Config: check MPI_Win_allocate etc MPI3 routines

Fix build failure on theta triggered by 36c166f2bbb44c2987d8fb7385fbe9e2d1cfb0c8

Warning:
-dynamic was already seen on command line, overriding with -shared.

/usr/lib64/gcc/x86_64-suse-linux/7/../.

Fix build failure on theta triggered by 36c166f2bbb44c2987d8fb7385fbe9e2d1cfb0c8

Warning:
-dynamic was already seen on command line, overriding with -shared.

/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: /opt/cray/pe/atp/3.8.1/lib/libAtpSigHandler.a(libAtpSigHandler_la-libAtpSigHandler.o): in function `(anonymous namespace)::get_frontend_a\
ddrinfo(char const*, char const*)':
(.text+0xb2d): warning: Using 'getaddrinfo' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking


/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: warning: alignment 8 of symbol `ARCHITECTURE' in main/user_params.o is smaller than 32 in /opt/cray/pe/pmi/5.0.16/lib64/libpmi.a(_pmi_top\
ology_discovery.o)

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gcc-6.5.0 selectively gives warnings on -Wno-stringop-overflow - breaking configure

balay@compute-386-02:~/junk$ gcc -c -Wall -Wno-stringop-overflow foo.c
balay@compute-386-02:~/junk$ gcc -c -Wall -

gcc-6.5.0 selectively gives warnings on -Wno-stringop-overflow - breaking configure

balay@compute-386-02:~/junk$ gcc -c -Wall -Wno-stringop-overflow foo.c
balay@compute-386-02:~/junk$ gcc -c -Wall -Wno-stringop-overflow conftest.c
conftest.c: In function 'main':
conftest.c:5:11: warning: variable 'x' set but not used [-Wunused-but-set-variable]
float x[2],y;
^
conftest.c: At top level:
cc1: warning: unrecognized command line option '-Wno-stringop-overflow'

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fix gcc-11 warnings for -Wstringop-overflow - however can't fix MPI calls - so also use -Wno-stringop-overflow

fix gcc-11 warnings for -Wmisleading-indentation - however we are using this format - so also use -Wno-misleading-indentation

Merge remote-tracking branch 'origin/release'

Add linker filter for Microsoft compilers that print various messages when linking
Add linking filter for multiple libgfortran

Commit-type: error-checking, portability-fix
/spend 25m

Turn back on filtering of linker output instead of just dropping all output (which may be error messages)

This is in response to https://gitlab.com/petsc/petsc/-/merge_requests/3703#note_548743488

Turn back on filtering of linker output instead of just dropping all output (which may be error messages)

This is in response to https://gitlab.com/petsc/petsc/-/merge_requests/3703#note_548743488

There is the possibility this is too fragile for all the compilers and compiler versions of user but it is
the systematic way to handle linker output that may trigger error conditions but is really only a warning.

Commit-type: error-checking, configure, CI

Reported-by: Satish Balay <balay@mcs.anl.gov>
/spend 2h

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Merge remote-tracking branch 'origin/release'

doc: fix strings to not use 'sorry'

Turn off gcov for GPU languages; fix typos in configure code

Stop the configure process if the user provides incorrect compiler flags instead of silently ignoring them

Commit-type: error-checking, feature, configure
/spend 45m
Reported-by: Milan Pelletier <mi

Stop the configure process if the user provides incorrect compiler flags instead of silently ignoring them

Commit-type: error-checking, feature, configure
/spend 45m
Reported-by: Milan Pelletier <milan.pelletier@protonmail.com>

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Merge remote-tracking branch 'origin/release'

Merge branch 'knepley-release-patch-64569' into 'release'

Configure: Fix ExodusII for the case of no Fortran

See merge request petsc/petsc!3825

Merge branch 'balay/cygwin-download-mpich-check' into 'release'

cygwin: disable --download-mpich - it does not work anymore. Also add similar...

See merge request petsc/petsc!3823

Merge branch 'balay/fix-boost' into 'release'

boost: fix build failure on macOS by updating to newer version - as old

See merge request petsc/petsc!3832

Merge branch 'jolivet/fix-git-error-redirect' into 'release'

configure: errors with ancient Git + GitLab URL

See merge request petsc/petsc!3824

Merge branch 'barry/2021-04-04/auto-kokkos-arch/release' into 'release'

Automatically add the appropriate Kokkos CUDA arch when not supplied by user

See merge request petsc/petsc!3817

Automatically add the appropriate Kokkos CUDA arch when not supplied by user

boost: fix build failure on macOS by updating to newer version - as old version doesn't accept CFLAGS=-Wno-implicit-function-declaration

Also add eigen to osx builds

Reported-by: "Constantinescu, E

boost: fix build failure on macOS by updating to newer version - as old version doesn't accept CFLAGS=-Wno-implicit-function-declaration

Also add eigen to osx builds

Reported-by: "Constantinescu, Emil M." <emconsta@anl.gov>

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Configure: Fix ExodusII for the case of no Fortran

configure: errors with ancient Git + GitLab URL

Closes #871

Merge remote-tracking branch 'origin/release'

cygwin: disable --download-mpich - it does not work anymore. Also add similar check for --download-openmpi

Iterate back through CUDA generations until cuda.py finds one that works.