(AO ao, IS is)
{
  PetscInt  n;
  PetscInt *ia;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscValidHeaderSpecific(is, IS_CLASSID, 2);
  PetscCall(ISToGeneral(is));
  /* we cheat because we know the IS is general and that we can change the indices */
  PetscCall(ISGetIndices(is, (const PetscInt **)&ia));
  PetscCall(ISGetLocalSize(is, &n));
  PetscUseTypeMethod(ao, petsctoapplication, n, ia);
  PetscCall(ISRestoreIndices(is, (const PetscInt **)&ia));
  /* updated cached values (sorted, min, max, etc.)*/
  PetscCall(ISSetUp_General(is));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOApplicationToPetscIS - Maps an index set in the application-defined
  ordering to the PETSc ordering.

  Collective

  Input Parameters:
+ ao - the application ordering context
- is - the index set; this is replaced with its mapped values

  Output Parameter:
. is - the mapped index set

  Level: beginner

  Notes:
  The index set cannot be of `ISType` `ISSTRIDE` or `ISBLOCK`

  Any integers in is that are negative are left unchanged. This
  allows one to convert, for example, neighbor lists that use negative
  entries to indicate nonexistent neighbors due to boundary conditions, etc.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOPetscToApplication()`,
          `AOPetscToApplicationIS()`, `AOApplicationToPetsc()`, `ISSTRIDE`, `ISBLOCK`
@*/
PetscErrorCode AOApplicationToPetscIS(AO ao, IS is)
{
  PetscInt n, *ia;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscValidHeaderSpecific(is, IS_CLASSID, 2);
  PetscCall(ISToGeneral(is));
  /* we cheat because we know the IS is general and that we can change the indices */
  PetscCall(ISGetIndices(is, (const PetscInt **)&ia));
  PetscCall(ISGetLocalSize(is, &n));
  PetscUseTypeMethod(ao, applicationtopetsc, n, ia);
  PetscCall(ISRestoreIndices(is, (const PetscInt **)&ia));
  /* updated cached values (sorted, min, max, etc.)*/
  PetscCall(ISSetUp_General(is));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOPetscToApplication - Maps a set of integers in the PETSc ordering to
  the application-defined ordering.

  Collective

  Input Parameters:
+ ao - the application ordering context
. n  - the number of integers
- ia - the integers; these are replaced with their mapped value

  Output Parameter:
. ia - the mapped integers

  Level: beginner

  Note:
  Any integers in `ia` that are negative are left unchanged. This
  allows one to convert, for example, neighbor lists that use negative
  entries to indicate nonexistent neighbors due to boundary conditions, etc.

  Integers that are out of range are mapped to -1

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOApplicationToPetsc()`,
          `AOPetscToApplicationIS()`
@*/
PetscErrorCode AOPetscToApplication(AO ao, PetscInt n, PetscInt ia[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  if (n) PetscAssertPointer(ia, 3);
  PetscUseTypeMethod(ao, petsctoapplication, n, ia);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOApplicationToPetsc - Maps a set of integers in the application-defined
  ordering to the PETSc ordering.

  Collective

  Input Parameters:
+ ao - the application ordering context
. n  - the number of integers
- ia - the integers; these are replaced with their mapped value

  Output Parameter:
. ia - the mapped integers

  Level: beginner

  Notes:
  Any integers in `ia` that are negative are left unchanged. This
  allows one to convert, for example, neighbor lists that use negative
  entries to indicate nonexistent neighbors due to boundary conditions, etc.

  Integers that are out of range are mapped to -1

.seealso: [](sec_ao), `AOCreateBasic()`, `AOView()`, `AOPetscToApplication()`,
          `AOPetscToApplicationIS()`
@*/
PetscErrorCode AOApplicationToPetsc(AO ao, PetscInt n, PetscInt ia[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  if (n) PetscAssertPointer(ia, 3);
  PetscUseTypeMethod(ao, applicationtopetsc, n, ia);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOPetscToApplicationPermuteInt - Permutes an array of blocks of integers
  in the PETSc ordering to the application-defined ordering.

  Collective

  Input Parameters:
+ ao    - The application ordering context
. block - The block size
- array - The integer array

  Output Parameter:
. array - The permuted array

  Level: beginner

  Notes:
  The length of the array should be $block*N$, where `N` is length
  provided to the AOCreate*() method that created the `AO`.

  The permutation takes `array[i_pet] --> array[i_app]`, where `i_app` is
  the index of `i` in the application ordering and `i_pet` is the index
  of `i` in the PETSc ordering.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOApplicationToPetsc()`, `AOPetscToApplicationIS()`
@*/
PetscErrorCode AOPetscToApplicationPermuteInt(AO ao, PetscInt block, PetscInt array[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscAssertPointer(array, 3);
  PetscUseTypeMethod(ao, petsctoapplicationpermuteint, block, array);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOApplicationToPetscPermuteInt - Permutes an array of blocks of integers
  in the application-defined ordering to the PETSc ordering.

  Collective

  Input Parameters:
+ ao    - The application ordering context
. block - The block size
- array - The integer array

  Output Parameter:
. array - The permuted array

  Level: beginner

  Notes:
  The length of the array should be $ block*N $, where `N` is length
  provided to the AOCreate*() method that created the `AO`.

  The permutation takes `array[i_app] --> array[i_pet]`, where `i_app` is
  the index of `i` in the application ordering and `i_pet` is the index
  of `i` in the PETSc ordering.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOPetscToApplicationIS()`, `AOApplicationToPetsc()`
@*/
PetscErrorCode AOApplicationToPetscPermuteInt(AO ao, PetscInt block, PetscInt array[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscAssertPointer(array, 3);
  PetscUseTypeMethod(ao, applicationtopetscpermuteint, block, array);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOPetscToApplicationPermuteReal - Permutes an array of blocks of reals
  in the PETSc ordering to the application-defined ordering.

  Collective

  Input Parameters:
+ ao    - The application ordering context
. block - The block size
- array - The integer array

  Output Parameter:
. array - The permuted array

  Level: beginner

  Notes:
  The length of the array should be $block*N$, where `N` is length
  provided to the AOCreate*() method that created the `AO`.

  The permutation takes `array[i_pet] --> array[i_app]`, where `i_app` is
  the index of `i` in the application ordering and `i_pet` is the index
  of `i` in the PETSc ordering.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOApplicationToPetsc()`, `AOPetscToApplicationIS()`
@*/
PetscErrorCode AOPetscToApplicationPermuteReal(AO ao, PetscInt block, PetscReal array[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscAssertPointer(array, 3);
  PetscUseTypeMethod(ao, petsctoapplicationpermutereal, block, array);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOApplicationToPetscPermuteReal - Permutes an array of blocks of reals
  in the application-defined ordering to the PETSc ordering.

  Collective

  Input Parameters:
+ ao    - The application ordering context
. block - The block size
- array - The integer array

  Output Parameter:
. array - The permuted array

  Level: beginner

  Notes:
  The length of the array should be $block*N$, where `N` is length
  provided to the AOCreate*() method that created the `AO`.

  The permutation takes `array[i_app] --> array[i_pet]`, where `i_app` is
  the index of `i` in the application ordering and `i_pet` is the index
  of `i` in the PETSc ordering.

.seealso: [](sec_ao), `AO`, `AOCreateBasic()`, `AOView()`, `AOApplicationToPetsc()`, `AOPetscToApplicationIS()`
@*/
PetscErrorCode AOApplicationToPetscPermuteReal(AO ao, PetscInt block, PetscReal array[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);
  PetscAssertPointer(array, 3);
  PetscUseTypeMethod(ao, applicationtopetscpermutereal, block, array);
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOSetFromOptions - Sets `AO` options from the options database.

  Collective

  Input Parameter:
. ao - the application ordering

  Options Database Key:
. -ao_type <basic, memoryscalable> - sets the type of the `AO`

  Level: beginner

.seealso: [](sec_ao), `AO`, `AOCreate()`, `AOSetType()`, `AODestroy()`, `AOPetscToApplication()`, `AOApplicationToPetsc()`
@*/
PetscErrorCode AOSetFromOptions(AO ao)
{
  char        type[256];
  const char *def = AOBASIC;
  PetscBool   flg;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(ao, AO_CLASSID, 1);

  PetscObjectOptionsBegin((PetscObject)ao);
  PetscCall(PetscOptionsFList("-ao_type", "AO type", "AOSetType", AOList, def, type, 256, &flg));
  if (flg) {
    PetscCall(AOSetType(ao, type));
  } else if (!((PetscObject)ao)->type_name) {
    PetscCall(AOSetType(ao, def));
  }
  PetscOptionsEnd();
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOSetIS - Sets the `IS` associated with the application ordering.

  Collective

  Input Parameters:
+ ao      - the application ordering
. isapp   - index set that defines an ordering
- ispetsc - index set that defines another ordering (may be `NULL` to use the natural ordering)

  Level: beginner

  Note:
  This routine increases the reference count of `isapp` and `ispetsc` so you may/should destroy these arguments after this call
  if you no longer need them

.seealso: [](sec_ao), [](sec_scatter), `AO`, `AOCreate()`, `AODestroy()`, `AOPetscToApplication()`, `AOApplicationToPetsc()`
@*/
PetscErrorCode AOSetIS(AO ao, IS isapp, IS ispetsc)
{
  PetscFunctionBegin;
  if (ispetsc) {
    PetscInt napp, npetsc;
    PetscCall(ISGetLocalSize(isapp, &napp));
    PetscCall(ISGetLocalSize(ispetsc, &npetsc));
    PetscCheck(napp == npetsc, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "napp %" PetscInt_FMT " != npetsc %" PetscInt_FMT ". Local IS lengths must match", napp, npetsc);
  }
  if (isapp) PetscCall(PetscObjectReference((PetscObject)isapp));
  if (ispetsc) PetscCall(PetscObjectReference((PetscObject)ispetsc));
  PetscCall(ISDestroy(&ao->isapp));
  PetscCall(ISDestroy(&ao->ispetsc));
  ao->isapp   = isapp;
  ao->ispetsc = ispetsc;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  AOCreate - Creates an application ordering. That is an object that maps from an application ordering to a PETSc ordering and vice versa

  Collective

  Input Parameter:
. comm - MPI communicator that is to share the `AO`

  Output Parameter:
. ao - the new application ordering

  Options Database Key:
+ -ao_type <aotype> - create `AO` with particular format
- -ao_view          - call `AOView()` at the conclusion of `AOCreate()`

  Level: beginner

.seealso: [](sec_ao), `AO`, `AOView()`, `AOSetIS()`, `AODestroy()`, `AOPetscToApplication()`, `AOApplicationToPetsc()`
@*/
PetscErrorCode AOCreate(MPI_Comm comm, AO *ao)
{
  AO aonew;

  PetscFunctionBegin;
  PetscAssertPointer(ao, 2);
  PetscCall(AOInitializePackage());

  PetscCall(PetscHeaderCreate(aonew, AO_CLASSID, "AO", "Application Ordering", "AO", comm, AODestroy, AOView));
  *ao = aonew;
  PetscFunctionReturn(PETSC_SUCCESS);
}