Changed Trilinos and xSDKTrilinos hyperlinks to the release version tags and tarballs.

Funded-by: IDEAS
Project: xSDK
Reported-by: James M. Willenbring <jmwille@sandia.gov>

Work around two bugs in Trilinos.

1) Seacas does not handle netcdf and hdf5 libraries so they are listed in the wrong order
for static libraries

2) Seacas tries to use X11 by default, this fails on

Work around two bugs in Trilinos.

1) Seacas does not handle netcdf and hdf5 libraries so they are listed in the wrong order
for static libraries

2) Seacas tries to use X11 by default, this fails on the cray with static libraries since
it appears Seacas tries to link against -lX11 for .a file which is totally wrong.

Funded-by: IDEAS
Project: xSDK
Time: 1 hour

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It should print the actual name of the file generated, as is
done two lines later instead of reconfig.py

Funded-by: IDEAS
Project: xSDK
Reported-by: Jason Sarich <sarich@mcs.anl.gov>

Update alquimia download to updated tag and added tarball location

Funded-by: IDEAS
Project: xSDK
Reported-by: Jeffrey Johnson <jnjohnson@lbl.gov>

Merge remote-tracking branch 'origin/balay/git-externalpackage-update'

Merge branch 'master' of bitbucket.org:petsc/petsc

Updates to properly allow ml, zoltan, and exodusii to come from their
individual package installers or the large trilinos install and
update mstk.py to utilize either set

Funded-by: IDEAS
Project: x

Updates to properly allow ml, zoltan, and exodusii to come from their
individual package installers or the large trilinos install and
update mstk.py to utilize either set

Funded-by: IDEAS
Project: xSDK
Reported-by: David J. Moulton <moulton@lanl.gov>

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Since xSDKInstaller.sh is run from a different directory than PETSc we
should indicate the location of the automatically generated batch submission files
when telling the user to submit them. Because

Since xSDKInstaller.sh is run from a different directory than PETSc we
should indicate the location of the automatically generated batch submission files
when telling the user to submit them. Because they may not be in the current directory

Funded-by: IDEAS
Project: xSDK
Reported-by: Alicia Marie Klinvex <amklinv@sandia.gov>

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fix problem with downloading sowing in batch mode introduced
by support added for allowing --download-xxx and --with-batch

Funded-by: IDEAS
Project: xSDK

MUMPS: Metis/Parmetis/PTScotch are optional even for parallel build. So remove the error report.
And setup metis serparately from parmetis. And also use odeps

Reported-by: Natacha BEREUX <natacha.be

MUMPS: Metis/Parmetis/PTScotch are optional even for parallel build. So remove the error report.
And setup metis serparately from parmetis. And also use odeps

Reported-by: Natacha BEREUX <natacha.bereux@gmail.com>
Clarified-by: Alfredo Buttari <alfredo.buttari@enseeiht.fr>

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Attempt to fix --with-batch to work reasonably with --download-xxx

configure: fix bug with known-sizeof-void-p in petsc4py and mpi4py checks

Merge branch 'jose/veccuda-complex'

jose/veccuda-complex:
Adds/reenables complex arithmetic for VECCUDA.

configure: use gitrepo for metis/parmetis

Update xSDKTrilinos.py to use -DTPL_PETSC_LIBRARIES so that we may pass
in the correct prefix or nonprefix path plus one or multiple libraries
plus any external package libraries that are not used by

Update xSDKTrilinos.py to use -DTPL_PETSC_LIBRARIES so that we may pass
in the correct prefix or nonprefix path plus one or multiple libraries
plus any external package libraries that are not used by Trilinos

Funded-by: IDEAS
Project: xSDK
Time: 1 hours

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Swithc to using ';'.join() for passing include directories to Trilinos

Funded-by: IDEAS
Project: xSDK
Thanks-to: Satish Balay <balay@mcs.anl.gov>

Trilinos needs to be compiled with hypre for xSDKTrilinos to work; this is definitely a bug

Funded-by: IDEAS
Project: xSDK
Time: .1 hour

Merge branch 'master' into barry/fix-xsdktrilinos

Removed hypre from Trilinos.py since now handled in xSDKTrilinos.py

Merge in Jason's configure fixes for SuperLU_Dist.py and Exodusii.py

Merge branch 'sarich/fix-xsdk-packages' into barry/fix-xsdktrilinos

Fix several bugs in Trilinos.py pointed out by Ross
Fix issues in xSDKTrilinos.py to make it work with static libraries

Funded-by: IDEAS
Project: xSDK
Time: 3 hours
Reported-by: Roscoe A. Bartlett

Fix several bugs in Trilinos.py pointed out by Ross
Fix issues in xSDKTrilinos.py to make it work with static libraries

Funded-by: IDEAS
Project: xSDK
Time: 3 hours
Reported-by: Roscoe A. Bartlett <rabartl@sandia.gov>
Thanks-to: Satish Balay <balay@mcs.anl.gov>

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configure: add in package.dinclude [similar to package.dlib]
Use them in Trilinos.py for PARMETIS [and dependencies]

fix missing 'quote' that breaks configure

When passing ParMetis information we have to pass metis information also
of course, how could I have missed this

Funded-by: IDEAS
Project: xSDK
Reported-by: Roscoe A Bartlett <rabartl@sandia.gov>

cmake: fix ctest detection with --download-cmake

Funded-by: IDEAS