History log of /petsc/config/BuildSystem/ (Results 2526 – 2550 of 4739)
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8b577e8219-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'stefanozampini/revert-for-glvis-parallel' into 'master'

revert check same comm on DMView

See merge request petsc/petsc!2039

ed0ed7c619-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'master' into 'barry/2019-08-22/fix-fblaslapack-for-nag'

# Conflicts:
# lib/petsc/conf/test


/petsc/.gitignore
/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
config/base.py
config/compile/Cxx.py
config/compile/FC.py
config/compilers.py
config/framework.py
config/package.py
config/packages/BlasLapack.py
config/packages/MFEM.py
config/packages/MPI.py
config/packages/PTScotch.py
config/packages/Trilinos.py
config/packages/hdf5.py
config/packages/hypre.py
config/packages/mkl_cpardiso.py
config/packages/mkl_pardiso.py
config/packages/sowing.py
config/setCompilers.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdt.h
/petsc/include/petscerror.h
/petsc/include/petscfetypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscpc.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/test
/petsc/src/dm/dt/dualspace/impls/bdm/makefile
/petsc/src/dm/dt/dualspace/impls/lagrange/makefile
/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
/petsc/src/dm/dt/dualspace/impls/simple/makefile
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/dualspace/interface/makefile
/petsc/src/dm/dt/dualspace/makefile
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/basic/makefile
/petsc/src/dm/dt/fe/impls/composite/fecomposite.c
/petsc/src/dm/dt/fe/impls/composite/makefile
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/dt/fe/impls/opencl/makefile
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/fe/interface/fegeom.c
/petsc/src/dm/dt/fe/interface/makefile
/petsc/src/dm/dt/fe/makefile
/petsc/src/dm/dt/fv/makefile
/petsc/src/dm/dt/space/impls/point/makefile
/petsc/src/dm/dt/space/impls/point/spacepoint.c
/petsc/src/dm/dt/space/impls/poly/makefile
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/subspace/makefile
/petsc/src/dm/dt/space/impls/tensor/makefile
/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/makefile
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/dt/space/makefile
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_16.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/manualpages-sec/header_DMPATCH
/petsc/src/docs/manualpages-sec/header_DMPLEX
/petsc/src/docs/manualpages-sec/header_DUALSPACE
/petsc/src/docs/manualpages-sec/header_FE
/petsc/src/docs/manualpages-sec/header_FV
/petsc/src/docs/manualpages-sec/header_SPACE
/petsc/src/docs/tex/manual/manual.tex
/petsc/src/docs/tex/manual/manualpreamble.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/developers/index.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
/petsc/src/docs/website/documentation/linearsolvertable.html
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex5.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex52f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex5f.F90
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_component.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex52_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex52f_1.out
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hmg/hmg.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex134.c
/petsc/src/mat/examples/tests/ex198.c
/petsc/src/mat/examples/tests/ex240.c
/petsc/src/mat/examples/tests/output/ex240_1.out
/petsc/src/mat/examples/tests/output/ex240_2.out
/petsc/src/mat/examples/tutorials/ex10.c
/petsc/src/mat/examples/tutorials/ex3.c
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/baij/mpi/mmbaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijfact81.c
/petsc/src/mat/impls/kaij/kaij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/snes/examples/tests/ex1.c
/petsc/src/snes/examples/tests/ex1f.F90
/petsc/src/snes/examples/tests/output/ex1f_4.out
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/output/ex19_cpardiso.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex56_1.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc_elast.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp_elast.out
/petsc/src/snes/examples/tutorials/output/ex56_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_ml.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/impls/gs/gssecant.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/impls/tr/trimpl.h
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/examples/tests/ex25.c
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/sys/examples/tests/output/ex25_1.out
/petsc/src/sys/memory/ftn-custom/zmtrf.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mhbw.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/state.c
/petsc/src/tao/bound/examples/tutorials/output/plate2f_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_1_alt.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_2_alt.out
/petsc/src/tao/bound/examples/tutorials/plate2f.F90
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5adj_2.out
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/multirate/ex5.c
/petsc/src/ts/examples/tutorials/output/ex20opt_p_2.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/sf/examples/tests/ex4.c
/petsc/src/vec/is/sf/examples/tests/output/ex4_1.out
/petsc/src/vec/is/sf/examples/tests/output/ex4_2.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_1.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_1_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_2.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_2_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_3.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_3_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4_stride.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5_stride.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_6_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_7.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_7_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_8.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_8_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_9_char.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_bcastop_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1f_1.out
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/output/ex49_1.out
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/utils/tagger/impls/cdf.c
/petsc/src/vec/vec/utils/vsection.c
d30a60da10-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Update OpenBLAS version, fix OpenBLAS make argument

Commit-type: portability-fix

35eec3da17-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/fix-cray-hypre-mfem-ldflags' into 'master'

configure: fix HYPRE and MFEM builds on Cray

See merge request petsc/petsc!2055


/petsc/.gitlab/CODEOWNERS
config/packages/MFEM.py
config/packages/hypre.py
/petsc/include/petscdt.h
/petsc/include/petscerror.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/src/dm/dt/fv/makefile
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/docs/manualpages-sec/header_DMPLEX
/petsc/src/docs/tex/manual/manual.tex
/petsc/src/docs/tex/manual/manualpreamble.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex56_1.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc_elast.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp_elast.out
/petsc/src/snes/examples/tutorials/output/ex56_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_ml.out
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/memory/ftn-custom/zmtrf.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mhbw.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5adj_2.out
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/output/ex20opt_p_2.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/vec/vec/utils/tagger/impls/cdf.c
4ca01a6a16-Sep-2019 Satish Balay <balay@mcs.anl.gov>

configure: correctly detect and set FPP

And use CXXPPFLAGS,FPPFLAGS correctly for MPI tests.

Update a test to use --with-mpi-include/--with-mpi-lib notation

This fixes:

./config/examples/arch-ci-

configure: correctly detect and set FPP

And use CXXPPFLAGS,FPPFLAGS correctly for MPI tests.

Update a test to use --with-mpi-include/--with-mpi-lib notation

This fixes:

./config/examples/arch-ci-mswin-opt-impi.py
./configure CC=gcc CXX=g++ FC=gfortran --with-mpi-include=/home/balay/soft/mpich-3.3/include --with-mpi-lib="-L/home/balay/soft/mpich-3.3/lib -lmpifort -lmpi"

show more ...


config/packages/MPI.py
config/setCompilers.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/sys/error/err.c
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_1.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_1_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_2.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_2_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_3.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_3_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_4_stride.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_5_stride.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_6_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_7.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_7_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_8.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_8_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_9_char.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_bcastop_basic.out
/petsc/src/vec/is/sf/examples/tutorials/output/ex1f_1.out
/petsc/src/vec/vec/examples/tests/output/ex49_1.out
00ebd40816-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Use package utility method to remove configure arg that needs to be replaced

9a7e760a16-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'jolivet/fix-config-package' into 'master'

Small fix to package.py when using a Git commit

See merge request petsc/petsc!2050

7afb25bd16-Sep-2019 stefano_zampini <stefano.zampini@gmail.com>

configure: fix HYPRE and MFEM builds on Cray

When using shared libraries, PETSc needs ldflags=-dynamic to be configure properly
HYPRE and MFEM put the -dynamic flag at the end of the linking line

$

configure: fix HYPRE and MFEM builds on Cray

When using shared libraries, PETSc needs ldflags=-dynamic to be configure properly
HYPRE and MFEM put the -dynamic flag at the end of the linking line

$ cc -shared -o library.so ...a bunch of .o files.... ...libraries.... -dynamic

The -dynamic at the end makes cc think it is creating an executable

show more ...

4edb1b2a16-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/2019-08-21/updates-pardiso' into 'master'

Add some additional error checking for MKL_Pardiso and MKL_CPardiso and turn...

See merge request petsc/petsc!2013

3574626915-Sep-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

Fixing gitcommit into commit.

1690674414-Aug-2019 Satish Balay <balay@mcs.anl.gov>

configure: update help string for CPPFLAGS

Suggested-by: "Smith, Barry F." <bsmith@mcs.anl.gov>

7821844d14-Aug-2019 Satish Balay <balay@mcs.anl.gov>

CXXCPP/FLAGS -> CXXPP/FLAGS

f257b9d012-Aug-2019 Satish Balay <balay@mcs.anl.gov>

configure: add FPPFLAGS [and not use CPPFLAGS with FC or CXX]

94ed8b6813-Sep-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

Updated packages.

af13c2f112-Sep-2019 Stefano Zampini <stefano.zampini@gmail.com>

minor


/petsc/.gitlab/CODEOWNERS
config/packages/MFEM.py
/petsc/include/petscmath.h
/petsc/include/petscsnes.h
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/snes/examples/tests/ex1.c
/petsc/src/snes/examples/tests/ex1f.F90
/petsc/src/snes/examples/tests/output/ex1f_4.out
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_ml.out
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/impls/tr/trimpl.h
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/sys/examples/tests/ex25.c
/petsc/src/sys/examples/tests/output/ex25_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
7065f1e012-Sep-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

No such thing as fcblaslapack.


/petsc/.gitlab/CODEOWNERS
config/packages/BlasLapack.py
/petsc/include/petscmath.h
/petsc/include/petscsnes.h
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/snes/examples/tests/ex1.c
/petsc/src/snes/examples/tests/ex1f.F90
/petsc/src/snes/examples/tests/output/ex1f_4.out
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_ml.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_gamg.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_ml.out
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/impls/tr/trimpl.h
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/sys/examples/tests/ex25.c
/petsc/src/sys/examples/tests/output/ex25_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
91c7983711-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-09-07/hdf5-know-zlib-szlib' into 'master'

Determine if HDF5 supports zlib and szlib

See merge request petsc/petsc!2021


/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
config/framework.py
config/packages/hdf5.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscfetypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/src/dm/dt/dualspace/impls/bdm/makefile
/petsc/src/dm/dt/dualspace/impls/lagrange/makefile
/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
/petsc/src/dm/dt/dualspace/impls/simple/makefile
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/dualspace/interface/makefile
/petsc/src/dm/dt/dualspace/makefile
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/basic/makefile
/petsc/src/dm/dt/fe/impls/composite/fecomposite.c
/petsc/src/dm/dt/fe/impls/composite/makefile
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/dt/fe/impls/opencl/makefile
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/fe/interface/fegeom.c
/petsc/src/dm/dt/fe/interface/makefile
/petsc/src/dm/dt/fe/makefile
/petsc/src/dm/dt/space/impls/point/makefile
/petsc/src/dm/dt/space/impls/point/spacepoint.c
/petsc/src/dm/dt/space/impls/poly/makefile
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/subspace/makefile
/petsc/src/dm/dt/space/impls/tensor/makefile
/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/makefile
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/dt/space/makefile
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/docs/manualpages-sec/header_DMPATCH
/petsc/src/docs/manualpages-sec/header_DUALSPACE
/petsc/src/docs/manualpages-sec/header_FE
/petsc/src/docs/manualpages-sec/header_FV
/petsc/src/docs/manualpages-sec/header_SPACE
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex5.c
/petsc/src/ksp/ksp/examples/tutorials/ex5f.F90
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_component.out
/petsc/src/ksp/pc/impls/hmg/hmg.c
/petsc/src/mat/examples/tests/ex134.c
/petsc/src/mat/examples/tests/ex240.c
/petsc/src/mat/examples/tests/output/ex240_1.out
/petsc/src/mat/examples/tests/output/ex240_2.out
/petsc/src/mat/examples/tutorials/ex10.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/sys/objects/state.c
/petsc/src/tao/bound/examples/tutorials/output/plate2f_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_1_alt.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2f_2_alt.out
/petsc/src/tao/bound/examples/tutorials/plate2f.F90
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/utils/vsection.c
7aea6a2110-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Remove stray space from library name, remove filtering from test makefile for LDFLAGS since it cannot handle blanks in directory names (Windows)

Commit-type: bug-fix, portability-fix
Reported-by: Mo

Remove stray space from library name, remove filtering from test makefile for LDFLAGS since it cannot handle blanks in directory names (Windows)

Commit-type: bug-fix, portability-fix
Reported-by: Mohammad Asghar <mohammad.asghar@lusas.com>

show more ...

75d383a210-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Check for inconsistent size of BLAS int and PETSc int for (C)Pardiso only when neccessary

Commit-type: bug-fix, portability-fix
Reported-by: gitlab-ci

89b6ec1b10-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

MPICH.py Don't check for Fortran nag compiler if there is no Fortran compiler

Commit-type: bug-fix, portability-fix
Reported-by: gitlab-ci

f2a1b1ab09-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Add support for finding MKL Pardiso libraries on Microsoft Windows, added ls to help debug if the configure fails checking for BLAS/LAPACK

Commit-type: portability-fix
Reported-by: Mohammad Asghar <

Add support for finding MKL Pardiso libraries on Microsoft Windows, added ls to help debug if the configure fails checking for BLAS/LAPACK

Commit-type: portability-fix
Reported-by: Mohammad Asghar <mohammad.asghar@lusas.com>

show more ...

38b2641509-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Addition versions of Intel MKL libraries for other MPI systems, OpenMPI and SGI

Commit-type: portability-fix, feature
Reported-by: Pierre Jolivet <Pierre.Jolivet@enseeiht.fr>

effebcaf08-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Docs only, Fix spelling of therefor

Commit-type: style-fix
Reported-by: Pierre Jolivet <Pierre.Jolivet@enseeiht.fr>


/petsc/.gitlab/CODEOWNERS
config/compilers.py
config/packages/BlasLapack.py
config/packages/Trilinos.py
/petsc/include/petscfvtypes.h
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/fv/interface/makefile
/petsc/src/dm/dt/fv/makefile
/petsc/src/dm/dt/interface/makefile
/petsc/src/dm/dt/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex52f.F90
/petsc/src/ksp/ksp/examples/tutorials/output/ex52_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex52f_1.out
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex198.c
/petsc/src/mat/examples/tutorials/ex3.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/multirate/ex5.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/examples/tests/ex4.c
/petsc/src/vec/is/sf/examples/tests/output/ex4_1.out
/petsc/src/vec/is/sf/examples/tests/output/ex4_2.out
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
4091c95c08-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Determine if HDF5 supports zlib and szlib

Use the flag to set requires: for some HDF5 test cases

Commit-type: feature

Reported-by: Hapla Vaclav <vaclav.hapla@erdw.ethz.ch>


/petsc/.gitlab/CODEOWNERS
config/framework.py
config/packages/hdf5.py
/petsc/include/petscfvtypes.h
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/fv/interface/makefile
/petsc/src/dm/dt/fv/makefile
/petsc/src/dm/dt/interface/makefile
/petsc/src/dm/dt/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex52f.F90
/petsc/src/ksp/ksp/examples/tutorials/output/ex52_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex52f_1.out
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex198.c
/petsc/src/mat/examples/tutorials/ex10.c
/petsc/src/mat/examples/tutorials/ex3.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/multirate/ex5.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/examples/tests/ex4.c
/petsc/src/vec/is/sf/examples/tests/output/ex4_1.out
/petsc/src/vec/is/sf/examples/tests/output/ex4_2.out
/petsc/src/vec/is/sf/interface/sf.c
366b760c21-Aug-2019 Barry Smith <bsmith@mcs.anl.gov>

Add some additional error checking for MKL_Pardiso and MKL_CPardiso and turn them on for 64 bit BLAS/LAPACK usage

Add test for cpardiso
Automatically try needed MPI libraries for cpardiso

Commit-ty

Add some additional error checking for MKL_Pardiso and MKL_CPardiso and turn them on for 64 bit BLAS/LAPACK usage

Add test for cpardiso
Automatically try needed MPI libraries for cpardiso

Commit-type: error-checking, feature
Reported-by: Mohammad Asghar <mohammad.asghar@lusas.com>

show more ...


config/packages/BlasLapack.py
config/packages/mkl_cpardiso.py
config/packages/mkl_pardiso.py
/petsc/include/petscfvtypes.h
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/fv/interface/makefile
/petsc/src/dm/dt/fv/makefile
/petsc/src/dm/dt/interface/makefile
/petsc/src/dm/dt/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex52f.F90
/petsc/src/ksp/ksp/examples/tutorials/output/ex52_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex52f_1.out
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex198.c
/petsc/src/mat/examples/tutorials/ex3.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/output/ex19_cpardiso.out
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/multirate/ex5.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/examples/tests/ex4.c
/petsc/src/vec/is/sf/examples/tests/output/ex4_1.out
/petsc/src/vec/is/sf/examples/tests/output/ex4_2.out
/petsc/src/vec/is/sf/interface/sf.c

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