Added a flag for the F90 module output directory

Hg-commit: b132fa62416a2c51b879a60bdc504fb995e020e6

update to latest hypre tarball hypre-2.6.0b.tar.gz

Hg-commit: 77f03c7b48ff9328253425c47fe4906013cd56e8

update to latest hdf5 tarball [hdf5-1.8.4.tar.gz]

Hg-commit: 4570694945121d2cda01d37e8c0d5fcef2bf806b

Merge

Hg-commit: 52d5c8c3e196361d5c4c5f4b6b71bf59b669a5fb

Possible fix for HDF5 problem

Hg-commit: bc314d06d10ac13092a1b835f09fdbeae3b4a245

added determination of HAVE_FORTRAN_GET_COMMAND_ARGUMENT and HAVE_FORTRAN_GETARG to be used by PFLOTRAN

Hg-commit: 38600eb7c003d472ecba893ea967a802b23056af

- switch to -with-single-library=1 default
- also fix sharedlibrary build for -with-single-library=1

Hg-commit: 9d9066f4fc5cfc2c3eaf1ef5bdda99b03549c543

cacheDetails.py: conftest stderr to /dev/null, fix caching of self.method

Hg-commit: 971fc4e02125959a39d83f8dc6613804b7232c01

python22 fix

Hg-commit: d6627d9d6a99a169ab75426b75eef8bd501bd2cb

Merge

Hg-commit: 877396bee467d11706fe4bd6e7dd710925967c05

Confgiure fix for Python 2.2

Hg-commit: 3f277ff3492ca2eb5ab4452726c92c64b16fdddb

fix syntax for python2.3

Hg-commit: cca5a4657ea12c12244d2d6752ba3ca2d1a9ddbf

cacheDetails.py: sanitize values set by conftest

* make sure these are in-range on the C-side so that failure to
auto-detect doesn't break configure
* turn candidate methods into a list so we iter

cacheDetails.py: sanitize values set by conftest

* make sure these are in-range on the C-side so that failure to
auto-detect doesn't break configure
* turn candidate methods into a list so we iterate in order
* insert missing stdio.h
* set upper bound to at most 2^31-1 to avoid possible overflow on C-side, we haven't hit 2GB caches yet

Hg-commit: 7990665390062fe48861df89d2b67ba1e4815b20

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removed with usage from cacheDetails.py since not python portable and put in str() for printing error messages.

Hg-commit: b555210d256663ef3fb1877b0f66d2f814bd8561

Add configure test for L1D details (size, linesize, assoc), may only autodetect when glibc is available (conservative defaults)

Hg-commit: 77a29daf0c75757fc4a2d6793cbcb78005dceef1

the argument to _mm_prefetch is const, so no need to cast it away

Hg-commit: 806d91ef8b1876becf0daca7783935b4de0465a9

update to using MUMPS_4.9.2.tar.gz

Hg-commit: cec5db6729c23bbdb9cc80092ac1dc4ccc7e9069

move '-with-shared=0' default setting to the correct location.

Hg-commit: 0263c5840cd0639614108ef2a00810072d1e2b95

pretty up reconfigure-PETSC_ARCH.py

Hg-commit: b37250c1e922a0fb7248c79def0a24e8bd6d889f

#40873 check and generate fortranstubs with --download-sowing=1

Hg-commit: 90555406a01c8234a11ea07b51f988a782f7ab9b

correcting of 0 assignments to double to be 0.

Hg-commit: 4e8d3c66ce68ac50361b8dc9292a6438842e1543

more fixes to mpack.py

Hg-commit: be7d6ff593a01c6155ef023bf4bac0f57e5482bf

added include file and library for mpack.py to test for

Hg-commit: 6817e613d61d1ed8e5282e11984f4403c119288b

stray $ before definition of LDFLAGS for mpack

Hg-commit: a99f338d68a4bd7bf1bd79006588d7c69ddb3c93

commit after merge

Hg-commit: 7639c6b69a2ad7fffa6b5640ba83f148f36af7eb