| 5790ee6e | 20-Feb-2021 |
Barry Smith <bsmith@mcs.anl.gov> |
Missing space in SuiteSparse.py causes options to be incorrectly stuck together
-O-Wl,-rpath,/usr/local/opt/openblas/lib
Commit-type: bug-fix, configure
/spend 5m
Reported-by: Daniel Finn <dsfinn@b
Missing space in SuiteSparse.py causes options to be incorrectly stuck together
-O-Wl,-rpath,/usr/local/opt/openblas/lib
Commit-type: bug-fix, configure
/spend 5m
Reported-by: Daniel Finn <dsfinn@buffalo.edu>
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| fbfe4939 | 22-Jan-2021 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
retrieval.Retriever rewrite.
* add Retriever.isDirectoryGitRepo()
- use git rev-parse --resolve-git-dir
- use it to check whether dir is git repo
* separate retrieve implementations, genericRet
retrieval.Retriever rewrite.
* add Retriever.isDirectoryGitRepo()
- use git rev-parse --resolve-git-dir
- use it to check whether dir is git repo
* separate retrieve implementations, genericRetrieve() just dispatches
* use URL parser for protocol determination
* support ssh://*.git https://*.git
* if tarball exists locally, just copy it
* rename dir to d as dir() is Python built-in
* factor out repeated err message into getDownloadFailureMessage()
* factor out/unify logic for target file/dir removal
* better way to remove URL prefixes
* Url -> URL in messages
* raise error if self.sourceControl.hg or self.sourceControl.git is missing rather than just silently return
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| c4c85266 | 03-Feb-2021 |
Alexei Colin <acolin@isi.edu> |
config: mpi: increase timeout for mpiexec cmd
Build failure due to this timeout expiring has been observed on
Oak Ridge Summit:
TESTING: configureMPIEXEC from
config.packages.MPI(/autofs/nccs-svm
config: mpi: increase timeout for mpiexec cmd
Build failure due to this timeout expiring has been observed on
Oak Ridge Summit:
TESTING: configureMPIEXEC from
config.packages.MPI(/autofs/nccs-svm1_home1/prefix/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:175)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Timeout: Unable to run MPI program with mpiexec --oversubscribe -n 1
(1) make sure this is the correct program to run MPI jobs
(2) your network may be misconfigured; see
https://www.mcs.anl.gov/petsc/documentation/faq.html#PetscOptionsInsertFile
*******************************************************************************
OR
-------------------------------------------------------------------------------
Runaway process exceeded time limit
*******************************************************************************
config.log shows timeout of 60:
Running Executable with threads to time it out at 60
Executing: mpiexec --oversubscribe -n 1
/autofs/nccs-svm1_home1/acolin/prefix/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-kl1bcc0y/config.packages.MPI/conftest
Runaway process exceeded time limit of 60
ERROR while running executable: Could not execute "['mpiexec --oversubscribe -n 1
/autofs/nccs-svm1_home1/acolin/prefix/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-kl1bcc0y/config.packages.MPI/conftest']":
Runaway process exceeded time limit of 60
The test program actually consistently takes about 1 minute to complete:
$ time mpiexec --oversubscribe -n 1
/autofs/nccs-svm1_home1/acolin/prefix/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-25nqc3li/config.packages.MPI/conftest
--------------------------------------------------------------------------
WARNING: A deprecated command line option was used.
Deprecated option: --oversubscribe
Corrected option: --map-by :OVERSUBSCRIBE
We have updated this for you and will proceed. However, this will be
treated
as an error in a future release. Please update your command line.
--------------------------------------------------------------------------
******* Corrected cmd line: mpiexec --map-by :OVERSUBSCRIBE -n 1
/autofs/nccs-svm1_home1/acolin/prefix/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-25nqc3li/config.packages.MPI/conftest
[1612375572.677852] [login2:107008:0] ib_md.c:1699 UCX ERROR ibv_open_device(mlx5_2) failed: Operation not permitted
[1612375587.678517] [login2:107008:0] ib_md.c:1699 UCX ERROR ibv_open_device(mlx5_0) failed: Operation not permitted
[1612375602.679250] [login2:107008:0] ib_md.c:1699 UCX ERROR ibv_open_device(mlx5_3) failed: Operation not permitted
[1612375617.679927] [login2:107008:0] ib_md.c:1699 UCX ERROR ibv_open_device(mlx5_1) failed: Operation not permitted
real 1m1.208s
user 0m0.122s
sys 0m0.079s
Signed-off-by: Alexei Colin <acolin@isi.edu>
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