History log of /petsc/config/BuildSystem/ (Results 2676 – 2700 of 4739)
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3341257a07-Jun-2019 Satish Balay <balay@mcs.anl.gov>

Merged in balay/check-incompatible-mpi-in-build-dir (pull request #1756)

configure: check for presence of incompatible MPI in build-dir

Approved-by: Karl Rupp <me@karlrupp.net>

bb9ee1db06-Jun-2019 Satish Balay <balay@mcs.anl.gov>

configure: when gitcommit is not found in the local clone it could also be due to repo URL change. So update error message.

Reported-by: Stefano Zampini <stefano.zampini@gmail.com>

5afeb25d06-Jun-2019 Satish Balay <balay@mcs.anl.gov>

configure: do not save '--force' option in reconfigure script

Reported-by: "Smith, Barry F." <bsmith@mcs.anl.gov>

683fa12106-Jun-2019 Satish Balay <balay@mcs.anl.gov>

configure: fix 'git stash' usage - to work even when ~/.gitconfig is not setup [otherwise it errors out with old versions of git]

Reported-by: Mouralidaran Arrutselvi <arrut.m@gmail.com>

4a6dc77705-Jun-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'

33e47c0e05-Jun-2019 BarryFSmith <bsmith@mcs.anl.gov>

Merged in barry/robustify-version-checks (pull request #1736)

Make version checking of packages more robust; support -patch<n> in HDF5 versions

Approved-by: Karl Rupp <me@karlrupp.net>

95fbbf0a04-Jun-2019 Satish Balay <balay@mcs.anl.gov>

avoid listing 0s in minversion. This fixes errors of type:

mpi version is 2
this version of PETSc needs at least 2.0

1a8e9eae04-Jun-2019 Satish Balay <balay@mcs.anl.gov>

fix --download-slepc --prefix=/patch PETSC_ARCH=arch-test

Reported-by: Pierre Jolivet <pierre.jolivet@enseeiht.fr>

fix --with-scalar-type=complex build

aed2ffa105-Jun-2019 Satish Balay <balay@mcs.anl.gov>

configure: check for presence of incompatible MPI in build-dir


config/packages/MPI.py
/petsc/config/configure.py
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petscerror.h
/petsc/include/petscmat.h
/petsc/include/petscoptions.h
/petsc/include/petscsys.h
/petsc/include/petscvec.h
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/dagtona.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/daltol.c
/petsc/src/dm/impls/da/dapf.c
/petsc/src/dm/impls/da/dascatter.c
/petsc/src/dm/impls/da/dasub.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/network/networkmonitor.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarmpic.c
/petsc/src/dm/impls/swarm/swarmpic_view.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/ksp/guess/impls/fischer/fischer.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cgtype.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/borthog.c
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmpre.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/python/pythonksp.c
/petsc/src/ksp/ksp/impls/qcg/qcg.c
/petsc/src/ksp/ksp/impls/rich/richscale.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/ksp/ksp/interface/saws/kspsaws.c
/petsc/src/ksp/ksp/interface/xmon.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/sr1/sr1.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbadbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/ksp/utils/schurm/schurm.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/aijmkl/mpiaijmkl.c
/petsc/src/mat/impls/aij/mpi/aijperm/mpiaijperm.c
/petsc/src/mat/impls/aij/mpi/aijsell/mpiaijsell.c
/petsc/src/mat/impls/aij/mpi/crl/mcrl.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
/petsc/src/mat/impls/aij/seq/aijsell/aijsell.c
/petsc/src/mat/impls/aij/seq/crl/crl.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/cdiagonal/cdiagonal.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/cufft/cufft.cu
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/scatter/mscatter.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex5.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/utils/convest.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/draw/impls/image/drawimage.c
/petsc/src/sys/classes/draw/impls/x/drawopenx.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/ams/ams.c
/petsc/src/sys/classes/viewer/impls/ams/amsopen.c
/petsc/src/sys/classes/viewer/impls/ascii/vcreatea.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/draw/drawv.c
/petsc/src/sys/classes/viewer/impls/glvis/glvis.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/classes/viewer/interface/viewers.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/dll/dl.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/fileio/ftest.c
/petsc/src/sys/fileio/mpiuopen.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/fileio/smatlab.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/subcomm.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/mpiu.c
/petsc/src/sys/utils/pdisplay.c
/petsc/src/sys/utils/psplit.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/sys/yaml/yamlimpls.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/vec/is/ao/impls/basic/aobasic.c
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/vmpicr.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/vseqcr.c
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/veccreate.c
/petsc/src/vec/vscat/interface/vscatfce.c
ea7278ae04-Jun-2019 Satish Balay <balay@mcs.anl.gov>

configure: add gitcommitmaster so that petsc/master [or related branches] can default to slepc/master

Also fix self.version string for petsc-dev [use for ex: 3.11.99]

Reported-by: Pierre Jolivet vi

configure: add gitcommitmaster so that petsc/master [or related branches] can default to slepc/master

Also fix self.version string for petsc-dev [use for ex: 3.11.99]

Reported-by: Pierre Jolivet via petsc-maint <petsc-maint@mcs.anl.gov>

show more ...


config/package.py
config/packages/slepc.py
/petsc/config/PETSc/options/petscdir.py
/petsc/config/configure.py
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petscerror.h
/petsc/include/petscmat.h
/petsc/include/petscoptions.h
/petsc/include/petscsys.h
/petsc/include/petscvec.h
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/dagtona.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/daltol.c
/petsc/src/dm/impls/da/dapf.c
/petsc/src/dm/impls/da/dascatter.c
/petsc/src/dm/impls/da/dasub.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/network/networkmonitor.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarmpic.c
/petsc/src/dm/impls/swarm/swarmpic_view.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/ksp/guess/impls/fischer/fischer.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cgtype.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/borthog.c
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmpre.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/python/pythonksp.c
/petsc/src/ksp/ksp/impls/qcg/qcg.c
/petsc/src/ksp/ksp/impls/rich/richscale.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/ksp/ksp/interface/saws/kspsaws.c
/petsc/src/ksp/ksp/interface/xmon.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/sr1/sr1.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbadbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/ksp/utils/schurm/schurm.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/aijmkl/mpiaijmkl.c
/petsc/src/mat/impls/aij/mpi/aijperm/mpiaijperm.c
/petsc/src/mat/impls/aij/mpi/aijsell/mpiaijsell.c
/petsc/src/mat/impls/aij/mpi/crl/mcrl.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
/petsc/src/mat/impls/aij/seq/aijsell/aijsell.c
/petsc/src/mat/impls/aij/seq/crl/crl.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/cdiagonal/cdiagonal.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/cufft/cufft.cu
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/scatter/mscatter.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex5.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/utils/convest.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/draw/impls/image/drawimage.c
/petsc/src/sys/classes/draw/impls/x/drawopenx.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/ams/ams.c
/petsc/src/sys/classes/viewer/impls/ams/amsopen.c
/petsc/src/sys/classes/viewer/impls/ascii/vcreatea.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/draw/drawv.c
/petsc/src/sys/classes/viewer/impls/glvis/glvis.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/classes/viewer/interface/viewers.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/dll/dl.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/fileio/ftest.c
/petsc/src/sys/fileio/mpiuopen.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/fileio/smatlab.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/subcomm.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/mpiu.c
/petsc/src/sys/utils/pdisplay.c
/petsc/src/sys/utils/psplit.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/sys/yaml/yamlimpls.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/vec/is/ao/impls/basic/aobasic.c
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/vmpicr.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/vseqcr.c
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/veccreate.c
/petsc/src/vec/vscat/interface/vscatfce.c
a38072e831-May-2019 Barry Smith <bsmith@mcs.anl.gov>

Make version checking of packages more robust; support -patch<n> in HDF5 versions

Remove requirments that all version information be given with the same number of . since
Python tuble comparison han

Make version checking of packages more robust; support -patch<n> in HDF5 versions

Remove requirments that all version information be given with the same number of . since
Python tuble comparison handles various cases correctly

Commit-type: bug-fix, portability-fix, feature
Reported-by: Dylan P. Brennan <dylanb@princeton.edu>
Thanks-to: Satish Balay <balay@mcs.anl.gov>

show more ...

b923ff0c02-Jun-2019 Stefano Zampini <stefano.zampini@gmail.com>

Merged in stefano_zampini/update-hypre (pull request #1696)

Update HYPRE to 2.16.0

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>


config/framework.py
config/package.py
config/packages/MFEM.py
config/packages/hypre.py
config/packages/tetgen.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-64idx.py
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petschypre.h
/petsc/include/petscfe.h
/petsc/include/petscsnes.h
/petsc/makefile
/petsc/src/dm/dt/dualspace/impls/bdm/dspacebdm.c
/petsc/src/dm/dt/dualspace/impls/bdm/makefile
/petsc/src/dm/dt/dualspace/impls/makefile
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/fe/interface/fegeom.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1_2d_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_bdm1q_2d_2.out
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmi.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex55.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex225.c
/petsc/src/mat/examples/tests/ex93.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex24.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_0.out
/petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_1.out
/petsc/src/snes/examples/tutorials/output/ex24_2d_bdm1_p0_2.out
/petsc/src/snes/examples/tutorials/output/ex24_2d_bdmq1_p0_0.out
/petsc/src/snes/examples/tutorials/output/ex24_2d_bdmq1_p0_2.out
/petsc/src/snes/interface/snes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/tao/examples/tutorials/output/ex1_1.out
/petsc/src/tao/examples/tutorials/output/ex2_2.out
/petsc/src/vec/vec/impls/hypre/vhyp.c
/petsc/src/vec/vec/impls/hypre/vhyp.h
7d99233b01-May-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

New hypre repository, latest TetGen version.

8efe913227-May-2019 Stefano Zampini <stefano.zampini@gmail.com>

Update MFEM to release v4.0

disable version check for MFEM since mfem/config.hpp is not available at configure time

39accc2526-May-2019 Stefano Zampini <stefano.zampini@gmail.com>

HYPRE: support when hypre is compiled with --enable-complex

Some of the operations are buggy in HYPRE (i.e. RAP, MatMatMults).
At least, now we compile against a complex hypre
Disable some hypre tes

HYPRE: support when hypre is compiled with --enable-complex

Some of the operations are buggy in HYPRE (i.e. RAP, MatMatMults).
At least, now we compile against a complex hypre
Disable some hypre tests in complex numbers and add a couple of configurations for the nightlies
Also, disabled MatGetRow tests because the previous test was buggy

show more ...

2cf1400026-May-2019 Stefano Zampini <stefano.zampini@gmail.com>

HYPRE: Support --enable-mixedint

9c735a0126-May-2019 Stefano Zampini <stefano.zampini@gmail.com>

Configure: generated package versioning macros


config/framework.py
config/package.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petscds.h
/petsc/include/petscfe.h
/petsc/include/petscfetypes.h
/petsc/include/petscmat.h
/petsc/src/dm/dt/dualspace/impls/bdm/dspacebdm.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex3_nonconforming_tensor_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p1_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p1_3d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p1d_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p1d_2d_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p2_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p2_3d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_p3_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q1_2d_plex_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q1_2d_plex_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q1_2d_plex_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q1_2d_plex_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q2_2d_plex_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q2_2d_plex_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q2_2d_plex_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q2_2d_plex_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_q3_2d_0.out
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/swarm/examples/tests/ex2.c
/petsc/src/mat/examples/tests/ex185.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex185_1.out
/petsc/src/mat/examples/tests/output/ex185_1_alt.out
/petsc/src/mat/impls/cdiagonal/cdiagonal.c
/petsc/src/mat/impls/cdiagonal/makefile
/petsc/src/mat/impls/makefile
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matregis.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/ts/examples/tutorials/ex18.c
23f8cee302-Jun-2019 BarryFSmith <bsmith@mcs.anl.gov>

Merged in barry/more-openmp-work (pull request #1735)

Barry/more openmp work


/petsc/.gitignore
/petsc/.hgignore
config/package.py
config/packages/BlasLapack.py
config/packages/SuperLU_DIST.py
config/packages/hypre.py
config/packages/openblas.py
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashmapiv.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscao.h
/petsc/include/petsccharacteristic.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmpatch.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscdstypes.h
/petsc/include/petscerror.h
/petsc/include/petscfetypes.h
/petsc/include/petscfvtypes.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscoptions.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscpf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/include/petscviewertypes.h
/petsc/lib/petsc/bin/maint/helpindex.py
/petsc/lib/petsc/bin/maint/xclude
/petsc/lib/petsc/conf/rules
/petsc/makefile
/petsc/src/docs/tao_tex/manual/part2b.tex
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_gamg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_gamg_asm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_gamg_bs4.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_gamg_fieldsplit.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_hypre.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_hypre_asm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_hypre_bs4.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_hypre_fieldsplit.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_interface.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex4_reuse.out
/petsc/src/ksp/ksp/utils/schurm/schurm.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/icc/icc.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hmg/hmg.c
/petsc/src/ksp/pc/impls/hmg/makefile
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/kaczmarz/kaczmarz.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/makefile
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/none/none.c
/petsc/src/ksp/pc/impls/pbjacobi/pbjacobi.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/ksp/pc/impls/spai/ispai.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/multequal.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/patch/snespatch.c
/petsc/src/sys/ams/pams.c
/petsc/src/sys/classes/draw/impls/win32/win32draw.c
/petsc/src/sys/classes/draw/impls/x/drawopenx.c
/petsc/src/sys/classes/draw/interface/dclear.c
/petsc/src/sys/classes/draw/interface/dcoor.c
/petsc/src/sys/classes/draw/interface/dflush.c
/petsc/src/sys/classes/draw/interface/dline.c
/petsc/src/sys/classes/draw/interface/dmarker.c
/petsc/src/sys/classes/draw/interface/dpause.c
/petsc/src/sys/classes/draw/interface/dpoint.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/interface/drect.c
/petsc/src/sys/classes/draw/interface/dsave.c
/petsc/src/sys/classes/draw/interface/dtext.c
/petsc/src/sys/classes/draw/interface/dtri.c
/petsc/src/sys/classes/draw/interface/dviewp.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/draw/utils/dscatter.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/classes/draw/utils/lg.c
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/draw/utils/zoom.c
/petsc/src/sys/classes/random/interface/random.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/ams/amsopen.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/ascii/vcreatea.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/draw/drawv.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
/petsc/src/sys/classes/viewer/interface/dupl.c
/petsc/src/sys/classes/viewer/interface/flush.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/classes/viewer/interface/viewa.c
/petsc/src/sys/classes/viewer/interface/viewers.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errabort.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/error/fp.c
/petsc/src/sys/error/pstack.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/fileio/fpath.c
/petsc/src/sys/fileio/fwd.c
/petsc/src/sys/fileio/ghome.c
/petsc/src/sys/fileio/grpath.c
/petsc/src/sys/fileio/mpiuopen.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/fileio/rpath.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mem.c
/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/destroy.c
/petsc/src/sys/objects/gcomm.c
/petsc/src/sys/objects/gtype.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pgname.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/pname.c
/petsc/src/sys/objects/prefix.c
/petsc/src/sys/objects/state.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/utils/fhost.c
/petsc/src/sys/utils/fuser.c
/petsc/src/sys/utils/memc.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/mpiu.c
/petsc/src/sys/utils/pbarrier.c
/petsc/src/sys/utils/psleep.c
/petsc/src/sys/utils/sortd.c
/petsc/src/sys/utils/sorti.c
/petsc/src/sys/utils/sortip.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/leastsquares/examples/tutorials/cs1.c
/petsc/src/tao/leastsquares/examples/tutorials/output/cs1_4.out
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/is/utils/iscomp.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/impls/mpi/commonmpvec.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/vmpicr.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/vseqcr.c
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vscat/interface/vscatfce.c
/petsc/src/vec/vscat/interface/vscreate.c
9b3528b001-Jun-2019 Lisandro Dalcin <dalcinl@gmail.com>

Merged in dalcinl/with-batch (pull request #1721)

WithBatch: More compile-time checks

Approved-by: Jed Brown <jed@59a2.org>

dc0529c627-May-2019 Barry Smith <bsmith@mcs.anl.gov>

Remove legacy and cmake compile systems

- Remove legacy and cmake compile systems from makefiles and config
- Clean out various dead code from makefile and lib/petsc/conf/rules
- Update lib/petsc/co

Remove legacy and cmake compile systems

- Remove legacy and cmake compile systems from makefiles and config
- Clean out various dead code from makefile and lib/petsc/conf/rules
- Update lib/petsc/conf/test to build all examples, not just those beginning with ex, update examples makefiles to remove now unneeded rules
- Deprecated make gnumake, replaced with make libs

Note: retained clean-legacy since it is used by clean in rules

Commit-type: style-fix, feature
Thanks-to: Jed Brown <jed@jedbrown.org> and Satish Balay <balay@mcs.anl.gov>

show more ...


config/packages/make.py
/petsc/config/PETSc/Configure.py
/petsc/config/gmakegen.py
/petsc/config/gmakegentest.py
/petsc/config/install.py
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/test
/petsc/makefile
/petsc/src/benchmarks/makefile
/petsc/src/benchmarks/streams/makefile
/petsc/src/contrib/fun3d/comp/makefile
/petsc/src/contrib/fun3d/incomp/makefile
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/examples/tutorials/makefile
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/snes/examples/tutorials/network/power/makefile
/petsc/src/snes/examples/tutorials/network/water/makefile
/petsc/src/sys/classes/viewer/examples/tests/makefile
/petsc/src/sys/classes/viewer/impls/mathematica/makefile
/petsc/src/sys/webclient/examples/tutorials/makefile
/petsc/src/tao/bound/examples/tutorials/makefile
/petsc/src/tao/complementarity/examples/tutorials/makefile
/petsc/src/tao/constrained/examples/tutorials/makefile
/petsc/src/tao/leastsquares/examples/matlab/makefile
/petsc/src/tao/leastsquares/examples/tests/makefile
/petsc/src/tao/leastsquares/examples/tutorials/makefile
/petsc/src/tao/pde_constrained/examples/tutorials/makefile
/petsc/src/tao/unconstrained/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/eimex/makefile
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/multirate/makefile
/petsc/src/ts/examples/tutorials/network/wash/makefile
/petsc/src/ts/examples/tutorials/phasefield/makefile
/petsc/src/ts/examples/tutorials/power_grid/makefile
/petsc/src/vec/vec/examples/tutorials/makefile
456d523230-May-2019 Barry Smith <bsmith@mcs.anl.gov>

Have BlasLapack search newer MKL install locations before old

Add search for GNU thread based MKL libraries (for use with Gnu compilers).
On compute002 using the threaded ddot() scales very nicely w

Have BlasLapack search newer MKL install locations before old

Add search for GNU thread based MKL libraries (for use with Gnu compilers).
On compute002 using the threaded ddot() scales very nicely with the number of
cores unlike the results on Barry's Mac laptop reported in a previous commit

Note that will will ignore MKL libraries that use TBB threading and only use
ones that use OpenMP threading

Note: the current directory search for MKL libraries is ad hoc and disorganized because it contains
a legacy of older MKL directories. This change tries to have it look in more recent locations for MKL
but it may still at times detect older styles of MKL and accept them before checking newer versions. This
may be problematic for finding MKL libraries that use threading

show more ...

f90b075c30-May-2019 Barry Smith <bsmith@mcs.anl.gov>

Attempt to select and determine MKL libraries that use OpenMP

PetscLogView() now prints the number of OpenMP threads

Using ex43 -n 10000000 -log_view | grep VecDot
On my Apple Mac using the free MK

Attempt to select and determine MKL libraries that use OpenMP

PetscLogView() now prints the number of OpenMP threads

Using ex43 -n 10000000 -log_view | grep VecDot
On my Apple Mac using the free MKL installed from Intel I got speed down on vector operations
Using the MKL that came with the Intel Fortran I also got speed down
But using the MKL that comes with Matlab I got some speedup

Commit-type: feature

show more ...

d7ee99f629-May-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


config/setCompilers.py
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashmapiv.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petscerror.h
/petsc/include/petsctime.h
/petsc/lib/petsc/bin/maint/helpindex.py
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/dt/space/impls/point/spacepoint.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/field/interface/dmfieldregi.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadist.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/daghost.c
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/dagtona.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/dapf.c
/petsc/src/dm/impls/da/dascatter.c
/petsc/src/dm/impls/da/dasub.c
/petsc/src/dm/impls/da/daview.c
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbio.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/glexg.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/ksp/ksp/guess/impls/fischer/fischer.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cgtype.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/gmpre.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/python/pythonksp.c
/petsc/src/ksp/ksp/impls/qcg/qcg.c
/petsc/src/ksp/ksp/impls/rich/richscale.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/ksp/ksp/interface/saws/kspsaws.c
/petsc/src/ksp/ksp/interface/xmon.c
/petsc/src/ksp/ksp/utils/kspmatregi.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/python/pythonpc.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/coarsen/scoarsen.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/color/interface/matcoloringregi.c
/petsc/src/mat/impls/aij/mpi/aijmkl/mpiaijmkl.c
/petsc/src/mat/impls/aij/mpi/aijperm/mpiaijperm.c
/petsc/src/mat/impls/aij/mpi/aijsell/mpiaijsell.c
/petsc/src/mat/impls/aij/mpi/crl/mcrl.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
/petsc/src/mat/impls/aij/seq/aijsell/aijsell.c
/petsc/src/mat/impls/aij/seq/crl/crl.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/mffd/mfregis.c
/petsc/src/mat/impls/python/pythonmat.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/scatter/mscatter.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matreg.c
/petsc/src/mat/interface/matregis.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/order/sregis.c
/petsc/src/mat/partition/impls/chaco/chaco.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/party/party.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/partition/spartition.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/mat/utils/getcolv.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/python/pythonsnes.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/shell/snesshell.c
/petsc/src/snes/interface/dlregissnes.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/saws/snessaws.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.c
/petsc/src/snes/linesearch/impls/shell/linesearchshell.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/linesearch/interface/linesearchregi.c
/petsc/src/snes/utils/convest.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/draw/interface/dellipse.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/random/interface/randreg.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/classlog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/logging/utils/stack.c
/petsc/src/sys/logging/utils/stagelog.c
/petsc/src/sys/logging/xmllogevent.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/subcomm.c
/petsc/src/sys/python/pythonsys.c
/petsc/src/sys/utils/mpiu.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/tao/shell/taoshell.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/mocregis.c
/petsc/src/ts/characteristic/interface/slregis.c
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/explicit/ssp/ssp.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/impls/implicit/glle/glleadapt.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/python/pythonts.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsreg.c
/petsc/src/ts/interface/tsregall.c
/petsc/src/ts/interface/tsrhssplit.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/vec/is/ao/impls/basic/aobasic.c
/petsc/src/vec/is/ao/impls/mapping/aomapping.c
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/ao/interface/aoreg.c
/petsc/src/vec/is/ao/interface/aoregall.c
/petsc/src/vec/is/ao/interface/dlregisdm.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/is/interface/isregall.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/sfregi.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/pf/interface/pfall.c
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/interface/veccreate.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vec/utils/tagger/interface/taggerregi.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscreate.c
e3fe1f8629-May-2019 Satish Balay <balay@mcs.anl.gov>

Merged in jed/fix-checkSizeof (pull request #1727)

Jed/fix checkSizeof

15a5570d29-May-2019 Lisandro Dalcin <dalcinl@gmail.com>

Sys: Include and use limits.h

* Remove configure check for C89 limits.h
* #define PETSC_BITS_PER_BYTE CHAR_BIT
* #define PETSC_IS_COLORING_MAX {UCHAR|USHRT}_MAX

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