Update gitcommit for package CAMS

Update GSL download

/spend 5m

configure: update HPDDM

Merge branch 'wence/petsc-check-do-while' into 'main'

Wrap PetscCheck and PetscAssert in do { } while (0)

Closes #1199

See merge request petsc/petsc!5291

Packages: upgrade Kokkos and KK to 3.6.01

exodusII: update to most recent tag
netcdf: update to version 4.9.0
- ADIOS: update to latest/master snapshot to fix build error with latest netcdf
- MOAB: switch to tarball - to avoid autoconf (old)

exodusII: update to most recent tag
netcdf: update to version 4.9.0
- ADIOS: update to latest/master snapshot to fix build error with latest netcdf
- MOAB: switch to tarball - to avoid autoconf (old) version dependency
- CI: switch linux-pkgs-cxx-mlib to u22 test box to avoid errors of the following type from moab [with the newer netcdf version]

/usr/bin/ld: warning: libnetcdf.so.13, needed by //usr/lib/x86_64-linux-gnu/libnetcdf_c++.so.4, may conflict with libnetcdf.so.19

Co-Authored-by: Satish Balay <balay@mcs.anl.gov>

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Merge branch 'knepley/feature-plex-periodic-separation' into 'main'

Fix periodicity for higher order coordinates

See merge request petsc/petsc!5333

Merge branch 'barry/2022-06-19/improve-configure-logs' into 'main'

Remove some confusing and unneeded noise output in configure.log

See merge request petsc/petsc!5352

Update p4est and simplify coordinate localization for p4est meshes

The update to p4est guarantees that a vertex on a periodic boundary
receives the same coordinates on each process.

The new localiz

Update p4est and simplify coordinate localization for p4est meshes

The update to p4est guarantees that a vertex on a periodic boundary
receives the same coordinates on each process.

The new localization takes advantage of p4est's built-in DG coordinates
for quadrants and octants.

Rename variables for consistency

Squashme: update p4est version

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Configure: Fix Autoconf test for new versions

Indent logging for searching for programs to have clearer configure.log

I know there is some way to do this systematically but I could not figure it out easily

Someone who understands the indentati

Indent logging for searching for programs to have clearer configure.log

I know there is some way to do this systematically but I could not figure it out easily

Someone who understands the indentation system could vastly improve the readability of configure.log too man inner actions
are listed all the way to the left in configure.log making it harder to understand the flow of the processing

Commit-type: configure
/spend 1m

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Reduce calls to uname -s in configure from potentially hundreds to 1

Commit-type: configure
/spend 20m

Update SLEPc

Run mpi compiler wrapper with -show to gain more debugging information when compiler test fails for MPI wrapper

Commit-type: configure, debugability
/spend 10m
Reported-by: TAY wee-beng <zonexo@gmai

Run mpi compiler wrapper with -show to gain more debugging information when compiler test fails for MPI wrapper

Commit-type: configure, debugability
/spend 10m
Reported-by: TAY wee-beng <zonexo@gmail.com>

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Remove some confusing and unneeded noise output in configure.log

add missing doc for many configure methods so that configure.log has clear explanation for more tests it runs

Commit-type: configure

Remove some confusing and unneeded noise output in configure.log

add missing doc for many configure methods so that configure.log has clear explanation for more tests it runs

Commit-type: configure, usability
/spend 2h

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configure: hypre 2.25.0

Improve error messages for Sowing configure failure

Commit-type: usability, configure
/spend 5m
Reported-by: Sidarth Narayanan <snarayanan1@altair.com>

Merge remote-tracking branch 'origin/release'

Merge branch 'jczhang/fix-kokkos-libdl' into 'main'

Partially revert -DKokkos_ENABLE_LIBDL=OFF, since this workaround is only need for CUDA

See merge request petsc/petsc!5308

build: use @file linker option in the shared library target - to avoid a very long link command

As this feature uses gnumake $(file) syntax supported by version 4.0+ - add in GMAKE4 flg to simplify

build: use @file linker option in the shared library target - to avoid a very long link command

As this feature uses gnumake $(file) syntax supported by version 4.0+ - add in GMAKE4 flg to simplify code

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Config: the -DKokkos_ENABLE_LIBDL=OFF workaround is only need for CUDA.

See also !4890

Merge branch 'barry/2022-05-27/avoid-cmake-findmpi-bug-mpi-c-compiler/release' into 'release'

Workaround for bug in CMake findMPI

See merge request petsc/petsc!5288

Merge branch 'release'

configure: fix CI build error on theta

this fixes a bug in 881043b10f9b5ab58b2e279ce22dcee11b3e02f2

Merge branch 'barry/2022-05-24/add-petsccall-fortran-examples' into 'main'

Update all Fortran examples to modern error checking with PetscCallXXX() wrappers around PETSc/MPI function calls.

See mer

Merge branch 'barry/2022-05-24/add-petsccall-fortran-examples' into 'main'

Update all Fortran examples to modern error checking with PetscCallXXX() wrappers around PETSc/MPI function calls.

See merge request petsc/petsc!5271

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