Merge branch 'barry/2019-12014/fix-fc-configure-packages' into 'master'

Update MUMPS.py to place fc in standard place. Removed unneeded fc initialization from ML.

See merge request petsc/petsc!2392

Merge branch 'barry/2019-12-11/barry-track-threads' into 'master'

Log use of threads and not threads when running configure executables

See merge request petsc/petsc!2378

Configure prints path information on failure to find executable to help debugability

Print "cannot be found" as possiblity when unable to get compiler working instead of incorrect: "doe not work"

H

Configure prints path information on failure to find executable to help debugability

Print "cannot be found" as possiblity when unable to get compiler working instead of incorrect: "doe not work"

Handle correctly --with-cc=mpicc so it does not try to find non-MPI c++ or fortran compilers

Commit-type: error-checking, portability-fix, configure

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Update to latest hwloc, and provide link to back up hwlock since the original website often fails.

Commit-type: portability-fix, testing-fix
Reported-by: gitlab-ci
Thanks-to: Satish Balay <balay@mcs

Update to latest hwloc, and provide link to back up hwlock since the original website often fails.

Commit-type: portability-fix, testing-fix
Reported-by: gitlab-ci
Thanks-to: Satish Balay <balay@mcs.anl.gov>

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Always reqire hwloc for pastix. Make pastix and openblas dependent on pthread

Commit-type: portability-fix
Reported-by: hg <hgbk2008@gmail.com>

Minor fixes for configure to debugability and OpenBLAS

Add optionalincludes for packages.py since useful for OpenBLAS (version checking). Now OpenBLAS can be used if the library but not the include

Minor fixes for configure to debugability and OpenBLAS

Add optionalincludes for packages.py since useful for OpenBLAS (version checking). Now OpenBLAS can be used if the library but not the include file is found

Fix checkversion so that it does not leave self.version from xxxx.py if unable to determine the version

Less confusing configure logging messages

Commit-type: configure, portability

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Add Metis version

Forgot that packages can be indicated with --with-xxx-lib

Commit-type: bug-fix
Reported-by: Pierre JOLIVET <pierre.jolivet@enseeiht.fr>

configure: added test for MPI_RGET

configure: MPI.py detect MS-MPI

HAVE_LIBMSMPI is executed in a different process and we cannot check for its presence when configuring MPI
Now we can properly flag broken tests

configure MPI: check for the presence of MPI_Get_accumulate

Log use of threads and not threads when running configure executables

Commit-type: configure
Reported-by: Frederic Vi <fvi@altair.com>
Thanks-to:
Development Tools: Vim, Emacs, Eclipse

Update MUMPS.py to place fc in standard place. Removed unneeded fc initialization from ML.

Commit-type: style-fix

Plex: Added support for the EGADS CAD package

For each package requested check if the dependency packages are requested or automatically handled; error with very useful message if not

Also checks if required compiler has been explicitly turned

For each package requested check if the dependency packages are requested or automatically handled; error with very useful message if not

Also checks if required compiler has been explicitly turned off

Currently the checks for if the package is requested or available are crude, may require further refinement

$ time ./configure --download-pragmatic
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Package pragmatic requested but dependency metis not requested. Perhaps you want --download-metis
Package pragmatic requested but dependency eigen not requested. Perhaps you want --download-eigen
*******************************************************************************
real 0m0.278s
user 0m0.205s
sys 0m0.070s

Commit-type: feature, configure
Reported-by: Jacob Faibussowitsch <jfaibussowitsch@anl.gov>
Reported-by: Jed Brown <jed@jedbrown.org>
Reported-by: Paul T. Bauman <ptbauman@gmail.com>

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Add comment that OpenBLAS is not always valgrind clean

Merge remote-tracking branch 'origin/maint'

petsc4py: set git commit

Set the version for petsc4py to a commit which updates
it for changes to the DMStag API, specifically renaming
DMStagGet1dCoordinateLocationSlot to
DMStagGetProductCoordinat

petsc4py: set git commit

Set the version for petsc4py to a commit which updates
it for changes to the DMStag API, specifically renaming
DMStagGet1dCoordinateLocationSlot to
DMStagGetProductCoordinateLocationSlot()

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metis: update to snapshot with fix for valgrind error on mat_tests-ex73_1

Update slepc.py to point to a version that fixes 'cxx' replacement

This is the analogue change in maint that was done for master in fb68c966

Update slepc.py to point to a version that fixes 'cxx' replacement

Fixes Issue #514

Merge remote-tracking branch 'origin/maint'

Merge branch 'jose/slepc-gitlab' into 'maint'

SLEPc moved to gitlab.com

See merge request petsc/petsc!2380

Merge remote-tracking branch 'origin/maint'

SLEPc moved to gitlab.com