Remove the view of object memory in -log_view since it is usually very wrong !3143

Also add comments in the code where object memory information is stored and collecting indicating
for developers it

Remove the view of object memory in -log_view since it is usually very wrong !3143

Also add comments in the code where object memory information is stored and collecting indicating
for developers it is unreliable. We cannot rely on developer's personal memory for this type of knowledge.

Commit-type: bug-fix, housekeeping
/spend 15m
Reported-by: Patrick Sanan <patrick.sanan@gmail.com>

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Replace MatUpdateMPIAIJWithArrays() with more memory efficient MatUpdateMPIAIJWithArray()

Commit-type: optimization
/spend 1h

Merge branch 'barry/2022-06-27/docs-snesvi-domainerror' into 'main'

Improve manual pages and manual for SNES problems with domain errors or box constraints

See merge request petsc/petsc!5373

Improve manual pages and manual for SNES problems with domain errors or box constraints

Commit-type: docs
/spend 10m
Reported-by: Jacob Simon Merson <mersoj2@rpi.edu>

Merge branch 'wence/petsc-check-do-while' into 'main'

Wrap PetscCheck and PetscAssert in do { } while (0)

Closes #1199

See merge request petsc/petsc!5291

Merge branch 'release'

Increase patchlevel to 3.17.3

Merge branch 'knepley/feature-plex-periodic-separation' into 'main'

Fix periodicity for higher order coordinates

See merge request petsc/petsc!5333

Merge branch 'barry/2022-06-01/update-manual-vector-chapter' into 'main'

Updates for vector chapter of manual

See merge request petsc/petsc!5307

DM+FE: Create DG coordinate DS and add PetscFECreateFromSpaces()
- Refactor FE creation
- Create DS for DG coordinates
- Error on DG face coordinates

DM: Reorganized periodic coordinates into a separate representation
- Split coordinates into two representations
- No longer specify the boundary type for periodicity. We can tell if a
given boundary

DM: Reorganized periodic coordinates into a separate representation
- Split coordinates into two representations
- No longer specify the boundary type for periodicity. We can tell if a
given boundary is periodic by a positive L[d]
- Added DMPlexGetCellCoordinates_Internal() to get localized cell
coordinates automatically, and used in plexgeometry.c
- Moved coordinate functions into dmcoordinates.c
- Moved periodicity functions into dmperiodicity.c

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added distance k MIS MatCoarsen type

Move create and filter graph from PCGAMG to AMTAIJ

Flag PetscCheck/PetscAssert change in changelog

Provide more documentation on matrix layout meaning
and where matrix entries are stored across ranks (Elemental, SCALAPACK)

Commit-type: docs
/spend 1.5h

Merge branch 'hzhang/external-matfactor-options' into 'main'

Get options in symbolic factorization instead of MatGetFactor() using KSP/PC prefix when inside KSP

See merge request petsc/petsc!5230

Plex: Allow a user to create a custom parallel overlap using labels - The test is in PyLith

Merge branch 'ksagiyam/dmplex_reorder_1d_options' into 'main'

plex: add DMPlexReorder{Set,Get}Default()

See merge request petsc/petsc!5245

Change matrix factor database options that occur in KSP/PC to always use KSP/PC options prefix

Add MatSetOptionsPrefixFactor() and MatAppendOptionsPrefixFactor() to allow controlling the options pre

Change matrix factor database options that occur in KSP/PC to always use KSP/PC options prefix

Add MatSetOptionsPrefixFactor() and MatAppendOptionsPrefixFactor() to allow controlling the options prefix
used by factors created from this matrix

Change MatSetOptionsPrefix() to no longer affect the options prefix used by factors created from this matrix

As part of the above work the handling of the factor matrix options is now done in code in the factor matrix
not in the code that originates the factor matrix

Update examples output to the new approach where the factored matrix prefix is set from the KSP/PC

Much of this work was performed by Hong Zhang

Commit-type: usability
/spend 5h

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plexreorder: add DMPlexReorder{Set,Get}Default()

Doctext should create a new paragraph on paragraph break in the docstring

Updates for vector chapter of manual

Add more discussion of GPUs
Add more example fragments
Copyedits

Commit-type: docs
/spend 2h

Add rule to manage the Python environment etc for building PETSc docs

automatically to allow builing the docs with a single command.

Commit-type: docs
/spend 5m

MatDenseGetSubMatrix(): allow selection of rows

Merge branch 'barry/2022-06-09/add-clear-names-no-ksp-linesearch' into 'main'

Add KSPNONE as alias for KSPPREONLY and SNESLINESEARCHNONE for SNESLINESEARCHBASIC

See merge request petsc/petsc!5326