refactor(newt): Initialize defaults directly into newtonian_ig_ctx

Merge MR !144, 'jrwrigh/fix_newtonian_component_naming', into 'main'

fix: Correctly set component labels by state variables

See merge request phypid/honee!144

fix: Correctly set component labels by state variables

Bug introduced in !139 accidentally set the component names before the
state variable option was read in, therefore it always printed out the
c

fix: Correctly set component labels by state variables

Bug introduced in !139 accidentally set the component names before the
state variable option was read in, therefore it always printed out the
conservative variable labels.

In addition to fixing this, I did quite a bit of reorganization of the
`NS_NEWTONIAN_IG()` function.

show more ...

Merge MR !143, 'jrwrigh/memtype_func_name', into 'main'

fix(matceed): Change function name to avoid PETSc conflict

See merge request phypid/honee!143

fix(matceed): Change function name to avoid PETSc conflict

PETSc introduced a `MatGetMemTypeFromVecType()` function in
https://gitlab.com/petsc/petsc/-/merge_requests/8505, so we need to
change the

fix(matceed): Change function name to avoid PETSc conflict

PETSc introduced a `MatGetMemTypeFromVecType()` function in
https://gitlab.com/petsc/petsc/-/merge_requests/8505, so we need to
change the function to match

show more ...

test(smartsim): Add test for smartsim solution addition

feat(smarsim): Add solution writing for smartsim

Also includes some other significant refactors, such has moving some
functions to `smartsim-impl.h` and using `smartsim.h` to host setup and
TSMonito

feat(smarsim): Add solution writing for smartsim

Also includes some other significant refactors, such has moving some
functions to `smartsim-impl.h` and using `smartsim.h` to host setup and
TSMonitor functions.

show more ...

feat(honee): Add ceed.h to honee.h

Merge MR !141, 'jrwrigh/split_newtonian', into 'main'

fix(newt): Initialization of sigma variable

See merge request phypid/honee!141

fix(newt): Initialization of sigma variable

Not necessary, but quiets the linters

Merge MR !139, 'jrwrigh/split_newtonian', into 'main'

feat: Split Newtonian integrands into separate helper functions

Closes #39

See merge request phypid/honee!139

doc: Better document Linear Ramp Coefficient

refactor: Use SetValueN instead of manual for loop zeroing

feat(newt): Extract Newtonian and IDL jacobian functions

refactor(newt): Refactor the extracted IFunction, add docstrings

feat(newt): Extract Newtonian and IDL Integrand functions

feat(qf_utils): Add AXPY

feat(newt): Add const qualifiers to helper functions

Merge MR !138, 'jrwrigh/pedantic_flags', into 'main'

fix: Enable pedantic flags

See merge request phypid/honee!138

fix: Enable pedantic flags

- These were accidentally not actually set to the compilation flags

Merge MR !137, 'jrwrigh/problem_components', into 'main'

feat: Set number of components in problem setup

Closes #37

See merge request phypid/honee!137

Merge MR !136, 'Amin/mean_only_fix', into 'main'

Amin/mean only fix

Closes #36

See merge request phypid/honee!136

(!136) Amin/mean only fix

feat: Set number of components in problem setup

Same with the name of those components

Merge MR !135, 'jrwrigh/strong_bc_setup_fix', into 'main'

bc(strong_ceed): Use face_orientation_label for all element restrictions

See merge request phypid/honee!135