History log of /petsc/config/BuildSystem/ (Results 2476 – 2500 of 4739)
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0e45ff8816-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'

f8c60a8516-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'balay/hypre-2.18.0/maint' into 'maint'

hypre: update to 2.18.1 - for xsdk-0.5.0

See merge request petsc/petsc!2128

7418543315-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'balay/fix-hypre-omp/maint' into 'maint'

openmp: always pass OpenMP compile flag to the linker [as its required at both...

See merge request petsc/petsc!2174

0e6427aa01-Oct-2019 Satish Balay <balay@mcs.anl.gov>

hypre: update to 2.18.1 - for xsdk-0.5.0
[retain compatibility with older hypre versions. 12.18.0 is skipped for mixedint build failure]


config/packages/hypre.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscsystypes.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/features/gpus.html
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijsolvnat4.c
/petsc/src/mat/impls/baij/seq/baijsolvnat6.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tests/ex241.cxx
/petsc/src/snes/examples/tests/makefile
/petsc/src/snes/examples/tests/output/ex241_1.out
/petsc/src/snes/examples/tutorials/ex5f90.F90
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/extchemfield.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex9.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/impls/explicit/rk/mrk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/comb.c
/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/vscatfce.c
78f6d0c414-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


config/packages/petsc4py.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdmplex.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tests/ex30.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexfvm.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/swarm/examples/tests/ex2.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/features/gpus.html
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/examples/tutorials/ex7.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/mat/examples/tests/ex163.c
/petsc/src/mat/examples/tests/ex195.c
/petsc/src/mat/examples/tests/ex202.c
/petsc/src/mat/examples/tests/ex221.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpimattransposematmult.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/mattransposematmult.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijsolvnat4.c
/petsc/src/mat/impls/baij/seq/baijsolvnat6.c
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/dense/seq/dense.h
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/impls/submat/submat.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tests/ex241.cxx
/petsc/src/snes/examples/tests/makefile
/petsc/src/snes/examples/tests/output/ex241_1.out
/petsc/src/snes/examples/tutorials/ex5f90.F90
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/extchemfield.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_0.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_1.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex9.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/impls/explicit/rk/mrk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/comb.c
/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/vscatfce.c
e02b9a9614-Oct-2019 Satish Balay <balay@mcs.anl.gov>

openmp: always pass OpenMP compile flag to the linker [as its required at both compile and link time]

This fixes a build error with --with-openmp --download-hypre

Reported-by: mphysx team <mphysxte

openmp: always pass OpenMP compile flag to the linker [as its required at both compile and link time]

This fixes a build error with --with-openmp --download-hypre

Reported-by: mphysx team <mphysxteam@gmail.com>

show more ...


config/packages/openmp.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscsystypes.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/features/gpus.html
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijsolvnat4.c
/petsc/src/mat/impls/baij/seq/baijsolvnat6.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tests/ex241.cxx
/petsc/src/snes/examples/tests/makefile
/petsc/src/snes/examples/tests/output/ex241_1.out
/petsc/src/snes/examples/tutorials/ex5f90.F90
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/extchemfield.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex9.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/impls/explicit/rk/mrk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/comb.c
/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/vscatfce.c
ca4f87c714-Oct-2019 Satish Balay <balay@mcs.anl.gov>

petsc4py: update to version 3.12.0


config/packages/petsc4py.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscsystypes.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/features/gpus.html
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijsolvnat4.c
/petsc/src/mat/impls/baij/seq/baijsolvnat6.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tests/ex241.cxx
/petsc/src/snes/examples/tests/makefile
/petsc/src/snes/examples/tests/output/ex241_1.out
/petsc/src/snes/examples/tutorials/ex5f90.F90
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/extchemfield.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex9.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/impls/explicit/rk/mrk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/comb.c
/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/vscatfce.c
a47d4ed404-Oct-2019 Barry Smith <bsmith@mcs.anl.gov>

Fixes and additions for OpenBLAS location

-with-'+self.package+'-pkg-config requires an existing directory so error if does not exist

Improve versionToStandardForm to handle .dev in version number

Fixes and additions for OpenBLAS location

-with-'+self.package+'-pkg-config requires an existing directory so error if does not exist

Improve versionToStandardForm to handle .dev in version number for OpenBLAS

Handle OpenBLAS libraries indicated by user and in default locations not just built by PETSc including support for -with-'+self.package+'-pkg-config

Commit-type: bug-fix, portability-fix
Reported-by: "Ofori-Opoku, Nana" <nana.ofori-opoku@cnl.ca>

Thanks-to:
Development Tools: Vim, Emacs, Eclipse

show more ...

78b8d9f003-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/base.py
config/packages/ADIOS.py
config/packages/MPI.py
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscerror.h
/petsc/include/petscsystypes.h
/petsc/lib/petsc/conf/rules
/petsc/src/contrib/fun3d/incomp/flow.c
/petsc/src/dm/examples/tutorials/output/ex20_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds.out
/petsc/src/dm/field/examples/tutorials/output/ex1_shell.out
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/daghost.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/output/ex14_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_2d_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t_parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_exodus_17_hyb3d_interp_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_fluent_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_fluent_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_fluent_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_13_hybs2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_17_hyb3d_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_17_hyb3d_interp_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_med_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_med_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_med_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_distribute_overlap.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_overlapsf.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_s2t_bugfaces_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_part_parmetis_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_13.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_14.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_18.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex27_quad_fm.out
/petsc/src/dm/impls/plex/examples/tests/output/ex27_quad_pm.out
/petsc/src/dm/impls/plex/examples/tests/output/ex27_tri_fm.out
/petsc/src/dm/impls/plex/examples/tests/output/ex27_tri_pm.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_3.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex1f90_1.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexorient.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/stag/stag1d.c
/petsc/src/dm/impls/stag/stag2d.c
/petsc/src/dm/impls/stag/stag3d.c
/petsc/src/dm/impls/stag/stagda.c
/petsc/src/dm/impls/stag/stagstencil.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex4_1.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex4_1_alt.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex4_2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex4_2_alt.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi1.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi1_alt.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_bsi2_alt.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_euler.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex5_euler_alt.out
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/examples/tutorials/ex1.c
/petsc/src/dm/label/examples/tutorials/output/ex1_0.out
/petsc/src/dm/label/examples/tutorials/output/ex1f90_0.out
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/snes/examples/tutorials/output/ex12_3d_p1_0.out
/petsc/src/snes/examples/tutorials/output/ex12_3d_p1_1.out
/petsc/src/snes/examples/tutorials/output/ex12_3d_p1_2.out
/petsc/src/snes/examples/tutorials/output/ex12_3d_p1_neumann_0.out
/petsc/src/snes/examples/tutorials/output/ex12_bd_int_0.out
/petsc/src/snes/examples/tutorials/output/ex12_bd_int_1.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_q1_adapt_0.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p1_r0.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p1_r2.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p1_r3.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p2_r0.out
/petsc/src/snes/examples/tutorials/output/ex12_tet_conv_p2_r2.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex69_0.out
/petsc/src/snes/examples/tutorials/output/ex69_1.out
/petsc/src/snes/examples/tutorials/output/ex69_2.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_olof.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q1p0.out
/petsc/src/snes/examples/tutorials/output/ex69_q1p0ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1ref.out
/petsc/src/snes/examples/tutorials/output/ex69_q2q1.out
/petsc/src/snes/examples/tutorials/output/ex69_q2q1ref.out
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/fp.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/ftn-custom/zutils.c
/petsc/src/sys/logging/utils/stagelog.c
/petsc/src/sys/mpiuni/mpitime.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_0.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_1.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/utils/comb.c
ecedc99e03-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-10-01/bugfix-batch-and-mpiexec' into 'maint'

Bug fix for when --with-batch and --with-mpiexec are passed to configure

See merge request petsc/petsc!2135

6ef0891f02-Oct-2019 Satish Balay <balay@mcs.anl.gov>

ADIOS: fix CI breakage with latest (ADIOS) master

Also fix dependency on -lm

ef73ed2c01-Oct-2019 Barry Smith <bsmith@mcs.anl.gov>

Bug fix for when --with-batch and --with-mpiexec are passed to configure

Clarify why executables cannot be run in output while using --with-batch

Commit-type: bug-fix, portability-fix, configure
Re

Bug fix for when --with-batch and --with-mpiexec are passed to configure

Clarify why executables cannot be run in output while using --with-batch

Commit-type: bug-fix, portability-fix, configure
Reported-by: Jacob Faibussowitsch <jfaibussowitsch@anl.gov>

show more ...

bdc41dbd01-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'

a7eba82301-Oct-2019 prj- <pierre.jolivet@enseeiht.fr>

No branch origin/featureChangedStructure

be8a535901-Oct-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'

0db0265f01-Oct-2019 Barry Smith <bsmith@mcs.anl.gov>

Add information about IBM Spectrum MPI and relationship to OpenMPI


config/packages/MPI.py
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/update-docs.py
/petsc/src/docs/tao_tex/manual/cover.tex
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/intro.tex
/petsc/src/docs/tex/manual/manual.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/310.html
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/35.html
/petsc/src/docs/website/documentation/changes/36.html
/petsc/src/docs/website/documentation/changes/37.html
/petsc/src/docs/website/documentation/changes/38.html
/petsc/src/docs/website/documentation/changes/39.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/index.html
44912b8430-Sep-2019 Satish Balay <balay@mcs.anl.gov>

slepc: update to use release v3.12 with petsc-3.12


config/packages/slepc.py
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/update-docs.py
/petsc/src/docs/tao_tex/manual/cover.tex
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/intro.tex
/petsc/src/docs/tex/manual/manual.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/310.html
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/35.html
/petsc/src/docs/website/documentation/changes/36.html
/petsc/src/docs/website/documentation/changes/37.html
/petsc/src/docs/website/documentation/changes/38.html
/petsc/src/docs/website/documentation/changes/39.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/index.html
b846b3f629-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'balay/fix_CUDAFLAGS_warning' into 'master'

configure: do not mix up CFLAGS vs CUDAFLAGS messages

See merge request petsc/petsc!2119

7853793d29-Sep-2019 Satish Balay <balay@mcs.anl.gov>

slepc, hpddm, petsc4py: update to use latest master for self.gitcommit [slepc, hpddm are tested with self.gitcommitmaster anyway]


config/packages/hpddm.py
config/packages/petsc4py.py
config/packages/slepc.py
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsccharacteristic.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/petscdiff
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/miscellaneous/funding.html
/petsc/src/ksp/f90-mod/petscpc.h
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_cusparse.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_4lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_dirichlet.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_lumped.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_lumped_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex2.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_bddc.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad_alt.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri_alt.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_alt.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/sys/objects/init.c
/petsc/src/vec/vec/interface/vector.c
1495af8e29-Sep-2019 Satish Balay <balay@mcs.anl.gov>

configure: do not mix up CFLAGS vs CUDAFLAGS messages

Reported-by: Jose E. Roman <jroman@dsic.upv.es>


config/compilerOptions.py
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsccharacteristic.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/petscdiff
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/miscellaneous/funding.html
/petsc/src/ksp/f90-mod/petscpc.h
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_cusparse.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_4lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_dirichlet.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_lumped.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_composite_bddc_lumped_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex2.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_bddc.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad_alt.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri_alt.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_alt.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/sys/objects/init.c
/petsc/src/vec/vec/interface/vector.c
f4d89b4028-Sep-2019 Satish Balay <balay@mcs.anl.gov>

valgrind: add back flag PETSC_HAVE_VALGRIND

Suggested-by: Stefano Zampini <stefano.zampini@gmail.com>
Suggested-by: Jed Brown <jed@jedbrown.org>

c1acdb0428-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/jczhang/feature-sf-on-gpu'

Add GPU-aware VecScatter/PetscSF

See merge request petsc/petsc!1995

50a85d3d28-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'balay/fix-mpiexec-shell-escape' into 'master'

mpiexec: shell escape should only be in make macros - not in python usage of mpiexec

See merge request petsc/petsc!2104


config/packages/MPI.py
/petsc/config/examples/arch-ci-linux-c-exodus-dbg.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/include/petsc/private/vecscatterimpl.h
/petsc/include/petscctable.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/linearsolvertable.html
/petsc/src/ksp/ksp/examples/tests/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/examples/tests/ex34.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex34.out
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpimattransposematmult.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_nc_singular_2d_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_singular_2d_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_singular_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
/petsc/src/sys/utils/mpitr.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/examples/tutorials/output/ex9_2.out
/petsc/src/vec/vec/impls/mpi/commonmpvec.c
/petsc/src/vec/vec/impls/node/vecnode.c
/petsc/src/vec/vec/impls/node/vecnodeimpl.h
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vscat/examples/ex1.c
/petsc/src/vec/vscat/examples/ex2.c
/petsc/src/vec/vscat/examples/ex3.c
/petsc/src/vec/vscat/examples/ex4.c
/petsc/src/vec/vscat/impls/mpi3/makefile
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscatfce.c
ea2c9d0c27-Sep-2019 Junchao Zhang <jczhang@mcs.anl.gov>

Add cuda-aware test for OpenMPI


config/packages/MPI.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/vecscatterimpl.h
/petsc/include/petscctable.h
/petsc/include/petsclog.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petscvec.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex56.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/sys/utils/sorti.c
/petsc/src/vec/is/sf/impls/basic/allgather/sfallgather.c
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.c
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h
/petsc/src/vec/is/sf/impls/basic/alltoall/sfalltoall.c
/petsc/src/vec/is/sf/impls/basic/cuda/makefile
/petsc/src/vec/is/sf/impls/basic/cuda/sfpackcuda.cu
/petsc/src/vec/is/sf/impls/basic/gather/sfgather.c
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.c
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.h
/petsc/src/vec/is/sf/impls/basic/makefile
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.h
/petsc/src/vec/is/sf/impls/basic/sfpack.c
/petsc/src/vec/is/sf/impls/basic/sfpack.h
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/sftype.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/examples/tutorials/output/ex9_2.out
/petsc/src/vec/vec/impls/mpi/commonmpvec.c
/petsc/src/vec/vec/impls/node/vecnode.c
/petsc/src/vec/vec/impls/node/vecnodeimpl.h
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vscat/examples/ex1.c
/petsc/src/vec/vscat/examples/ex2.c
/petsc/src/vec/vscat/examples/ex3.c
/petsc/src/vec/vscat/examples/ex4.c
/petsc/src/vec/vscat/examples/ex8.c
/petsc/src/vec/vscat/impls/mpi3/makefile
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscatfce.c
e49bf1e724-Sep-2019 Junchao Zhang <jczhang@mcs.anl.gov>

Revise MPI3 shared memory test and reinstate MPI2 MPI_Win_create test

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