Extend the number of tests done by the CUDA gcov job

Add coverage to several new packages

Merge branch 'barry/2022-09-03/add-emcc' into 'main'

Get PETSc building and running with emcc

See merge request petsc/petsc!5588

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/avoid-ftn-line-truncation-with-check' into 'release'

build: also avoid fortran truncation error with 'make check'

See merge request petsc/petsc!5750

Merge branch 'jacobf/2022-10-07/gcovr' into 'main'

Feature: Gcovr

Closes #1260

See merge request petsc/petsc!5729

Merge remote-tracking branch 'origin/release'

CI: add linux-emcc

Ref: https://emscripten.org/docs/getting_started/downloads.html

Replace old gcov infrastructure with gcovr

build: also avoid fortran truncation error with 'make check'

Merge branch 'balay/avoid-ftn-line-truncation' into 'release'

PetscCall: avoid in fortran source files - fixes line truncation errors when...

See merge request petsc/petsc!5747

PetscCall: avoid in fortran source files - fixes line truncation errors when FFLAGS is set [and configure is unable to set -ffree-line-length-none]

CI: test empty FFLAGS to avoid this breakage

PetscCall: avoid in fortran source files - fixes line truncation errors when FFLAGS is set [and configure is unable to set -ffree-line-length-none]

CI: test empty FFLAGS to avoid this breakage


FC arch-linux-c-debug/obj/sys/f90-mod/petscsysmod.o
/home/balay/petsc/src/sys/f90-mod/petscsysmod.F90:369:132:

369 | PetscCall(PetscInitializeF(trim(filename),PETSC_NULL_CHARACTER,PETSC_TRUE,ierr))
| 1
Error: Line truncated at (1) [-Werror=line-truncation]

show more ...

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/fixes' into 'release'

CI docs: rm .doctrees to reduce upload size - avoids: "pages: deploy -...

See merge request petsc/petsc!5701

CI docs: rm .doctrees to reduce upload size - avoids: "pages: deploy - artifacts for pages too large" error
- use '-j 1' - avoids bloated builds 590M -> 6.6G
- set all artifacts to expire

Merge branch 'balay/ci-gcc12' into 'main'

CI: switch stage-1 jobs to use gcc-12

See merge request petsc/petsc!5653

CI: switch stage-1 to use gcc-12

And Use -O instead of -O3, this fixes:

CC arch-linux-c-opt/obj/sys/memory/mtr.o
In file included from /scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/

CI: switch stage-1 to use gcc-12

And Use -O instead of -O3, this fixes:

CC arch-linux-c-opt/obj/sys/memory/mtr.o
In file included from /scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/include/petscsys.h:1184,
from /scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/include/petsc/private/petscimpl.h:7,
from /scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/src/sys/memory/mtr.c:5:
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/src/sys/memory/mtr.c: In function 'PetscMallocView':
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/src/sys/memory/mtr.c:916:13: error: 'PetscSortStrWithPermutation' accessing 4 bytes in a region of size 0 [-Werror=stringop-overflow=]
916 | PetscCall(PetscSortStrWithPermutation(n, (const char **)shortfunction, perm));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/include/petscerror.h:435:17: note: in definition of macro 'PetscCall'
435 | ierr_q_ = __VA_ARGS__; \
| ^~~~~~~~~~~
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/src/sys/memory/mtr.c:916:13: note: referencing argument 3 of type 'PetscInt[0]' {aka 'int[]'}
916 | PetscCall(PetscSortStrWithPermutation(n, (const char **)shortfunction, perm));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/include/petscerror.h:435:17: note: in definition of macro 'PetscCall'
435 | ierr_q_ = __VA_ARGS__; \
| ^~~~~~~~~~~
/scratch/svcpetsc/glci-builds/t7AQTxpb/2/petsc/petsc/include/petscsys.h:2340:29: note: in a call to function 'PetscSortStrWithPermutation'
2340 | PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt, const char *[], PetscInt[]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~

show more ...

CI: win01 is misbehaving - so temporarily move mswin-opt-impi from stage2 to stage3

Merge remote-tracking branch 'origin/release'

Merge branch 'balay/ci-knl-migrate' into 'release'

CI: migrate KNL jobs [from centos7 to ubuntu-22.04]

See merge request petsc/petsc!5675

CI: migrate KNL jobs [from centos7 to ubuntu-22.04]

Temporarily remove -xMIC-AVX512 as it causes:

Program received signal SIGILL, Illegal instruction.
0x00007ffff0b1fade in __svml_log8_mask_b3 () f

CI: migrate KNL jobs [from centos7 to ubuntu-22.04]

Temporarily remove -xMIC-AVX512 as it causes:

Program received signal SIGILL, Illegal instruction.
0x00007ffff0b1fade in __svml_log8_mask_b3 () from /nfs/gce/software/custom/linux-ubuntu22.04-x86_64/spack/opt/spack/linux-ubuntu22.04-x86_64/gcc-11.2.0/intel-oneapi-compilers-2022.0.2-jleps6v/compiler/2022.0.2/l
inux/compiler/lib/intel64_lin/libsvml.so

show more ...

Merge branch 'jacobf/2022-09-21/2-bike-2-shed' into 'main'

Feature: Bicycle Storage Facility 2

See merge request petsc/petsc!5661

update to clang-format 15

Merge branch 'barry/2022-09-09/cleanup-matlab-configure' into 'main'

minor cleanup for matlab engine

See merge request petsc/petsc!5608

configure for checkbadSource may crash so need to list the log files as artifacts so users can debug