Add documentation for PetscUseTypeMethod() and PetscTryTypeMethod()

Commit-type: documentation

Convert setfromoptions methods over to PetscTryTypeMethod() approach

Flipped the order of the arguments for the function pointers (*setfromoptions)(PetscOptionItem*,obj); and friends to make them co

Convert setfromoptions methods over to PetscTryTypeMethod() approach

Flipped the order of the arguments for the function pointers (*setfromoptions)(PetscOptionItem*,obj); and friends to make them consistent with PetscTryTypeMethod() and all the other methods

Commit-type: refactorization
/spend 4h

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Merge branch 'barry/2022-08-14/update-thread-info-docs' into 'main'

Update the docs slightly in discussion of OpenMP.

See merge request petsc/petsc!5529

Update the docs slightly in discussion of OpenMP.

Remove completely the bash OpenMP material and clarifiy and add a bit to the users manual on how OpenMP is
used and can be used in PETSc.

Commit-ty

Update the docs slightly in discussion of OpenMP.

Remove completely the bash OpenMP material and clarifiy and add a bit to the users manual on how OpenMP is
used and can be used in PETSc.

Commit-type: documentation
/spend 10m

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Cleanup clarification for DMPlex chapter of users manual

I changed a figure in docs/images but could not generate the .svg version
Could someone please read the latest commit message in that reposit

Cleanup clarification for DMPlex chapter of users manual

I changed a figure in docs/images but could not generate the .svg version
Could someone please read the latest commit message in that repository and upate the
.svg file? Thanks

Commit-type: documentation
/spend 1h

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Merge branch 'barry/2022-08-09/fix-manualpage-rot' into 'main'

Stop make allmanpages if an error is detected. Otherwise errors are hidden and never fixed.

See merge request petsc/petsc!5510

fix mixture of all caps and not all caps for SUBMANSEC for DMPLEX and friends

Commit-type: bug-fix, documentation
/spend 50m

Merge branch 'markadams4-release-patch-37214' into 'main'

Update profiling.rst: add doc entry for Nsight Systems profiling

See merge request petsc/petsc!5302

Update profiling.rst: add doc entry for Nsight Systems profiling

add CUDA nvtx to events logs

Document proper spacing in comments

Document /*J for constructing manual pages

Merge branch 'barry/2022-07-20/add-clang-format' into 'main'

Use clang-format to format PETSc source code

See merge request petsc/petsc!5455

context - wrap context in PetscContainer, add user context destroy routines for MatShell, DMSNES/DMTS function and jacobian

Run clang-format on examples that are included in manual with start-at and update the manual so it will find the find reformated source c

Note the use of // clang-format off to prevent clang from ta

Run clang-format on examples that are included in manual with start-at and update the manual so it will find the find reformated source c

Note the use of // clang-format off to prevent clang from taking in the entire try {} and turning it into a single unreadable line of code

/spend 15m

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Mild cleanup of material on website, specifically the introduction and organization of manual

Split DM material into its own "part" in the manual and start to add introductory general DM information

Mild cleanup of material on website, specifically the introduction and organization of manual

Split DM material into its own "part" in the manual and start to add introductory general DM information

Commit-type: documentation
/spend 3.5h

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Fix checklinks to work in virtual environment

This rule is useless spews out tons of useless garbage so one cannot see the few important violations that go to PETSc examples


Commit-type: docs

Merge branch 'psanan/docs-man-page-index-columns' into 'main'

Docs: use multiple columns for man pages index pages

See merge request petsc/petsc!5224

vec add VecStrideSum and VecStrideSumAll interfaces + CPU impl

Docs: Remove "on this page" from right sidebar

This prevents it from getting in the way of overflowing
content in the main column.

This is a kludge and I don't personally like it. It removes
a stan

Docs: Remove "on this page" from right sidebar

This prevents it from getting in the way of overflowing
content in the main column.

This is a kludge and I don't personally like it. It removes
a standard feature of the theme which people might expect,
and it compromises all pages for the sake a of a couple which
have their own hack.

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Merge branch 'release'

Increase patchlevel to 3.17.4

Remove out-dated, wrong and embarrassing material from users manual

Commit-type: documentation
/spend 5m

Merge remote-tracking branch 'origin/release'

Update doc/petsc.bib

Merge branch 'barry/2022-07-16/fix-mattranspose' into 'main'

Symbolic/numeric stages vs MatReuse flag discussion and additions to MatTranspose

See merge request petsc/petsc!5438