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8a84861724-Jul-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


/petsc/Jenkinsfile
config/functions.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-cuda-double.py
/petsc/config/examples/arch-cuda-single.py
/petsc/config/examples/arch-mswin-cuda.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscoptions.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petscviewer.h
/petsc/src/dm/examples/tests/ex47.c
/petsc/src/dm/examples/tests/ex48.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex47_1.out
/petsc/src/dm/examples/tests/output/ex48_1.out
/petsc/src/dm/examples/tests/output/ex48_2.out
/petsc/src/dm/examples/tests/output/ex48_3.out
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/examples/tests/ex12.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_13.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_14.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_9.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/mat/examples/tests/ex225.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex225_1.out
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/hypre/mhypre.h
/petsc/src/snes/examples/tests/ex17.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex9_1.out
/petsc/src/snes/examples/tutorials/output/ex9_2.out
/petsc/src/snes/examples/tutorials/output/ex9_3.out
/petsc/src/snes/examples/tutorials/output/ex9_4.out
/petsc/src/snes/examples/tutorials/output/ex9_5.out
/petsc/src/snes/examples/tutorials/output/ex9_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex9_6.out
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/examples/tests/ex20.c
/petsc/src/sys/examples/tests/ex5.c
/petsc/src/sys/examples/tests/ex6.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex6_1.out
/petsc/src/sys/examples/tutorials/output/ex5_yaml.out
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/destroy.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_13.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_14.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_15.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_17.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_18.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_7.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_8.out
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_9.out
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F90
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F90
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1_1_alt.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut1f_1_alt.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1_alt.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1_alt_2.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1.out
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2f_1_alt.out
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.h
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2f_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_20.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5opt_ic_1.out
/petsc/src/ts/examples/tutorials/ex43.c
/petsc/src/vec/vec/examples/tests/ex43.c
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat.h
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/vscat.c
7b56e58c24-Jul-2018 Satish Balay <balay@mcs.anl.gov>

adios: fixes

- fix configure to pass in MPI compilers [instead of --with-mpi=DIR. Similarly attempt to use PETSc configure detected values for hdf5, netcdf, zlib etc..
- fix compiler error with usin

adios: fixes

- fix configure to pass in MPI compilers [instead of --with-mpi=DIR. Similarly attempt to use PETSc configure detected values for hdf5, netcdf, zlib etc..
- fix compiler error with using '0' for ADIOS_STATISTICS_FLAG
- declare Petsc_adios_group as PETSC_EXTERN - this way its useable from -lpetscvec [with-visibility=1]
- also move Petsc_adios_group to petscimpl.h - to avoid duplicate definitions
- fix fortran examples [by adding adios initialization to fortran interface
- fix compile error with ex10

show more ...


config/packages/ADIOS.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/include/petsc/finclude/petscviewer.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vieweradios2impl.h
/petsc/include/petsc/private/vieweradiosimpl.h
/petsc/include/petscviewer.h
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios/makefile
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/adios2/makefile
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/makefile
/petsc/src/sys/classes/viewer/interface/viewregall.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
/petsc/src/vec/vec/examples/tutorials/ex10.c
/petsc/src/vec/vec/examples/tutorials/output/ex10_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_3.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_4.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_5.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_6.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vecio.c
cb07359a24-Jul-2018 Satish Balay <balay@mcs.anl.gov>

PYTHON_LIB: remove hakey code for OSX and replace with more general code


config/packages/petsc4py.py
/petsc/src/sys/python/pythonsys.c
5d68295224-Jul-2018 Satish Balay <balay@mcs.anl.gov>

petsc4py: update to latest 3.9/'maint' snapshot


config/packages/petsc4py.py
/petsc/src/sys/python/pythonsys.c
42e8402824-Jul-2018 Satish Balay <balay@mcs.anl.gov>

petsc4py: correct PYTHON_EXE should be set by configure when using --download-petsc4py - esp with --download-petsc4py-python=python3


config/packages/petsc4py.py
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_seqaijmkl.out
/petsc/src/mat/examples/tests/ex225.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex225_1.out
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/hypre/mhypre.h
/petsc/src/sys/python/pythonsys.c
9dcccc9a24-Jul-2018 Satish Balay <balay@mcs.anl.gov>

windows: fix memmove() check for VS 2017


config/functions.py
/petsc/config/PETSc/Configure.py
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_seqaijmkl.out
/petsc/src/mat/examples/tests/ex225.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex225_1.out
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/hypre/mhypre.h
43ee7ef113-Jul-2018 Matthew G. Knepley <knepley@gmail.com>

Configure: Pragmatic now requires Cxx11


config/packages/pragmatic.py
/petsc/gmakefile
/petsc/include/petsc/mpiuni/mpif.h
/petsc/src/dm/impls/plex/examples/tests/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tests/ex2f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/sys/examples/tests/ex1f.F90
/petsc/src/sys/examples/tests/ex38f.F90
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex38f_1.out
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fsrc/somefort.F
/petsc/src/sys/mpiuni/f90-mod/mpiunimod.F
/petsc/src/sys/mpiuni/fsrc/somempifort.F
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
07efb9c909-Jul-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/stefano_zampini/feature-mataij-to-matis'


config/libraries.py
config/package.py
config/packages/PTScotch.py
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex23_1.out
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_parmetis.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_ptscotch.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_seq.out
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/mat/examples/tests/ex111.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex40.c
/petsc/src/mat/examples/tests/ex55.c
/petsc/src/mat/examples/tests/ex73.c
/petsc/src/mat/examples/tests/output/ex111_1.out
/petsc/src/mat/examples/tests/output/ex111_2.out
/petsc/src/mat/examples/tests/output/ex23_1.out
/petsc/src/mat/examples/tests/output/ex23_10.out
/petsc/src/mat/examples/tests/output/ex23_11.out
/petsc/src/mat/examples/tests/output/ex23_2.out
/petsc/src/mat/examples/tests/output/ex23_3.out
/petsc/src/mat/examples/tests/output/ex23_4.out
/petsc/src/mat/examples/tests/output/ex23_5.out
/petsc/src/mat/examples/tests/output/ex23_6.out
/petsc/src/mat/examples/tests/output/ex23_7.out
/petsc/src/mat/examples/tests/output/ex23_8.out
/petsc/src/mat/examples/tests/output/ex23_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/vec/is/is/utils/iscoloring.c
388d33c609-Jul-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/packages/cmake.py
/petsc/include/petscmath.h
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_seqaijmkl.out
ad33995b06-Jul-2018 Satish Balay <balay@mcs.anl.gov>

cmake: downgrade to version 3.9 - as newer versions require cxx11 compiler [which is not universal].
However stick with version 3.11 on opensolaris

Reported on Titan, old OSX software stack

Reporte

cmake: downgrade to version 3.9 - as newer versions require cxx11 compiler [which is not universal].
However stick with version 3.11 on opensolaris

Reported on Titan, old OSX software stack

Reported-by: Mark Adams <mfadams@lbl.gov>
Reported-by: Matthew Knepley <knepley@gmail.com>

show more ...


config/packages/cmake.py
/petsc/include/petscmath.h
/petsc/src/mat/interface/matreg.c
4d43cd7a05-Jul-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/compilers.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscversion.h
/petsc/src/dm/examples/tests/ex46.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex46_1.out
/petsc/src/dm/examples/tests/output/ex46_2.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/f90-custom/zda1f90.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018.docx
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018LastPage.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018Page2.pdf
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/network/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex15_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex15f_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex1_3.out
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/petsc/src/ts/examples/tutorials/output/ex4_1.out
/petsc/src/ts/examples/tutorials/output/ex4_2.out
/petsc/src/ts/examples/tutorials/output/ex4_3.out
/petsc/src/ts/examples/tutorials/output/ex4_4.out
/petsc/src/ts/examples/tutorials/output/ex50_3.out
/petsc/src/ts/examples/tutorials/output/ex50_4.out
/petsc/src/ts/examples/tutorials/output/ex5_1.out
/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/ex6_1.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isblock.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/examples/tests/output/ex32f_1.out
/petsc/src/vec/vec/examples/tests/output/ex41_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex4f_1.out
/petsc/src/vec/vec/utils/projection.c
6e94785501-May-2018 Stefano Zampini <stefano.zampini@gmail.com>

configure PTSCOTCH: build the compatibility layer with ParMETIS by prepending the SCOTCH prefix

Add test to check if any provided PTSCOTCH provides the symbol


config/packages/PTScotch.py
449d737101-May-2018 Stefano Zampini <stefano.zampini@gmail.com>

configure: add slot for optional functions we wish to test for that will generate a PETSC_HAVE_FUNCTIONAME symbol


config/libraries.py
config/package.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscversion.h
/petsc/src/dm/examples/tests/ex46.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex46_1.out
/petsc/src/dm/examples/tests/output/ex46_2.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/f90-custom/zda1f90.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018.docx
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018LastPage.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018Page2.pdf
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/network/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex15_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex15f_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex1_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex28_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_bjacobi_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_hypre_nullspace.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_nonsymmetric_left.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_nonsymmetric_right.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/tsirm/tsirm.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/utils/kspmatregi.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/makefile
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/makefile
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.c
/petsc/src/ksp/ksp/utils/lmvm/brdn/makefile
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/makefile
/petsc/src/ksp/ksp/utils/lmvm/lmvm.h
/petsc/src/ksp/ksp/utils/lmvm/lmvmimpl.c
/petsc/src/ksp/ksp/utils/lmvm/lmvmutils.c
/petsc/src/ksp/ksp/utils/lmvm/makefile
/petsc/src/ksp/ksp/utils/lmvm/sr1/makefile
/petsc/src/ksp/ksp/utils/lmvm/sr1/sr1.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/makefile
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h
/petsc/src/ksp/ksp/utils/makefile
/petsc/src/ksp/ksp/utils/schurm/makefile
/petsc/src/ksp/ksp/utils/schurm/schurm.c
/petsc/src/ksp/ksp/utils/schurm/schurm.h
/petsc/src/ksp/pc/examples/tests/output/ex6_1.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/fieldsplit/ftn-custom/zfieldsplitf.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/lmvm/lmvmpc.c
/petsc/src/ksp/pc/impls/lmvm/makefile
/petsc/src/ksp/pc/impls/makefile
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex214.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex55.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/examples/tests/ex9.c
/petsc/src/mat/examples/tests/output/ex191_1.out
/petsc/src/mat/examples/tests/output/ex23_1.out
/petsc/src/mat/examples/tests/output/ex23_10.out
/petsc/src/mat/examples/tests/output/ex23_11.out
/petsc/src/mat/examples/tests/output/ex23_2.out
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/petsc/src/mat/examples/tests/output/ex23_9.out
/petsc/src/mat/examples/tests/output/ex88_1.out
/petsc/src/mat/examples/tests/output/ex9_1.out
/petsc/src/mat/examples/tutorials/output/ex15_2.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/examples/tutorials/output/ex12_amr_1.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
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/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_conformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_conformal_parallel_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_nonconformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_nonconformal_parallel_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_nonconformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tensor_p4est_2d.out
/petsc/src/snes/examples/tutorials/output/ex12_tensor_p4est_3d.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex33_0.out
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/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_pc_simplec.out
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/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
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/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/examples/tutorials/output/ex70_4_pcksp.out
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/snesngmres.h
/petsc/src/snes/impls/richardson/snesrichardson.c
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/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/mf/makefile
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/random/examples/tutorials/ex2.c
/petsc/src/sys/classes/viewer/impls/ascii/asciiimpl.h
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.h
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/dll/reg.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/error/signal.c
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/petsc/src/sys/fileio/mprint.c
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/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mem.c
/petsc/src/sys/memory/mhbw.c
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/petsc/src/sys/objects/ftn-custom/zstart.c
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/petsc/src/sys/utils/mpits.c
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/petsc/src/sys/utils/pbarrier.c
/petsc/src/sys/yaml/yamlimpls.c
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/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
/petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral.out
/petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_4.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_5.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_6.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_6_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_7.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_7_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2f_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2f_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_4.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_5.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_6.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_7.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_8.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_9.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_10.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_11.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_12.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_13.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_14.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_15.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_16.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_17.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_18.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_19.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_7.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_8_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_9_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1f_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_cn.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.h
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/nls/nlsimpl.h
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntl/ntlimpl.h
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/ntr/ntrimpl.h
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex1_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex2_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex4_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5_1.out
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/output/ex19_pi42.out
/petsc/src/ts/examples/tutorials/output/ex20opt_ic_1.out
/petsc/src/ts/examples/tutorials/output/ex20opt_p_1.out
/petsc/src/ts/examples/tutorials/output/ex31_2.out
/petsc/src/ts/examples/tutorials/output/ex3_1.out
/petsc/src/ts/examples/tutorials/output/ex3_2.out
/petsc/src/ts/examples/tutorials/output/ex4_1.out
/petsc/src/ts/examples/tutorials/output/ex4_2.out
/petsc/src/ts/examples/tutorials/output/ex4_3.out
/petsc/src/ts/examples/tutorials/output/ex4_4.out
/petsc/src/ts/examples/tutorials/output/ex50_3.out
/petsc/src/ts/examples/tutorials/output/ex50_4.out
/petsc/src/ts/examples/tutorials/output/ex5_1.out
/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/ex6_1.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isblock.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/examples/tests/output/ex32f_1.out
/petsc/src/vec/vec/examples/tests/output/ex41_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex4f_1.out
/petsc/src/vec/vec/utils/projection.c
8ad6470703-Jul-2018 Min RK <benjaminrk@gmail.com>

libgcc_ext.10.5 and libSystem are system libraries

avoid pulling them in from library detection


config/compilers.py
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petscversion.h
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/network/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex15_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex15f_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex1_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex28_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_bjacobi_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_hypre_nullspace.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_nonsymmetric_left.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_nonsymmetric_right.out
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/examples/tests/output/ex6_1.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/examples/tests/ex9.c
/petsc/src/mat/examples/tests/output/ex191_1.out
/petsc/src/mat/examples/tests/output/ex88_1.out
/petsc/src/mat/examples/tests/output/ex9_1.out
/petsc/src/mat/examples/tutorials/output/ex15_2.out
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/snes/examples/tutorials/output/ex33_0.out
/petsc/src/snes/examples/tutorials/output/ex48_1.out
/petsc/src/snes/examples/tutorials/output/ex48_2.out
/petsc/src/snes/examples/tutorials/output/ex48_5.out
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/sys/classes/random/examples/tutorials/ex2.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/examples/tests/output/ex1f_1.out
/petsc/src/sys/examples/tests/output/ex2_1.out
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/gcomm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex1_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex2_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex4_1.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5_1.out
/petsc/src/ts/examples/tutorials/output/ex19_pi42.out
/petsc/src/ts/examples/tutorials/output/ex31_2.out
/petsc/src/ts/examples/tutorials/output/ex3_1.out
/petsc/src/ts/examples/tutorials/output/ex3_2.out
/petsc/src/ts/examples/tutorials/output/ex4_1.out
/petsc/src/ts/examples/tutorials/output/ex4_2.out
/petsc/src/ts/examples/tutorials/output/ex4_3.out
/petsc/src/ts/examples/tutorials/output/ex4_4.out
/petsc/src/ts/examples/tutorials/output/ex50_3.out
/petsc/src/ts/examples/tutorials/output/ex50_4.out
/petsc/src/ts/examples/tutorials/output/ex5_1.out
/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/ex6_1.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isblock.c
/petsc/src/vec/vec/examples/tests/output/ex32f_1.out
/petsc/src/vec/vec/examples/tests/output/ex41_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex4f_1.out
9dca6a6304-Jul-2018 Satish Balay <balay@mcs.anl.gov>

petsc4py: update to snapshot with DMCARTESIAN change


config/packages/petsc4py.py
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/share/petsc/datafiles/meshes/hybrid_tetwedge.msh
/petsc/share/petsc/datafiles/meshes/hybrid_triquad.msh
/petsc/share/petsc/datafiles/meshes/surfacesphere_bin.msh
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t_parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_wedge.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_13_hybs2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_vtk.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_1.out
/petsc/src/dm/impls/plex/glexg.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/plex/plexvtu.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/snes/examples/tutorials/ex99.c
/petsc/src/snes/examples/tutorials/output/ex99_1.out
/petsc/src/snes/examples/tutorials/output/ex99_2.out
/petsc/src/snes/examples/tutorials/output/ex99_3.out
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/utils/str.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_0.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_1.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out
636bbc2528-Jun-2018 Barry Smith <bsmith@mcs.anl.gov>

adblaslapack installer now installs adblaslapack.hpp include file

Commit-type: feature


config/packages/adblaslapack.py
ff54fdf827-Jun-2018 Barry Smith <bsmith@mcs.anl.gov>

Switch CoDiPack download to master since adblaslapack doesn't build with v1.6 on Apple

Commit-type: portability-fix
Reported-by: Michel Schanen <mschanen@anl.gov>


config/packages/CoDiPack.py
34e9d0e727-Jun-2018 Matthew G. Knepley <knepley@gmail.com>

Configure+p4est: Update to Toby's fix for the p4est link


config/packages/p4est.py
/petsc/include/petscdmlabel.h
/petsc/include/petscdmplex.h
/petsc/lib/petsc/conf/test
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex23_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_hex_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_hex_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_hex_t1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_hex_t2_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_quad_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_quad_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_quad_t1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tet_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tet_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tet_t1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tri_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tri_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex5_tri_t1_0.out
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/vec/interface/rvector.c
783615f226-Jun-2018 Barry Smith <bsmith@mcs.anl.gov>

Add support for downloading and installing CoDiPack and adblaslapack.py

These are possibly useful for using AD in PETSc examples
Commit-type: feature
Thanks-to: Michel Schanen <mschanen@anl.gov>


config/packages/CoDiPack.py
config/packages/adblaslapack.py
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/sys/utils/str.c
ea847aab24-Jun-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/dalcinl/logging'


config/packages/petsc4py.py
/petsc/include/petsclog.h
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/interface/dlregissnes.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/tao/interface/dlregistao.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/slregis.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/is/ao/interface/dlregisdm.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
29e3991124-Jun-2018 Lisandro Dalcin <dalcinl@gmail.com>

config: Update petsc4py git commit


config/packages/petsc4py.py
/petsc/include/petsclog.h
/petsc/lib/petsc/bin/maint/buildtest
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/interface/dlregissnes.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/tao/interface/dlregistao.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/slregis.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/is/ao/interface/dlregisdm.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscreate.c
61876ed424-Jun-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/compilers.py
/petsc/config/PETSc/Configure.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscsys.h
/petsc/lib/petsc/bin/maint/buildtest
/petsc/src/dm/examples/tutorials/ex11f90.F90
/petsc/src/docs/tex/manual/ArgonneReportTemplate.doc
/petsc/src/docs/tex/manual/ArgonneReportTemplateLastPage.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplatePage2.pdf
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex6f.F90
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/str.c
/petsc/src/vec/vec/examples/tutorials/ex21.c
/petsc/src/vec/vscat/interface/vscreate.c
047959ed24-Jun-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/balay/fix-ibm-xl-compilers/maint' into maint


config/compilers.py
/petsc/config/PETSc/Configure.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscsys.h
/petsc/lib/petsc/bin/maint/buildtest
/petsc/src/dm/examples/tutorials/ex11f90.F90
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex6f.F90
/petsc/src/mat/impls/mffd/ftn-custom/zmffdf.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/str.c
/petsc/src/vec/vec/examples/tutorials/ex21.c
e00c3ffc21-Jun-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


config/package.py
config/packages/hdf5.py
config/packages/sowing.py
/petsc/include/petscdmtypes.h
/petsc/lib/petsc/bin/maint/confignightly/cg2
/petsc/lib/petsc/bin/maint/confignightly/si
/petsc/lib/petsc/bin/maint/confignightly/si2
/petsc/lib/petsc/bin/maint/confignightly/si3
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/mat/impls/mffd/ftn-custom/zmffdf.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/sys/utils/str.c
62f3ae9121-Jun-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/balay/update-hdf5-url/maint' into maint


config/packages/hdf5.py

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