| 6cb73b5d | 21-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
szlib: add as odeps to hdf5
Requested-by: "Hammond, Glenn E" <gehammo@sandia.gov> |
| 0f30db69 | 21-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
hdf5: switch to installing with dinclude and dlib [and avoid manually constructing CPPFLAGS, LIBS]
This fixes bug introduced in previous commit with enclosing mathlib inside zlib ifblock |
| e811410f | 21-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
hdf5: switch zlib from 'deps' to 'odeps'
Reported-by: "Hammond, Glenn E" <gehammo@sandia.gov> |
| 715d1184 | 19-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
sowing: update to version with fixes for 'nroff' verbatim notation |
| b3d9c000 | 17-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint' |
| 9d37c360 | 17-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/jed/pkgconfig' into maint |
| b0569431 | 17-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/balay/disable-ssh-hwloc-bydefault' |
| 5fb5ff7b | 17-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Merge remote-tracking branch 'origin/balay/add-cxx-f-math-z-libs-deps' |
| 282c4f1c | 17-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Configure: Bump Pragmatic version |
| 851d29aa | 15-Mar-2017 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stag
Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new
* knepley/fix-plex-example-logging: (151 commits)
Plex ex12: Added logging stages
Plex ex1: Added logging stages
update to latest hypre tag on github
fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19
MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS.
replace use/mention of depreciated -log_summary in many places
add extchem.py which was written years ago but never put in the distribution (hence it is broken).
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes
Minor fixes for tchem examples due to changes in PETSc infrastructure
update webpage about API changes
add help menu for MatCreateSubMatricesMPI()
PetscCMPLX: assume type punning is safe
rename struct Mat_SubMat -> Mat_SubSppt
add a little information to the manual about using tchem
rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual
need to protect the \ passed on the makefile on my Mac
Bib: Updated ref
update src/mat/examples/tests/output/ex23_#.out
rename MatGetSubMat -> MatCreateSubMat
Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES
...
Conflicts:
src/dm/impls/plex/examples/tests/ex12.c
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|
| 1830d94e | 15-Mar-2017 |
Barry Smith <bsmith@mcs.anl.gov> |
update to latest hypre tag on github
Funded-by: IDEAS
Project: IDEAS/xSDK
Reported-by: Ulrike Meier Yang <yang11@llnl.gov> |
| b1a05755 | 13-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
ssl,hlwoc: disable by default |
| 37371b91 | 09-Mar-2017 |
Jed Brown <jed@jedbrown.org> |
pkgconfig: exclude rpath flags from PETSc.pc |
| cd2623fa | 09-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes |
| 02aea571 | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: update BlasLapack check
- add in mathlib as dependency (along with flibs)
- use dependencies [flibs, mathlib] via self.deps (intermediate value) - and remove useCompatibilityLibs
- update
configure: update BlasLapack check
- add in mathlib as dependency (along with flibs)
- use dependencies [flibs, mathlib] via self.deps (intermediate value) - and remove useCompatibilityLibs
- update self.deps appropriately in configureLibrary() - similar to package.py
- remove self.libraries.math and libm.a usage in generateGueses() - as they should be picked up via self.deps/self.dlib
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|
| f5159d04 | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
Trilinos: since hdf5 needs explicit dependency on zlib - add this via dlibs
Perhaps these extra dependencies [that are not set via package option to Trilinos]
should automatically computed - and lis
Trilinos: since hdf5 needs explicit dependency on zlib - add this via dlibs
Perhaps these extra dependencies [that are not set via package option to Trilinos]
should automatically computed - and listed be set via 'Trilinos_EXTRA_LINK_FLAGS'?
[this issue comes up with static buid - arch-linux-xsdk-dbg]
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|
| 0f1c24f5 | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
libpng: switch to using self.dinclude/self.dlib |
| 40625fb2 | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: move call to checkDependencies() from configureLibrary() to configure()
And setup dlib/dinclude -in 2 steps - first compute external deps in checkDependencies()
and later add in self.libs
configure: move call to checkDependencies() from configureLibrary() to configure()
And setup dlib/dinclude -in 2 steps - first compute external deps in checkDependencies()
and later add in self.libs [as before - in configureLibrary].
Perhaps this should be switched to - not include self.libs or store it seprately [self.dlib_only?]
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|
| 71453a4e | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: merge GNUPackage.checkDependencies() into Package.checkDependencies()
Also fix a bug this change brings up. hwloc is autoenabled with lookforbydefault=1.
Its an 'odep' for Trilinos. If no
configure: merge GNUPackage.checkDependencies() into Package.checkDependencies()
Also fix a bug this change brings up. hwloc is autoenabled with lookforbydefault=1.
Its an 'odep' for Trilinos. If not found (due to autodetect) --with-hwloc is reset to 0
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|
| 90234faa | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: redo package 'dlib' detection by constructing the dependency graph - and sorting it |
| 827589ae | 08-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
blaslapack: add dependency on flibs |
| 6317959e | 07-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
packages: switch from using self.libraries.math to self.flibs.lib etc.. |
| 3e5af2bd | 06-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: replace checkCompression()/needsCompression with a packagefile for zlib that supports --download-zlib (and proper dependencies) |
| f5f24835 | 06-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: add mathlib.py as a wrapper over self.libraries.math - this way this dependency is handled correctly |
| 7f32e07e | 03-Mar-2017 |
Satish Balay <balay@mcs.anl.gov> |
configure: add flibs.py as a wrapper over self.compilers.flibs - this way this dependency is handled correctly |