Merge remote-tracking branch 'origin/knepley/feature-plex-add-time' into tisaac/dmforestBoth branches changeds DM projection behavior, so I wanted to sort itout before merging* origin/knepley/fe
Merge remote-tracking branch 'origin/knepley/feature-plex-add-time' into tisaac/dmforestBoth branches changeds DM projection behavior, so I wanted to sort itout before merging* origin/knepley/feature-plex-add-time: (59 commits) SNES ex69: Updated to new function API, fixed test output SNES ex75: Fixed for new function API add fortran stub for TSMonitorLGSetTransform() and fix TSMonitorLG for multiple fields but no names provided for fields add -binary_write_double so __float128 precision can save as double to binary files TSClone() did not clone Fortran function pointers hence some TS methods would fail if functions provided in Fortan petsc4py: update to snapshot with 'barry/petscoptions-object' changes fix bad merge that introduced 2 copies of the MPI_Comm_free() update example to use MAT_INPLACE_MATRIX, not REUSE incorrect addition of float to PetscInt update for new PetscOptions API TS ex18: Fixed function API and test output Function now takes PetscOptions as first argument, this was missed during the first round of updates bugfix for MatSetOption_Elemental() fix test example no change output that was missing a line fixes for new PetscOptions.. API that are needed based on problems with nightly build Plex ex3: Use new function API SNES ex62: Use new function API SNES ex12: Use new function API Plex: Fixed unused options in examples Plex+DMDA: Add time to signatures ...
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Merge branch 'balay/update-mpich-3.2'
fix: 620d467- split checkDownload and move only download_cygwin part to configure()Fixes build error on windows with MS compilers.
update to latest MPICH since early one won't compile on El Capitan
refactor two level framework; add second revolve object
configure: add a few checks for missing Lapack subroutines
generate errors for ctetgen build options it does not support
superlu: disable build with freebsd-make
configure: update c99 test to use FLT_ROUNDS from float.h [for superlu]As this test fails on OSX/PGI - disable the superlu/superlu_dist builds.
superlu: now also requires c99 & gnu-make
fixup petsc4py merge from maint
Merge branch 'maint'
petsc4py: --download-petsc4py works on cygwin [with static libraries]
MUMPS: update to version 5.0.1
superlu_dist: update to version 4.2
superlu: add in giturl
superlu: update tarball to 5.0 and fix build issue with/sandbox/hzhang/petsc/arch-linux-gcc-gfortran/lib/libpetsc.so: undefined reference to `smach'/sandbox/hzhang/petsc/arch-linux-gcc-gfortran/lib
superlu: update tarball to 5.0 and fix build issue with/sandbox/hzhang/petsc/arch-linux-gcc-gfortran/lib/libpetsc.so: undefined reference to `smach'/sandbox/hzhang/petsc/arch-linux-gcc-gfortran/lib/libpetsc.so: undefined reference to `dmach'/sandbox/hzhang/petsc/arch-linux-gcc-gfortran/lib/libpetsc.so: undefined reference to `dlacon2_'
mpich: move cygwin download check from checkDownload() to configure()[as --download-mpich=url option is processed in package.py.configure()]
mpich: update version to mpich-3.2
petsc4py: update to snapshot with 'barry/petscoptions-object' changes
Merge branch 'tisaac/dm-label-promote' into tisaac/dmforest* tisaac/dm-label-promote: (319 commits) snes tutorial ex69: give mesh a name for regression purposes DM: make DMLabel labels a part o
Merge branch 'tisaac/dm-label-promote' into tisaac/dmforest* tisaac/dm-label-promote: (319 commits) snes tutorial ex69: give mesh a name for regression purposes DM: make DMLabel labels a part of all DMs builder: update regression tests builder: update some missing package requirements DM: set coordinate vector name ts tutorials ex11_sa: make it compile mark variable as unused so compiler doesn't warn about unused value configure: use 'git cat-file -e' to check for existance of a commit in localrepo. ['git rev-parse' does not give error for a hash thats not in repo] petsc4py: revert to manually syncing petsc4py with petsc master changes configure: revert gitcommit default value to Null. If a pacakge using giturl does not change this value - raise an error fix: revert change in a44bcdf that breaks with pgf90 update test output for fixed to hypre interface that now actually pass the interp vectors to BoomerAMG Error message should say use negative threshold value to prevent filtering out zeros Calls to HYPRE_BoomerAMGSetInterpVectors() did not actually copy the vector data pointer from the PETSc vector to the hypre vector thus resulting in the hypre interp vectors being identically zero and hence not affecting the quality of the AMG hierarchy produced/ DMPlex: Silence overzealous compiler warnings add row/col orientation to MatConvert_Elemental_Dense fix formatting error in previous commit [broke nightlybuilds] fix formating of TSTHETA manual page and add missing command line option run hwloc with MPIEXEC and binding so it runs on the correct machine fix: memory leaks [in valgrind test] ...
Merge branch 'balay/configure-pkg-git-autoupdate'
configure: use 'git cat-file -e' to check for existance of a commit in localrepo.['git rev-parse' does not give error for a hash thats not in repo]
petsc4py: revert to manually syncing petsc4py with petsc master changes
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