History log of /petsc/config/BuildSystem/ (Results 2376 – 2400 of 4739)
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276f8f1b23-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-12-01/nd-default-cholesky-icc-aij' into 'master'

Change the default behavior of PCCHOLESKY to use nested dissection...

See merge request petsc/petsc!2344


config/packages/hpddm.py
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petsc/private/petschpddm.h
/petsc/include/petscmat.h
/petsc/include/petscts.h
/petsc/src/dm/dt/fe/examples/tests/ex1.c
/petsc/src/dm/examples/tutorials/ex2.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/stag/examples/tests/ex4.c
/petsc/src/dm/impls/swarm/examples/tests/ex4.c
/petsc/src/dm/impls/swarm/examples/tests/ex5.c
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi1.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_euler.out
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/ksp/examples/tutorials/ex75f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex76.c
/petsc/src/ksp/ksp/examples/tutorials/ex76f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex9.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/order/sorder.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_spetsc.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/interface/snes.c
/petsc/src/tao/interface/fdiff.c
/petsc/src/ts/examples/tests/ex4.c
/petsc/src/ts/examples/tests/output/ex4_8.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
fae6464721-Dec-2019 Barry Smith <bsmith@mcs.anl.gov>

Update output files for new Cholesky ordering default

Reported-by: gitlab-ci


config/packages/hpddm.py
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petscmat.h
/petsc/src/dm/dt/fe/examples/tests/ex1.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/stag/examples/tests/ex4.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/mat/order/sorder.c
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_spetsc.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
cab5ea2518-Jan-2020 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

General PETSc fixes

* make generatefortranstubs.py handle .cxx
* bump HPDDM version + minor hypre cleaning


config/packages/hpddm.py
/petsc/include/petsc/finclude/petscksp.h
/petsc/include/petsc/finclude/petscpc.h
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/makefile
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
adde923f20-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


/petsc/.gitlab-ci.yml
config/libraries.py
config/package.py
config/packages/GLVis.py
config/packages/MPI.py
config/packages/MUMPS.py
config/packages/PTScotch.py
config/packages/Triangle.py
config/packages/Trilinos.py
config/packages/adblaslapack.py
config/packages/alquimia.py
config/packages/amanzi.py
config/packages/f2cblaslapack.py
config/packages/lgrind.py
config/packages/openblas.py
config/packages/pflotran.py
config/packages/python.py
config/packages/radau5.py
config/packages/scalapack.py
config/packages/tchem.py
config/packages/tetgen.py
config/packages/xSDKTrilinos.py
/petsc/config/examples/arch-ci-linux-intel-cmplx.py
/petsc/config/examples/arch-ci-linux-intel.py
/petsc/include/petscsys.h
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tests/ex49.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
0319534e16-Dec-2019 Satish Balay <balay@mcs.anl.gov>

configure: update to use minimum timeout=60 [lower timeout does not speed up configure - it just kills jobs on overloaded machines]


config/libraries.py
config/package.py
config/packages/GLVis.py
config/packages/MPI.py
config/packages/MUMPS.py
config/packages/PTScotch.py
config/packages/Triangle.py
config/packages/Trilinos.py
config/packages/adblaslapack.py
config/packages/alquimia.py
config/packages/amanzi.py
config/packages/f2cblaslapack.py
config/packages/lgrind.py
config/packages/openblas.py
config/packages/pflotran.py
config/packages/python.py
config/packages/radau5.py
config/packages/scalapack.py
config/packages/tchem.py
config/packages/tetgen.py
config/packages/xSDKTrilinos.py
/petsc/config/petsc_harness.sh
/petsc/src/contrib/fun3d/comp/flow.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/stag/examples/tests/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/ksp/examples/tutorials/ex76.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex21.c
/petsc/src/mat/examples/tests/ex75.c
/petsc/src/mat/impls/aij/seq/lusol/lusol.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/constrained/examples/tutorials/toy.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/pde_constrained/examples/tutorials/parabolic.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/is/ao/examples/tests/ex1.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
bdeec4f120-Jan-2020 prj- <pierre.jolivet@enseeiht.fr>

Update for latest Scalapack release must use PETSc pkg mirror for the parallel build

Otherwise the build is sequential and takes a very long time. Amazing 2020 and a famous package doesn't
have a pa

Update for latest Scalapack release must use PETSc pkg mirror for the parallel build

Otherwise the build is sequential and takes a very long time. Amazing 2020 and a famous package doesn't
have a parallel build.

Commit-type: optimization of build process

show more ...


config/packages/scalapack.py
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/ksp/examples/tests/ex22.c
/petsc/src/ksp/ksp/examples/tests/ex9.c
/petsc/src/mat/examples/tests/ex185.c
/petsc/src/mat/impls/cdiagonal/cdiagonal.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/nest/matnest.c
a624d0d820-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2020-01-13/with-xx-dir-check' into 'master'

Quick check of deps packages in framework.py should look for -dir and -lib also

See merge request petsc/petsc!2444


config/framework.py
/petsc/config/petsc_harness.sh
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/output/ex14_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_2d_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t_parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_13_hybs2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_distribute_overlap.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_overlapsf.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_s2t_bugfaces_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_part_parmetis_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/snes/examples/tutorials/output/ex12_bd_int_1.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p1_r2.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p1_r3.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p2_r2.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex69_1.out
/petsc/src/snes/examples/tutorials/output/ex69_2.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_olof.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q1p0ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q2q1ref.out
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
8ab57a7f17-Jan-2020 Jed Brown <jed@jedbrown.org>

zstd.py: real-time compression library


config/packages/zstd.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
2c8518b826-Dec-2019 Jed Brown <jed@jedbrown.org>

config libceed.py: update to modern conventions


config/packages/libceed.py
38dfeb1c26-Dec-2019 Jed Brown <jed@jedbrown.org>

config make.py: add make_jnp_list and make_sudo_list for convenience

Calling executeShellCommand with a string (to be parsed by the shell)
is an anti-pattern that causes no end of problems when path

config make.py: add make_jnp_list and make_sudo_list for convenience

Calling executeShellCommand with a string (to be parsed by the shell)
is an anti-pattern that causes no end of problems when paths have
spaces and the like. We should pass lists in new code (and legacy
code should eventually be migrated).

show more ...


config/packages/make.py
b02957d526-Dec-2019 Jed Brown <jed@jedbrown.org>

openblas.py: self.known64 is assumed to have value '64' or '32' in BlasLapack.py

so use the same convention here.


config/packages/openblas.py
e3ae31d426-Dec-2019 Jed Brown <jed@jedbrown.org>

BlasLapack.py: search BLIS before OpenBLAS before reference BLAS


config/packages/BlasLapack.py
48c6bfaf26-Dec-2019 Jed Brown <jed@jedbrown.org>

BlasLapack.py: replace "unknow" with "unknown"


config/packages/BlasLapack.py
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscfvimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/include/petscfv.h
/petsc/include/petscksp.h
/petsc/include/petscts.h
/petsc/src/dm/dt/dualspace/impls/bdm/dspacebdm.c
/petsc/src/dm/dt/examples/tests/ex5.c
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/composite/fecomposite.c
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/f90-custom/zdtdsf90.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex22.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex23_mf_0.out
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarmpic_plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petscapp.bib
/petsc/src/ksp/ksp/examples/tutorials/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_pipeprcg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_pipeprcg_rcw.out
/petsc/src/ksp/ksp/impls/cg/makefile
/petsc/src/ksp/ksp/impls/cg/pipeprcg/makefile
/petsc/src/ksp/ksp/impls/cg/pipeprcg/pipeprcg.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_2.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_3.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_4.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_5.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5_1.out
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
98b0e78c13-Jan-2020 Barry Smith <bsmith@mcs.anl.gov>

Quick check of deps packages in framework.py should look for -dir and -lib also

Commit-type: bug-fix, configure
Reported-by: Matthew Knepley <knepley@gmail.com>


config/framework.py
/petsc/src/dm/interface/dm.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
714d2f8d10-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-12-28/minor-config-fixes-openblas' into 'master'

Minor fixes for configure to debugability and OpenBLAS

See merge request petsc/petsc!2419


config/package.py
config/packages/openblas.py
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist0_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist0_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_seq_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_seq_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_simple_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_int_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_simple_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_int_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_simple_int.out
60a4e99f09-Jan-2020 Stefano Zampini <stefano.zampini@gmail.com>

Merge branch 'master' into 'stefanozampini/sfwin-reuse-win'

# Conflicts:
# config/BuildSystem/config/packages/MPI.py


config/base.py
config/framework.py
config/packages/MPI.py
config/packages/MUMPS.py
config/packages/PaStiX.py
config/packages/egads.py
config/packages/hpddm.py
config/packages/hwloc.py
config/packages/hypre.py
config/packages/metis.py
config/packages/ml.py
config/packages/openblas.py
config/setCompilers.py
script.py
/petsc/config/examples/arch-ci-linux-analyzer.py
/petsc/config/examples/arch-ci-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-ci-linux-pkgs-gcov.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petschpddm.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmstag.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/rebuildtar
/petsc/share/petsc/datafiles/meshes/unit_sphere.egadslite
/petsc/src/contrib/fun3d/comp/flow.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/examples/tests/ex37.c
/petsc/src/dm/impls/plex/examples/tests/output/ex37_sphere_0.out
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexegads.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/stag/examples/tests/ex30.c
/petsc/src/dm/impls/stag/examples/tests/ex4.c
/petsc/src/dm/impls/stag/examples/tests/output/ex30_1.out
/petsc/src/dm/impls/stag/examples/tests/output/ex30_2.out
/petsc/src/dm/impls/stag/examples/tutorials/output/ex3_2.out
/petsc/src/dm/impls/stag/stagstencil.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tests/output/ex51_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex51_2_alt_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/ksp/examples/tutorials/ex76.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_chebyest_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5_asm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5f_asm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/examples/tests/ex21.c
/petsc/src/mat/examples/tests/ex301.c
/petsc/src/mat/examples/tests/ex75.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_1.out
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_2.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_1.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_2.out
/petsc/src/mat/examples/tutorials/ex15.c
/petsc/src/mat/examples/tutorials/output/ex15_8.out
/petsc/src/mat/examples/tutorials/output/ex15_9.out
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/lusol/lusol.c
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/constrained/examples/tutorials/toy.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1_alt_2.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1_alt_2.out
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/pde_constrained/examples/tutorials/parabolic.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_5.out
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/vec/is/ao/examples/tests/ex1.c
/petsc/src/vec/is/examples/tests/ex3.c
/petsc/src/vec/is/examples/tests/output/ex3_1.out
/petsc/src/vec/is/examples/tests/output/ex3_2.out
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
47bf02ab08-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


config/packages/MPI.py
config/packages/hypre.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscdmstag.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/src/contrib/fun3d/comp/flow.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/stag/examples/tests/ex30.c
/petsc/src/dm/impls/stag/examples/tests/ex4.c
/petsc/src/dm/impls/stag/examples/tests/output/ex30_1.out
/petsc/src/dm/impls/stag/examples/tests/output/ex30_2.out
/petsc/src/dm/impls/stag/stagstencil.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/ksp/examples/tutorials/ex76.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/examples/tests/ex21.c
/petsc/src/mat/examples/tests/ex75.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/aij/seq/lusol/lusol.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/constrained/examples/tutorials/toy.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/pde_constrained/examples/tutorials/parabolic.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/vec/is/ao/examples/tests/ex1.c
6bb661e806-Jan-2020 Barry Smith <bsmith@mcs.anl.gov>

Apply suggestion to config/BuildSystem/config/package.py


config/package.py
58aabcb907-Nov-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

Handle -ksp_reuse_preconditioner


config/packages/hpddm.py
/petsc/include/petsc/private/petschpddm.h
/petsc/include/petscpc.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/rebuildtar
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
f4444a3c31-Dec-2019 Barry Smith <bsmith@mcs.anl.gov>

Fix hypre.py to handle MPI libraries that end with with .so and .dylib, forbid --with-mpi-include and --with-mpi-lib with MPI compilers

Commit-type: error-checking, bug-fix, portability-fix, configu

Fix hypre.py to handle MPI libraries that end with with .so and .dylib, forbid --with-mpi-include and --with-mpi-lib with MPI compilers

Commit-type: error-checking, bug-fix, portability-fix, configure
Reported-by: Victor Eijkhout <eijkhout@tacc.utexas.edu>

show more ...


config/packages/MPI.py
config/packages/hypre.py
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/rebuildtar
/petsc/src/docs/website/download/index.html
/petsc/src/mat/examples/tutorials/ex15.c
b6318a6b02-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


config/packages/MPI.py
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
f01efbf722-Dec-2019 Barry Smith <bsmith@mcs.anl.gov>

Use mpiexec to execute the MPI type run tests since for some MPI it won't work with just running the executable

Commit-type: portability-fix
Reported-by: Pierre JOLIVET <pierre.jolivet@enseeiht.fr>


config/packages/MPI.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/src/mat/examples/tests/ex301.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_1.out
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_2.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_1.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_2.out
/petsc/src/mat/examples/tutorials/ex15.c
/petsc/src/mat/examples/tutorials/output/ex15_8.out
/petsc/src/mat/examples/tutorials/output/ex15_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/vec/is/examples/tests/ex3.c
/petsc/src/vec/is/examples/tests/output/ex3_1.out
/petsc/src/vec/is/examples/tests/output/ex3_2.out
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
8435cd4c01-Jan-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-12-24/fix-configure-package-dependencies' into 'master'

Forgot that packages can be indicated with --with-xxx-lib

See merge request petsc/petsc!2416


config/framework.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/src/dm/impls/stag/examples/tutorials/output/ex3_2.out
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/output/ex51_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex51_2_alt_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_chebyest_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5_asm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5f_asm.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/mat/examples/tutorials/ex15.c
/petsc/src/mat/examples/tutorials/output/ex15_8.out
/petsc/src/mat/examples/tutorials/output/ex15_9.out
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1_alt_2.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1_alt_2.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1_alt_5.out
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
1a60757231-Dec-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-egads' into 'master'

Plex: Added support for the EGADS CAD package

See merge request petsc/petsc!2411


config/packages/egads.py
/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
/petsc/include/petscdmplex.h
/petsc/share/petsc/datafiles/meshes/unit_sphere.egadslite
/petsc/src/dm/impls/plex/examples/tests/ex37.c
/petsc/src/dm/impls/plex/examples/tests/output/ex37_sphere_0.out
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plexegads.c
/petsc/src/dm/impls/plex/plexrefine.c
1475a3bb31-Dec-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


config/packages/metis.py
/petsc/src/mat/examples/tests/ex301.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_1.out
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_2.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_1.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_2.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/snes/impls/tr/tr.c
/petsc/src/vec/is/examples/tests/ex3.c
/petsc/src/vec/is/examples/tests/output/ex3_1.out
/petsc/src/vec/is/examples/tests/output/ex3_2.out
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/vec/impls/mpi/pdvec.c

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