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b14b7b5b24-Mar-2021 Stefano Zampini <stefano.zampini@gmail.com>

configure: Fix regression when checking header inclusion of c++11 external packages


config/compilers.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/PETSc/options/sharedLibraries.py
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/dll/reg.c
/petsc/src/tao/interface/dlregistao.c
/petsc/src/ts/impls/glee/glee.c
7638c05313-Mar-2021 Pierre Jolivet <pierre@joliv.et>

Bump OpenMPI, [Par]Mmg, SLEPc, and HPDDM


config/packages/OpenMPI.py
config/packages/hpddm.py
config/packages/mmg.py
config/packages/parmmg.py
config/packages/slepc.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/PETSc/options/sharedLibraries.py
/petsc/include/petsc/private/petschpddm.h
/petsc/lib/petsc/conf/rules
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/dll/reg.c
/petsc/src/tao/interface/dlregistao.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/tutorials/network/wash/pipes1.c
/petsc/src/vec/is/sf/interface/sf.c
0a60567c24-Mar-2021 Jed Brown <jed@jedbrown.org>

config: upgrade to blis-0.8.1


config/packages/blis.py
6471679724-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


config/framework.py
config/setCompilers.py
d4f378c624-Mar-2021 Satish Balay <balay@mcs.anl.gov>

makefiles: prefer bash as default shell

Reported-by: Jose E. Roman <jroman@dsic.upv.es>


config/programs.py
/petsc/src/docs/sphinx_docs/conf.py
/petsc/src/docs/sphinx_docs/contact/mailing_documentation.rst
/petsc/src/docs/sphinx_docs/contact/petsc_team.rst
/petsc/src/docs/sphinx_docs/developers/buildsystem.rst
/petsc/src/docs/sphinx_docs/developers/callbacks.rst
/petsc/src/docs/sphinx_docs/developers/documentation.rst
/petsc/src/docs/sphinx_docs/developers/images/callbacks1.svg
/petsc/src/docs/sphinx_docs/developers/images/callbacks1.tex
/petsc/src/docs/sphinx_docs/developers/images/callbacks2.svg
/petsc/src/docs/sphinx_docs/developers/images/callbacks2.tex
/petsc/src/docs/sphinx_docs/developers/style.rst
/petsc/src/docs/sphinx_docs/ext/html5_petsc.py
/petsc/src/docs/sphinx_docs/faq/index.rst
/petsc/src/docs/sphinx_docs/install/install_documentation.rst
/petsc/src/docs/sphinx_docs/install/install_tutorial.rst
/petsc/src/docs/sphinx_docs/install/license_documentation.rst
/petsc/src/docs/sphinx_docs/manual/tests.rst
/petsc/src/docs/sphinx_docs/overview/gpu_roadmap_documentation.rst
/petsc/src/docs/sphinx_docs/requirements.txt
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/tutorials/ex75.c
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex76f.F90
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/ksp/tutorials/ex77f.F90
/petsc/src/mat/tests/ex238.c
/petsc/src/snes/tutorials/ex12.c
/petsc/src/snes/tutorials/ex56.c
4105fb7323-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2021-03-10/handle-pie-flag-conda/release' into 'release'

Attempt to have configure handle -pie passed in by MPI compiler or as LDFLAG

See merge request petsc/petsc!3703


config/framework.py
config/setCompilers.py
/petsc/src/dm/impls/plex/plex.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
9059168d22-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge branch 'PR--petsc4py-honor-DESTDIR' into 'main'

config: petsc4py: honor DESTDIR make var for install staging path

See merge request petsc/petsc!3738


config/packages/mpi4py.py
config/packages/petsc4py.py
/petsc/include/petsc/private/logimpl.h
/petsc/include/petsc/private/pcasmimpl.h
/petsc/include/petscviewer.h
/petsc/lib/petsc/bin/xml2flamegraph.py
/petsc/src/docs/sphinx_docs/manual/profiling.rst
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex60_0.out
/petsc/src/ksp/ksp/tests/output/ex60_0_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_0_kokkos.out
/petsc/src/ksp/ksp/tests/output/ex60_1.out
/petsc/src/ksp/ksp/tests/output/ex60_1_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_1_kokkos.out
/petsc/src/ksp/ksp/tests/output/ex60_2.out
/petsc/src/ksp/ksp/tests/output/ex60_2_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_2_kokkos.out
/petsc/src/ksp/ksp/tutorials/ex7.c
/petsc/src/ksp/ksp/tutorials/ex7f.F90
/petsc/src/ksp/ksp/tutorials/output/ex12_2.out
/petsc/src/ksp/ksp/tutorials/output/ex12_3.out
/petsc/src/ksp/ksp/tutorials/output/ex2_bjacobi_2.out
/petsc/src/ksp/ksp/tutorials/output/ex43_5.out
/petsc/src/ksp/ksp/tutorials/output/ex43_6.out
/petsc/src/ksp/ksp/tutorials/output/ex56_1.out
/petsc/src/ksp/ksp/tutorials/output/ex56_latebs-2.out
/petsc/src/ksp/ksp/tutorials/output/ex56_latebs.out
/petsc/src/ksp/ksp/tutorials/output/ex67_transpose_asm.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaij.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpiaijcrl.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpiaijperm.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpicrl.out
/petsc/src/ksp/ksp/tutorials/output/ex7_2.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-2.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-2.out
/petsc/src/ksp/ksp/tutorials/output/ex7f_2.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.h
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
/petsc/src/snes/tutorials/output/ex12_tri_q2q1_asm_lu.out
/petsc/src/snes/tutorials/output/ex12_tri_q2q1_asm_sor.out
/petsc/src/snes/tutorials/output/ex12_tri_q2q1_msm_lu.out
/petsc/src/snes/tutorials/output/ex12_tri_q2q1_msm_sor.out
/petsc/src/snes/tutorials/output/ex19_10.out
/petsc/src/snes/tutorials/output/ex19_13.out
/petsc/src/snes/tutorials/output/ex19_7.out
/petsc/src/snes/tutorials/output/ex19_9.out
/petsc/src/snes/tutorials/output/ex19_asm_matconvert.out
/petsc/src/snes/tutorials/output/ex19_bcgsl.out
/petsc/src/snes/tutorials/output/ex19_ibcgs.out
/petsc/src/snes/tutorials/output/ex19_mpibaijmkl.out
/petsc/src/snes/tutorials/output/ex19_ngmres_fas_ms.out
/petsc/src/snes/tutorials/output/ex19_tut_1.out
/petsc/src/snes/tutorials/output/ex48_4.out
/petsc/src/snes/tutorials/output/ex5_5.out
/petsc/src/snes/tutorials/output/ex5_5_aspin.out
/petsc/src/snes/tutorials/output/ex5_asm_0.out
/petsc/src/snes/tutorials/output/ex5_asm_1.out
/petsc/src/snes/tutorials/output/ex5_asm_2.out
/petsc/src/snes/tutorials/output/ex5_asm_3.out
/petsc/src/snes/tutorials/output/ex5_asm_4.out
/petsc/src/snes/tutorials/output/ex5_asm_5.out
/petsc/src/snes/tutorials/output/ex5_asm_5_alt.out
/petsc/src/snes/tutorials/output/ex5_msm_0.out
/petsc/src/snes/tutorials/output/ex5_msm_1.out
/petsc/src/snes/tutorials/output/ex5_msm_2.out
/petsc/src/snes/tutorials/output/ex5_msm_3.out
/petsc/src/snes/tutorials/output/ex5_msm_4.out
/petsc/src/snes/tutorials/output/ex5_msm_5.out
/petsc/src/snes/tutorials/output/ex5_msm_5_alt.out
/petsc/src/snes/tutorials/output/ex63_quad_q2q1_full_P2.out
/petsc/src/snes/tutorials/output/ex63_quad_q2q1_full_P5.out
/petsc/src/sys/classes/viewer/interface/viewa.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/xmllogevent.c
/petsc/src/sys/objects/init.c
/petsc/src/tao/bound/tutorials/output/plate2_3.out
/petsc/src/tao/bound/tutorials/output/plate2_4.out
/petsc/src/tao/unconstrained/tutorials/output/minsurf2_2.out
/petsc/src/ts/tests/output/ex21_2_bdf_ngmres_fas_ms.out
/petsc/src/ts/tests/output/ex21_2_bdf_ngmres_fas_ngs.out
3859925b22-Mar-2021 Alexei Colin <acolin@isi.edu>

config: mpi4py: remove code duplication in install path

Factor the path expression into installLibPath variable
and use that variable in all places.

Also, remove unused `pp` variable.

Signed-off-b

config: mpi4py: remove code duplication in install path

Factor the path expression into installLibPath variable
and use that variable in all places.

Also, remove unused `pp` variable.

Signed-off-by: Alexei Colin <acolin@isi.edu>

show more ...


config/packages/mpi4py.py
895d7ce522-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jolivet/feature-bamg-hpddm-shared-libraries-0' into 'main'

configure: minor improvements for BAMG and HPDDM --with-shared-libraries=0

See merge request petsc/petsc!3744


config/packages/bamg.py
config/packages/hpddm.py
/petsc/config/examples/arch-ci-linux-xsdk-dbg.py
/petsc/src/ksp/ksp/impls/hpddm/makefile
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/tutorials/ex75.c
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex76f.F90
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/ksp/tutorials/ex77f.F90
/petsc/src/ksp/pc/impls/hpddm/makefile
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/snes/tutorials/ex12.c
/petsc/src/snes/tutorials/ex56.c
03cacdc922-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/pcmg-matapply' into 'main'

PCMG matapply

See merge request petsc/petsc!3717


config/packages/hpddm.py
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/pcmgimpl.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/src/docs/website/documentation/changes/314.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/tests/ex26.c
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex26_1.out
/petsc/src/ksp/ksp/tests/output/ex26_2.out
/petsc/src/ksp/ksp/tests/output/ex26_cycles_pc_mg_type-additive.out
/petsc/src/ksp/ksp/tests/output/ex26_cycles_pc_mg_type-full.out
/petsc/src/ksp/ksp/tests/output/ex26_cycles_pc_mg_type-kaskade.out
/petsc/src/ksp/ksp/tests/output/ex26_cycles_pc_mg_type-multiplicative.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_ilu_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_ilu_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-additive_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-additive_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-full_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-full_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-kaskade_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-kaskade_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-multiplicative_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_hpddm_mg_pc_mg_type-multiplicative_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-additive_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-additive_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-full_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-full_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-kaskade_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-kaskade_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-multiplicative_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_ml_pc_mg_type-multiplicative_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-additive_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-additive_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-full_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-full_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-kaskade_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-kaskade_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-multiplicative_ksp_matsolve_batch_size-4.out
/petsc/src/ksp/ksp/tests/output/ex26_matcycles_pc_mg_type-multiplicative_ksp_matsolve_batch_size-7.out
/petsc/src/ksp/ksp/tests/output/ex26_ml_1.out
/petsc/src/ksp/ksp/tests/output/ex26_ml_2.out
/petsc/src/ksp/ksp/tests/output/ex26_ml_3.out
/petsc/src/ksp/ksp/tests/output/ex28_2.out
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/ksp/tutorials/ex77f.F90
/petsc/src/ksp/ksp/tutorials/output/ex43_5.out
/petsc/src/ksp/ksp/tutorials/output/ex43_6.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaij.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpiaijcrl.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpiaijperm.out
/petsc/src/ksp/ksp/tutorials/output/ex72_mpicrl.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-2.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-2.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/mg/fmg.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/mg/smg.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/normal/normm.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex70.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
/petsc/src/snes/tutorials/output/ex19_10.out
/petsc/src/snes/tutorials/output/ex19_13.out
/petsc/src/snes/tutorials/output/ex19_7.out
/petsc/src/snes/tutorials/output/ex19_9.out
/petsc/src/snes/tutorials/output/ex19_bcgsl.out
/petsc/src/snes/tutorials/output/ex19_ibcgs.out
/petsc/src/snes/tutorials/output/ex19_mpibaijmkl.out
/petsc/src/snes/tutorials/output/ex19_ngmres_fas_ms.out
/petsc/src/snes/tutorials/output/ex19_tut_1.out
/petsc/src/snes/tutorials/output/ex48_4.out
/petsc/src/snes/tutorials/output/ex5_5.out
/petsc/src/snes/tutorials/output/ex63_quad_q2q1_full_P2.out
/petsc/src/snes/tutorials/output/ex63_quad_q2q1_full_P5.out
/petsc/src/tao/bound/tutorials/output/plate2_3.out
/petsc/src/tao/bound/tutorials/output/plate2_4.out
/petsc/src/tao/unconstrained/tutorials/output/minsurf2_2.out
/petsc/src/ts/tests/output/ex21_2_bdf_ngmres_fas_ms.out
/petsc/src/ts/tests/output/ex21_2_bdf_ngmres_fas_ngs.out
253dc68421-Mar-2021 Pierre Jolivet <pierre@joliv.et>

PCHPDDM: no compilation --with-shared-libraries=0


config/packages/hpddm.py
/petsc/src/ksp/ksp/impls/hpddm/makefile
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/tutorials/ex75.c
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex76f.F90
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/ksp/tutorials/ex77f.F90
/petsc/src/ksp/pc/impls/hpddm/makefile
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/snes/tutorials/ex12.c
/petsc/src/snes/tutorials/ex56.c
44ffa8be21-Mar-2021 Pierre Jolivet <pierre@joliv.et>

BAMG: warning with --with-shared-libraries=0


config/packages/bamg.py
57f10a5e17-Mar-2021 Junchao Zhang <jczhang@anl.gov>

config: kokkos-kernels use kokkos C++ settings


config/packages/kokkos-kernels.py
7f8853ee17-Mar-2021 Junchao Zhang <jczhang@anl.gov>

config: let kokkos manage its own C++ dialect based on compilers used


config/packages/kokkos.py
3036dd8918-Mar-2021 Junchao Zhang <jczhang@mcs.anl.gov>

config: modify the test to use the variable to suppress compilation warning


config/compilers.py
f9578e9517-Mar-2021 Junchao Zhang <jczhang@anl.gov>

config: let each compiler set its own C++ dialect

close #858


config/compilers.py
config/packages/cuda.py
/petsc/config/examples/arch-ci-linux-gcc-complex-opt-32bit.py
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/lib/petsc/conf/rules
/petsc/src/docs/website/documentation/changes/dev.html
95bab96a21-Mar-2021 Alexei Colin <acolin@isi.edu>

config: petsc4py: fix type of --with arg to bool

This fixes --with-petsc4py=0 being wrongly interpreted as true
(because "if '0':" would eval to true in package.py).

Signed-off-by: Alexei Colin <ac

config: petsc4py: fix type of --with arg to bool

This fixes --with-petsc4py=0 being wrongly interpreted as true
(because "if '0':" would eval to true in package.py).

Signed-off-by: Alexei Colin <acolin@isi.edu>

show more ...


config/packages/petsc4py.py
/petsc/config/examples/arch-ci-linux-gcc-complex-opt-32bit.py
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/lib/petsc/conf/rules
/petsc/src/docs/website/documentation/changes/dev.html
ee9d1c5e19-Mar-2021 Satish Balay <balay@mcs.anl.gov>

configure add option with-mpi-f90module-visibility


config/packages/MPI.py
/petsc/config/examples/arch-ci-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-linux-64idx-i8.py
/petsc/config/examples/arch-ci-linux-clang-avx.py
/petsc/config/examples/arch-ci-linux-cuda11-complex.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/config/examples/arch-ci-mswin-intel-cxx-cmplx.py
/petsc/config/examples/arch-ci-opensolaris-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-cxx-cmplx-pkgs-dbg.py
/petsc/include/petsc/finclude/petscsys.h
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/tutorials/ex44f.F90
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F90
/petsc/src/sys/logging/tutorials/ex1f.F90
/petsc/src/sys/tests/ex38f.F90
/petsc/src/sys/tutorials/ex16f.F90
/petsc/src/sys/tutorials/ex1f.F90
/petsc/src/sys/tutorials/ex2f.F90
/petsc/src/sys/tutorials/ex4f.F
/petsc/src/sys/tutorials/ex4f90.F90
/petsc/src/tao/leastsquares/tutorials/chwirut2f.h
/petsc/src/vec/is/sf/tutorials/ex1f.F90
/petsc/src/vec/vec/tests/ex32f.F
68bd534a19-Mar-2021 Satish Balay <balay@mcs.anl.gov>

mpi-f90: mpi.mod is now mandatory

fix mpi.mod check to work with -i8


config/packages/MPI.py
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/snes/tests/ex12f.F
/petsc/src/snes/tests/ex13.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/errabort.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/error/pstack.c
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F90
/petsc/src/sys/tutorials/ex4f.F
/petsc/src/sys/tutorials/ex4f90.F90
/petsc/src/tao/leastsquares/tutorials/chwirut2f.F90
/petsc/src/tao/leastsquares/tutorials/chwirut2f.h
/petsc/src/ts/tests/ex26.c
/petsc/src/vec/is/sf/makefile
/petsc/src/vec/is/sf/tutorials/makefile
/petsc/src/vec/vec/tests/ex32f.F
04ac29bc20-Mar-2021 Alexei Colin <acolin@isi.edu>

config: petsc4py: honor DESTDIR make var

Top-level makefile honors destination directory (which is a path where
files are to be staged, orthogonal to the prefix path). The destination
path is specif

config: petsc4py: honor DESTDIR make var

Top-level makefile honors destination directory (which is a path where
files are to be staged, orthogonal to the prefix path). The destination
path is specified via DESTDIR variable: `make DESTDIR=foo install`.

But, before this commit, the makefile target `petsc4py-install` did not
honor DESTDIR and ends up staging files into /, which created
counter-intuitive behavior that's hard to work around in packaging
scripts.

If DESTDIR is not set, then installation command is unchanged, exactly
as it was before this commit.

Signed-off-by: Alexei Colin <acolin@isi.edu>

show more ...


config/packages/petsc4py.py
a459f12320-Mar-2021 Alexei Colin <acolin@isi.edu>

config: petsc4py: remove code duplication in install path

Factor the path expression into installLibPath variable
and use that variable in all places.

Also, remove unused `pp` variable.

Signed-off

config: petsc4py: remove code duplication in install path

Factor the path expression into installLibPath variable
and use that variable in all places.

Also, remove unused `pp` variable.

Signed-off-by: Alexei Colin <acolin@isi.edu>

show more ...


config/packages/petsc4py.py
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/snes/tests/ex13.c
41599d4018-Mar-2021 Satish Balay <balay@mcs.anl.gov>

slepc: update to latest snapshot


config/packages/slepc.py
f8f3f9e118-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/fix-hipcc-typo' into 'main'

Fix a typo: hipc to hipcc

See merge request petsc/petsc!3731


config/setCompilers.py
626924cb18-Mar-2021 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


config/packages/PTScotch.py
/petsc/include/petscdm.h
/petsc/include/petscsf.h
/petsc/include/petscsnes.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/builddist
/petsc/lib/petsc/bin/maint/createpatch
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/lib/petsc/bin/maint/rebuildtar
/petsc/lib/petsc/bin/maint/xclude
/petsc/makefile
/petsc/src/dm/f90-mod/petscdm.h90
/petsc/src/dm/f90-mod/petscdmcomposite.h90
/petsc/src/dm/f90-mod/petscdmda.h90
/petsc/src/dm/f90-mod/petscdmdamod.F90
/petsc/src/dm/f90-mod/petscdmlabel.h90
/petsc/src/dm/f90-mod/petscdmmod.F90
/petsc/src/dm/f90-mod/petscdmplex.h90
/petsc/src/dm/f90-mod/petscdmplexmod.F90
/petsc/src/dm/f90-mod/petscdmswarm.h90
/petsc/src/dm/f90-mod/petscdt.h90
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/manualpages-sec/header_SF
/petsc/src/docs/sphinx_docs/ext/html5_petsc.py
/petsc/src/docs/sphinx_docs/guides/meshing/guide_to_subsurface.rst
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/f90-mod/petscksp.h90
/petsc/src/ksp/f90-mod/petsckspdefmod.F90
/petsc/src/ksp/f90-mod/petsckspmod.F90
/petsc/src/ksp/f90-mod/petscpc.h90
/petsc/src/ksp/f90-mod/petscpcmod.F90
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/tests/makefile
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/mat/f90-mod/petscmatmod.F90
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/snes/f90-mod/petscsnes.h90
/petsc/src/snes/f90-mod/petscsnesmod.F90
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/fas/fasimpls.h
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tests/ex2.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/ex63.c
/petsc/src/snes/tutorials/output/ex13_2d_p1_fas_full.out
/petsc/src/snes/tutorials/output/ex13_2d_p1_fas_full_homogeneous.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/f90-mod/petscsys.h90
/petsc/src/sys/f90-mod/petscsysmod.F90
/petsc/src/sys/f90-mod/petscviewer.h90
/petsc/src/sys/objects/optionsyaml.c
/petsc/src/sys/tests/ex47-multidoc.yaml
/petsc/src/sys/tests/ex47.c
/petsc/src/sys/tests/output/ex47_3_multidoc.out
/petsc/src/tao/f90-mod/petsctaomod.F90
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/f90-mod/petsctsmod.F90
/petsc/src/ts/impls/implicit/sundials/makefile
/petsc/src/ts/impls/implicit/sundials/sundials.h
/petsc/src/ts/interface/tsregall.c
/petsc/src/ts/tests/ex3.c
/petsc/src/ts/tutorials/ex20td.c
/petsc/src/ts/tutorials/ex4.c
/petsc/src/ts/tutorials/ex77.c
/petsc/src/ts/tutorials/makefile
/petsc/src/ts/tutorials/output/ex77_2d_tri_p2_p1_p1_exit.out
/petsc/src/ts/tutorials/power_grid/makefile
/petsc/src/vec/f90-mod/petscis.h90
/petsc/src/vec/f90-mod/petscvec.h90
/petsc/src/vec/f90-mod/petscvecmod.F90
/petsc/src/vec/is/sf/tests/ex16.c
/petsc/src/vec/is/sf/tests/makefile
/petsc/src/vec/is/sf/tests/output/ex16_0.out
/petsc/src/vec/is/sf/tests/output/ex16_1.out
/petsc/src/vec/is/sf/tests/output/ex16_2.out
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/vec/tests/makefile
7aed2c8f18-Mar-2021 Junchao Zhang <jczhang@anl.gov>

Fix a typo: hipc to hipcc


config/setCompilers.py
/petsc/include/petscdm.h
/petsc/include/petscsf.h
/petsc/include/petscsnes.h
/petsc/include/petscts.h
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/manualpages-sec/header_SF
/petsc/src/docs/sphinx_docs/ext/html5_petsc.py
/petsc/src/docs/sphinx_docs/guides/meshing/guide_to_subsurface.rst
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/tests/makefile
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/fas/fasimpls.h
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tests/ex2.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/ex63.c
/petsc/src/snes/tutorials/output/ex13_2d_p1_fas_full.out
/petsc/src/snes/tutorials/output/ex13_2d_p1_fas_full_homogeneous.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/objects/optionsyaml.c
/petsc/src/sys/tests/ex47-multidoc.yaml
/petsc/src/sys/tests/ex47.c
/petsc/src/sys/tests/output/ex47_3_multidoc.out
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/impls/implicit/sundials/makefile
/petsc/src/ts/impls/implicit/sundials/sundials.h
/petsc/src/ts/interface/tsregall.c
/petsc/src/ts/tests/ex3.c
/petsc/src/ts/tutorials/ex20td.c
/petsc/src/ts/tutorials/ex4.c
/petsc/src/ts/tutorials/ex77.c
/petsc/src/ts/tutorials/makefile
/petsc/src/ts/tutorials/output/ex77_2d_tri_p2_p1_p1_exit.out
/petsc/src/ts/tutorials/power_grid/makefile
/petsc/src/vec/is/sf/tests/ex16.c
/petsc/src/vec/is/sf/tests/makefile
/petsc/src/vec/is/sf/tests/output/ex16_0.out
/petsc/src/vec/is/sf/tests/output/ex16_1.out
/petsc/src/vec/is/sf/tests/output/ex16_2.out
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/vec/tests/makefile

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