History log of /petsc/config/BuildSystem/ (Results 2876 – 2900 of 4739)
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e28ad50602-Dec-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'balay/avoid-fstack-protector-with-brew-gcc/maint' [PR #1253]

* balay/avoid-fstack-protector-with-brew-gcc/maint:
brew-gcc: avoid using -fstack-protector as this gives SEGV for MPICH/Op

Merge branch 'balay/avoid-fstack-protector-with-brew-gcc/maint' [PR #1253]

* balay/avoid-fstack-protector-with-brew-gcc/maint:
brew-gcc: avoid using -fstack-protector as this gives SEGV for MPICH/OpenMPI/PETSc binaries
Ref: https://github.com/pmodels/mpich/issues/3450

show more ...


config/compilerOptions.py
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petsc/finclude/petscts.h
/petsc/include/petsc/private/makefile
/petsc/include/petsc/private/tshistoryimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscmath.h
/petsc/include/petscsnes.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/petsc-performance-view
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/index.html
/petsc/src/snes/impls/ksponly/ksponly.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/sys/examples/tests/ex39.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex39.out
/petsc/src/sys/logging/plog.c
/petsc/src/sys/utils/makefile
/petsc/src/sys/utils/mathclose.c
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/adapt/impls/history/makefile
/petsc/src/ts/adapt/impls/makefile
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tests/ex13.c
/petsc/src/ts/examples/tests/makefile
/petsc/src/ts/examples/tests/output/ex13_1.out
/petsc/src/ts/examples/tests/output/ex13_2.out
/petsc/src/ts/examples/tests/output/ex13_3.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/ex16opt_ic.c
/petsc/src/ts/examples/tutorials/ex16opt_p.c
/petsc/src/ts/examples/tutorials/ex1f.F
/petsc/src/ts/examples/tutorials/ex20adj.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/output/ex20adj_3.out
/petsc/src/ts/examples/tutorials/output/ex20adj_4.out
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busadj_1.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/makefile
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tshistory.c
/petsc/src/ts/trajectory/impls/basic/trajbasic.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/ts/trajectory/impls/singlefile/singlefile.c
/petsc/src/ts/trajectory/impls/visualization/trajvisualization.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/ts/trajectory/makefile
/petsc/src/ts/trajectory/utils/makefile
/petsc/src/ts/trajectory/utils/reconstruct.c
/petsc/src/vec/vec/examples/tutorials/ex18.c
/petsc/src/vec/vec/examples/tutorials/ex19.c
/petsc/src/vec/vec/examples/tutorials/output/ex18_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex18_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_3.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_4.out
6a58016630-Nov-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'stefano_zampini/feature-download-glvis-mfem' [PR #1246]

* stefano_zampini/feature-download-glvis-mfem:
Automatic build of MFEM and GLVis
This branch adds the capability of building MFE

Merge branch 'stefano_zampini/feature-download-glvis-mfem' [PR #1246]

* stefano_zampini/feature-download-glvis-mfem:
Automatic build of MFEM and GLVis
This branch adds the capability of building MFEM http://mfem.org/ and GLVis http://glvis.org/ from within PETSc configure

show more ...


config/package.py
config/packages/GLVis.py
config/packages/MFEM.py
config/packages/opengl.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/makefile
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/sys/classes/draw/impls/makefile
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/interface/drawregall.c
c0f0007430-Nov-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'stefano_zampini/fix-p4est-squashed' [PR #1229]

* stefano_zampini/fix-p4est-squashed:
Few fixes to the p4est/p8est implementations of DMForest.


config/packages/p4est.py
/petsc/config/examples/arch-c-exodus-dbg-builder.py
/petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-pardiso.py
/petsc/include/petsc/private/dmforestimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
/petsc/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/examples/tests/output/ex2_2d.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_3d.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_p4est_3d_nans.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps2.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps2_notfb.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps3.out
/petsc/src/dm/impls/forest/examples/tutorials/ex1.c
/petsc/src/dm/impls/forest/examples/tutorials/output/ex1_brick_periodic_glvis.out
/petsc/src/dm/impls/forest/examples/tutorials/output/ex1_sphere.out
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex12.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_2d_hyb.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_hyb.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_overlapsf.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_s2t_bugfaces_3d.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/mg/makefile
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_fas_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_q1_adapt_0.out
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/ex44.c
/petsc/src/vec/vec/examples/tests/ex5.c
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vinv.c
8359310430-Nov-2018 Satish Balay <balay@mcs.anl.gov>

configure: do not convert options of type '/lib64/libm.so' to '-L/lib64 -lm'

Reported-by: "Syed, Sajid Ali" <sajidsyed2021@u.northwestern.edu>


config/libraries.py
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petscsnes.h
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/mg/makefile
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex3_5.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/objects/pname.c
7aee0a5429-Nov-2018 Satish Balay <balay@mcs.anl.gov>

brew-gcc: avoid using -fstack-protector as this gives SEGV for MPICH/OpenMPI/PETSc binaries


config/compilerOptions.py
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petscsnes.h
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex3_5.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/objects/pname.c
1a20987529-Nov-2018 Lisandro Dalcin <dalcinl@gmail.com>

petsc4py: update with SNESTEST removal


config/packages/petsc4py.py
/petsc/config/gmakegentest.py
/petsc/config/testparse.py
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petscsnes.h
/petsc/include/petscviewer.h
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/share/petsc/datafiles/meshes/barycentricallyrefinedcube.h5
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/examples/tests/output/ex5_0.out
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/examples/tutorials/ex1.c
/petsc/src/dm/field/examples/tutorials/output/ex1_da.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_3.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_shell.out
/petsc/src/dm/impls/plex/examples/tests/ex28.c
/petsc/src/dm/impls/plex/examples/tests/ex29.c
/petsc/src/dm/impls/plex/examples/tests/ex30.c
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex30_1.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex5.c
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_new_dm_view.out
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/swarm/examples/tests/ex1.c
/petsc/src/dm/impls/swarm/examples/tests/ex2.c
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_quad_order_3.out
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex3_5.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/examples/tests/ex44.cxx
/petsc/src/sys/examples/tests/ex45.cxx
/petsc/src/sys/examples/tests/ex46.cxx
/petsc/src/sys/examples/tests/ex47.c
/petsc/src/sys/examples/tests/ex48f90.F90
/petsc/src/sys/examples/tests/ex49.c
/petsc/src/sys/examples/tests/ex50.c
/petsc/src/sys/examples/tests/ex51.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex44_1.out
/petsc/src/sys/examples/tests/output/ex45_1.out
/petsc/src/sys/examples/tests/output/ex46_1.out
/petsc/src/sys/examples/tests/output/ex47_1.out
/petsc/src/sys/examples/tests/output/ex47_2.out
/petsc/src/sys/examples/tests/output/ex48f90_1.out
/petsc/src/sys/examples/tests/output/ex48f90_2.out
/petsc/src/sys/examples/tests/output/ex49_1.out
/petsc/src/sys/examples/tests/output/ex50_1.out
/petsc/src/sys/examples/tests/output/ex51_1.out
/petsc/src/sys/examples/tests/petsc.yml
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/examples/tutorials/ex4.c
/petsc/src/sys/examples/tutorials/ex5.c
/petsc/src/sys/examples/tutorials/ex8f90.F90
/petsc/src/sys/examples/tutorials/makefile
/petsc/src/sys/objects/pname.c
/petsc/src/vec/is/utils/ftn-custom/zvsectionisf.c
/petsc/src/vec/vec/impls/seq/ftn-custom/makefile
9981776927-Nov-2018 Joe Wallwork <j.wallwork16@imperial.ac.uk>

Remove now redundant TODOs


config/packages/ADOLC.py
/petsc/src/ts/examples/tutorials/autodiff/adr_ex1.cpp
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj.cpp
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj_mf.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16adj.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic.cpp
2272ec3327-Nov-2018 Joe Wallwork <j.wallwork16@imperial.ac.uk>

ColPack install script working (thanks to Satish). Documentation for ADOL-C sparse mode.


config/packages/ADOLC.py
config/packages/ColPack.py
/petsc/src/ts/examples/tutorials/autodiff/adr_ex1.cpp
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj.cpp
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj_mf.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16adj.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic.cpp
/petsc/src/ts/examples/tutorials/autodiff/makefile
/petsc/src/ts/examples/tutorials/autodiff/utils/matfree.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/sparse.cpp
739e567226-Nov-2018 Joe Wallwork <j.wallwork16@imperial.ac.uk>

Requirements in ADOL-C install


config/packages/ADOLC.py
config/packages/ColPack.py
/petsc/src/ts/examples/tutorials/autodiff/adr_ex1_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16adj_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/makefile
/petsc/src/ts/examples/tutorials/autodiff/utils/contexts.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/drivers.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/init.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/matfree.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/sparse.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/tests.cpp
d6c2eac227-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

Configure MFEM and GLVIS: use with statement and for opening file and remove redundant cd command in ExecuteShellCommand

reported-by: Jed Brown <jed@jedbrown.org>


config/packages/GLVis.py
config/packages/MFEM.py
b410bcea27-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

configure GLVis: Update commit


config/packages/GLVis.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
9508645419-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

configure: Added MFEM.py


config/packages/MFEM.py
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/makefile
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/sys/classes/draw/impls/makefile
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/interface/drawregall.c
d919435a18-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

config: added package GLVis


config/packages/GLVis.py
7a537b0118-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

config package: minor fixes


config/package.py
1ac0f49518-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

config package openGL: add non-MacOSx support

Added GLU headers
It appears we no longer need a special treatment for MacOSX,
as openGL is shipped in /opt/X11 (at least on my laptop)


config/packages/opengl.py
/petsc/config/gmakegentest.py
/petsc/config/testparse.py
/petsc/src/dm/impls/plex/examples/tests/ex28.c
/petsc/src/dm/impls/plex/examples/tests/ex29.c
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/utils/axpy.c
4848864c30-Oct-2018 Stefano Zampini <stefano.zampini@gmail.com>

Add --download-p4est to few nightly tests configuration

Added libtool and autoreconf sanity checks
We still need a proper check that the version of libtool contains the LC_INIT macro

configure p4es

Add --download-p4est to few nightly tests configuration

Added libtool and autoreconf sanity checks
We still need a proper check that the version of libtool contains the LC_INIT macro

configure p4est: propagate memory alignment

configure: add triangle and ctetgen to arch-pardiso

show more ...


config/packages/p4est.py
/petsc/config/examples/arch-c-exodus-dbg-builder.py
/petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-pardiso.py
/petsc/include/petsc/private/dmforestimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/examples/tests/output/ex2_2d.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_3d.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_p4est_3d_nans.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps2.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps2_notfb.out
/petsc/src/dm/impls/forest/examples/tests/output/ex2_steps3.out
/petsc/src/dm/impls/forest/examples/tutorials/ex1.c
/petsc/src/dm/impls/forest/examples/tutorials/output/ex1_brick_periodic_glvis.out
/petsc/src/dm/impls/forest/examples/tutorials/output/ex1_sphere.out
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex12.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_overlapsf.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_s2t_bugfaces_3d.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_fas_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_q1_adapt_0.out
/petsc/src/ts/examples/tutorials/ex11.c
5fa830a014-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMFOREST: bump up p4est commit with bugfixes


config/packages/p4est.py
/petsc/config/gmakegentest.py
/petsc/config/testparse.py
/petsc/include/petscviewer.h
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/share/petsc/datafiles/meshes/barycentricallyrefinedcube.h5
/petsc/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
/petsc/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/examples/tests/output/ex5_0.out
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/field/examples/tutorials/ex1.c
/petsc/src/dm/field/examples/tutorials/output/ex1_da.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_3.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_shell.out
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex28.c
/petsc/src/dm/impls/plex/examples/tests/ex29.c
/petsc/src/dm/impls/plex/examples/tests/ex30.c
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex30_1.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex5.c
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_new_dm_view.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/impls/swarm/examples/tests/ex1.c
/petsc/src/dm/impls/swarm/examples/tests/ex2.c
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_quad_order_3.out
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex3_5.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/examples/tests/ex44.cxx
/petsc/src/sys/examples/tests/ex45.cxx
/petsc/src/sys/examples/tests/ex46.cxx
/petsc/src/sys/examples/tests/ex47.c
/petsc/src/sys/examples/tests/ex48f90.F90
/petsc/src/sys/examples/tests/ex49.c
/petsc/src/sys/examples/tests/ex50.c
/petsc/src/sys/examples/tests/ex51.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex44_1.out
/petsc/src/sys/examples/tests/output/ex45_1.out
/petsc/src/sys/examples/tests/output/ex46_1.out
/petsc/src/sys/examples/tests/output/ex47_1.out
/petsc/src/sys/examples/tests/output/ex47_2.out
/petsc/src/sys/examples/tests/output/ex48f90_1.out
/petsc/src/sys/examples/tests/output/ex48f90_2.out
/petsc/src/sys/examples/tests/output/ex49_1.out
/petsc/src/sys/examples/tests/output/ex50_1.out
/petsc/src/sys/examples/tests/output/ex51_1.out
/petsc/src/sys/examples/tests/petsc.yml
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/examples/tutorials/ex4.c
/petsc/src/sys/examples/tutorials/ex5.c
/petsc/src/sys/examples/tutorials/ex8f90.F90
/petsc/src/sys/examples/tutorials/makefile
/petsc/src/vec/is/utils/ftn-custom/zvsectionisf.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/ex44.c
/petsc/src/vec/vec/examples/tests/ex5.c
/petsc/src/vec/vec/impls/seq/ftn-custom/makefile
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vinv.c
552666a321-Nov-2018 jwallwork23 <j.wallwork16@imperial.ac.uk>

ADOL-C working for simple Van der Pol example. Drivers included in utils file


config/packages/ADOLC.py
/petsc/src/ts/examples/tutorials/autodiff/ex16adj_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/makefile
/petsc/src/ts/examples/tutorials/autodiff/utils/contexts.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/drivers.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/init.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/makefile
/petsc/src/ts/examples/tutorials/autodiff/utils/matfree.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/sparse.cpp
/petsc/src/ts/examples/tutorials/autodiff/utils/tests.cpp
0b4b53be20-Nov-2018 jwallwork23 <j.wallwork16@imperial.ac.uk>

ADOL-C download and install working


config/packages/ADOLC.py
b726f7bd20-Nov-2018 jwallwork23 <j.wallwork16@imperial.ac.uk>

Tag as argument

Started on intall script for ADOL-C


config/package.py
config/packages/ADOLC.py
/petsc/src/ts/examples/tutorials/autodiff/ex16adj_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic_ad.cpp
47e7208015-Nov-2018 jwallwork23 <j.wallwork16@imperial.ac.uk>

autodiff directory in ts/examples/tutorials


config/packages/ADOLC.py
/petsc/config/gmakegentest.py
/petsc/config/testparse.py
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/src/dm/impls/plex/examples/tests/ex28.c
/petsc/src/dm/impls/plex/examples/tests/ex29.c
/petsc/src/dm/impls/plex/examples/tests/output/ex29_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex29_quad_0.out
/petsc/src/dm/impls/swarm/examples/tests/ex1.c
/petsc/src/dm/impls/swarm/examples/tests/ex2.c
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_2.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_quad_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_0.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_2_faces_quad_order_3.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_3d_mdx_5P_2_faces.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_mdx_5P.out
/petsc/src/dm/impls/swarm/examples/tests/output/ex2_proj_tri_quad_order_3.out
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/utils/axpy.c
/petsc/src/sys/examples/tests/ex44.cxx
/petsc/src/sys/examples/tests/ex45.cxx
/petsc/src/sys/examples/tests/ex46.cxx
/petsc/src/sys/examples/tests/ex47.c
/petsc/src/sys/examples/tests/ex48f90.F90
/petsc/src/sys/examples/tests/ex49.c
/petsc/src/sys/examples/tests/ex50.c
/petsc/src/sys/examples/tests/ex51.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex44_1.out
/petsc/src/sys/examples/tests/output/ex45_1.out
/petsc/src/sys/examples/tests/output/ex46_1.out
/petsc/src/sys/examples/tests/output/ex47_1.out
/petsc/src/sys/examples/tests/output/ex47_2.out
/petsc/src/sys/examples/tests/output/ex48f90_1.out
/petsc/src/sys/examples/tests/output/ex48f90_2.out
/petsc/src/sys/examples/tests/output/ex49_1.out
/petsc/src/sys/examples/tests/output/ex50_1.out
/petsc/src/sys/examples/tests/output/ex51_1.out
/petsc/src/sys/examples/tests/petsc.yml
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/examples/tutorials/ex4.c
/petsc/src/sys/examples/tutorials/ex5.c
/petsc/src/sys/examples/tutorials/ex8f90.F90
/petsc/src/sys/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/autodiff/ex16adj_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic_ad.cpp
/petsc/src/ts/examples/tutorials/autodiff/makefile
b4eeb9b217-Nov-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/packages/MUMPS.py
/petsc/config/install.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscerror.h
/petsc/include/petscmath.h
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/output/ex18_4_tet_test_orient.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/snes/examples/tutorials/ex5f.F90
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/vec/vec/interface/rvector.c
4b3f481416-Nov-2018 Satish Balay <balay@mcs.anl.gov>

mumps: use workarround for gfortran-8

Reported-by: Sébastien Gilles <sebastien.gilles@inria.fr>


config/packages/MUMPS.py
/petsc/config/examples/arch-jenkins-linux-gcc-pkgs-opt.py
/petsc/config/install.py
/petsc/include/petscsys.h
/petsc/src/dm/dt/interface/ftn-custom/zdtfef.c
/petsc/src/dm/impls/da/ftn-custom/zdacornf.c
/petsc/src/dm/impls/da/ftn-custom/zdaindexf.c
/petsc/src/dm/impls/plex/ftn-custom/zplexcreate.c
/petsc/src/dm/impls/plex/ftn-custom/zplexexodusii.c
/petsc/src/dm/impls/plex/ftn-custom/zplexfluent.c
/petsc/src/dm/impls/plex/ftn-custom/zplexgmsh.c
/petsc/src/dm/impls/plex/ftn-custom/zplexsubmesh.c
/petsc/src/dm/interface/ftn-custom/zdmf.c
/petsc/src/dm/interface/ftn-custom/zdmgetf.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/ksp/ksp/impls/python/ftn-custom/zpythonkspf.c
/petsc/src/ksp/ksp/interface/ftn-custom/ziguess.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitclf.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitcreatef.c
/petsc/src/ksp/pc/impls/composite/ftn-custom/zcompositef.c
/petsc/src/ksp/pc/impls/factor/ftn-custom/zluf.c
/petsc/src/ksp/pc/impls/fieldsplit/ftn-custom/zfieldsplitf.c
/petsc/src/ksp/pc/impls/gamg/ftn-custom/zgamgf.c
/petsc/src/ksp/pc/impls/hypre/ftn-custom/zhypref.c
/petsc/src/ksp/pc/impls/python/ftn-custom/zpythonpcf.c
/petsc/src/ksp/pc/impls/shell/ftn-custom/zshellpcf.c
/petsc/src/ksp/pc/interface/ftn-custom/zpreconf.c
/petsc/src/mat/color/interface/ftn-custom/zmatcoloringf.c
/petsc/src/mat/impls/fft/ftn-custom/zfftf.c
/petsc/src/mat/impls/mffd/ftn-custom/zmffdf.c
/petsc/src/mat/impls/python/ftn-custom/zpythonmf.c
/petsc/src/mat/interface/ftn-custom/zmatregf.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/matfd/ftn-custom/zfdmatrixf.c
/petsc/src/mat/order/ftn-custom/zsorderf.c
/petsc/src/mat/partition/ftn-custom/zpartitionf.c
/petsc/src/mat/partition/impls/party/ftn-custom/zpartyf.c
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex5f.F90
/petsc/src/snes/impls/python/ftn-custom/zpythonsf.c
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/linesearch/interface/ftn-custom/zlinesearchf.c
/petsc/src/sys/classes/bag/f90-custom/zbagf90.c
/petsc/src/sys/classes/bag/ftn-custom/zbagf.c
/petsc/src/sys/classes/draw/impls/x/ftn-custom/zdrawopenxf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdrawf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdrawregf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdtextf.c
/petsc/src/sys/classes/draw/utils/ftn-custom/zaxisf.c
/petsc/src/sys/classes/draw/utils/ftn-custom/zlgcf.c
/petsc/src/sys/classes/matlabengine/ftn-custom/zmatlabf.c
/petsc/src/sys/classes/random/interface/ftn-custom/zrandomf.c
/petsc/src/sys/classes/viewer/impls/ascii/ftn-custom/zfilevf.c
/petsc/src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.c
/petsc/src/sys/classes/viewer/impls/binary/ftn-custom/zbinvf.c
/petsc/src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c
/petsc/src/sys/classes/viewer/impls/hdf5/ftn-custom/zhdf5f.c
/petsc/src/sys/classes/viewer/impls/matlab/ftn-custom/zvmatlabf.c
/petsc/src/sys/classes/viewer/impls/socket/ftn-custom/zsendf.c
/petsc/src/sys/classes/viewer/impls/vtk/ftn-custom/zvtkvf.c
/petsc/src/sys/classes/viewer/interface/ftn-custom/zviewaf.c
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fileio/ftn-custom/zmpiuopenf.c
/petsc/src/sys/fileio/ftn-custom/zsysiof.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/objects/ftn-custom/zdestroyf.c
/petsc/src/sys/objects/ftn-custom/zgtype.c
/petsc/src/sys/objects/ftn-custom/zinheritf.c
/petsc/src/sys/objects/ftn-custom/zoptionsf.c
/petsc/src/sys/objects/ftn-custom/zpnamef.c
/petsc/src/sys/objects/ftn-custom/zprefixf.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/yaml/ftn-custom/zyamlimplsf.c
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.c
/petsc/src/ts/adapt/impls/dsp/ftn-custom/zadaptdspf.c
/petsc/src/ts/adapt/interface/ftn-custom/ztsadaptf.c
/petsc/src/ts/impls/arkimex/ftn-custom/zarkimexf.c
/petsc/src/ts/impls/explicit/rk/ftn-custom/zrkf.c
/petsc/src/ts/impls/explicit/ssp/ftn-custom/zsspf.c
/petsc/src/ts/impls/python/ftn-custom/zpythontf.c
/petsc/src/ts/impls/rosw/ftn-custom/zroswf.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
/petsc/src/ts/interface/ftn-custom/ztsregf.c
/petsc/src/ts/trajectory/interface/ftn-custom/ztrajf.c
/petsc/src/vec/is/ao/interface/ftn-custom/zaof.c
/petsc/src/vec/vec/impls/seq/ftn-custom/zvsectionf.c
/petsc/src/vec/vec/interface/ftn-custom/zvecregf.c
/petsc/src/vec/vec/interface/ftn-custom/zvectorf.c
d54ffaeb12-Nov-2018 Barry Smith <bsmith@mcs.anl.gov>

adblaslapack depends on CoDiPack so add deps definition to adblaslapack.py configuration file

Commit-type: bug-fix
Reported-by: nightly tests


config/packages/adblaslapack.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/src/dm/impls/plex/plexreorder.c
06837bf011-Nov-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'knepley/feature-pragmatic-configure' [PR #1223]

* knepley/feature-pragmatic-configure:
Improved handling of Pragmatic configure.


config/package.py
config/packages/pragmatic.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-linux-pkgs-valgrind.py
/petsc/config/examples/arch-osx-10.6.py
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsys.h
/petsc/src/dm/dt/interface/ftn-custom/zdtfef.c
/petsc/src/dm/impls/da/ftn-custom/zdacornf.c
/petsc/src/dm/impls/da/ftn-custom/zdaindexf.c
/petsc/src/dm/impls/plex/ftn-custom/zplexcreate.c
/petsc/src/dm/impls/plex/ftn-custom/zplexexodusii.c
/petsc/src/dm/impls/plex/ftn-custom/zplexfluent.c
/petsc/src/dm/impls/plex/ftn-custom/zplexgmsh.c
/petsc/src/dm/impls/plex/ftn-custom/zplexsubmesh.c
/petsc/src/dm/interface/ftn-custom/zdmf.c
/petsc/src/dm/interface/ftn-custom/zdmgetf.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/ksp/impls/python/ftn-custom/zpythonkspf.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/ftn-custom/ziguess.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitclf.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitcreatef.c
/petsc/src/ksp/pc/impls/composite/ftn-custom/zcompositef.c
/petsc/src/ksp/pc/impls/factor/ftn-custom/zluf.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/fieldsplit/ftn-custom/zfieldsplitf.c
/petsc/src/ksp/pc/impls/gamg/ftn-custom/zgamgf.c
/petsc/src/ksp/pc/impls/hypre/ftn-custom/zhypref.c
/petsc/src/ksp/pc/impls/python/ftn-custom/zpythonpcf.c
/petsc/src/ksp/pc/impls/shell/ftn-custom/zshellpcf.c
/petsc/src/ksp/pc/interface/ftn-custom/zpreconf.c
/petsc/src/mat/color/interface/ftn-custom/zmatcoloringf.c
/petsc/src/mat/impls/fft/ftn-custom/zfftf.c
/petsc/src/mat/impls/mffd/ftn-custom/zmffdf.c
/petsc/src/mat/impls/python/ftn-custom/zpythonmf.c
/petsc/src/mat/interface/ftn-custom/zmatregf.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/matfd/ftn-custom/zfdmatrixf.c
/petsc/src/mat/order/ftn-custom/zsorderf.c
/petsc/src/mat/partition/ftn-custom/zpartitionf.c
/petsc/src/mat/partition/impls/party/ftn-custom/zpartyf.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/examples/tutorials/output/ex70_5.out
/petsc/src/snes/examples/tutorials/output/ex70_6.out
/petsc/src/snes/examples/tutorials/output/ex70_7.out
/petsc/src/snes/impls/python/ftn-custom/zpythonsf.c
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/linesearch/interface/ftn-custom/zlinesearchf.c
/petsc/src/sys/classes/bag/f90-custom/zbagf90.c
/petsc/src/sys/classes/bag/ftn-custom/zbagf.c
/petsc/src/sys/classes/draw/impls/x/ftn-custom/zdrawopenxf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdrawf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdrawregf.c
/petsc/src/sys/classes/draw/interface/ftn-custom/zdtextf.c
/petsc/src/sys/classes/draw/utils/ftn-custom/zaxisf.c
/petsc/src/sys/classes/draw/utils/ftn-custom/zlgcf.c
/petsc/src/sys/classes/matlabengine/ftn-custom/zmatlabf.c
/petsc/src/sys/classes/random/interface/ftn-custom/zrandomf.c
/petsc/src/sys/classes/viewer/impls/ascii/ftn-custom/zfilevf.c
/petsc/src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.c
/petsc/src/sys/classes/viewer/impls/binary/ftn-custom/zbinvf.c
/petsc/src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c
/petsc/src/sys/classes/viewer/impls/hdf5/ftn-custom/zhdf5f.c
/petsc/src/sys/classes/viewer/impls/matlab/ftn-custom/zvmatlabf.c
/petsc/src/sys/classes/viewer/impls/socket/ftn-custom/zsendf.c
/petsc/src/sys/classes/viewer/impls/vtk/ftn-custom/zvtkvf.c
/petsc/src/sys/classes/viewer/interface/ftn-custom/zviewaf.c
/petsc/src/sys/fileio/ftn-custom/zmpiuopenf.c
/petsc/src/sys/fileio/ftn-custom/zsysiof.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/objects/ftn-custom/zdestroyf.c
/petsc/src/sys/objects/ftn-custom/zgtype.c
/petsc/src/sys/objects/ftn-custom/zinheritf.c
/petsc/src/sys/objects/ftn-custom/zoptionsf.c
/petsc/src/sys/objects/ftn-custom/zpnamef.c
/petsc/src/sys/objects/ftn-custom/zprefixf.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/yaml/ftn-custom/zyamlimplsf.c
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.c
/petsc/src/ts/adapt/impls/dsp/ftn-custom/zadaptdspf.c
/petsc/src/ts/adapt/interface/ftn-custom/ztsadaptf.c
/petsc/src/ts/impls/arkimex/ftn-custom/zarkimexf.c
/petsc/src/ts/impls/explicit/rk/ftn-custom/zrkf.c
/petsc/src/ts/impls/explicit/ssp/ftn-custom/zsspf.c
/petsc/src/ts/impls/python/ftn-custom/zpythontf.c
/petsc/src/ts/impls/rosw/ftn-custom/zroswf.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
/petsc/src/ts/interface/ftn-custom/ztsregf.c
/petsc/src/ts/trajectory/interface/ftn-custom/ztrajf.c
/petsc/src/vec/is/ao/interface/ftn-custom/zaof.c
/petsc/src/vec/vec/impls/seq/ftn-custom/zvsectionf.c
/petsc/src/vec/vec/interface/ftn-custom/zvecregf.c
/petsc/src/vec/vec/interface/ftn-custom/zvectorf.c

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