Docs: remove old entry from doc/.gitignore

Doc: TAO Manual: add missing section labels

Docs: update citation with newly-capitalized name

Docs: Consolidate .bib files

Combine all BibTeX files into a single petsc.bib in the doc root.

Tag all entries from petscapp.bib (things which use PETSc) by
adding a field

petsc_uses={KSP}

This

Docs: Consolidate .bib files

Combine all BibTeX files into a single petsc.bib in the doc root.

Tag all entries from petscapp.bib (things which use PETSc) by
adding a field

petsc_uses={KSP}

This assumes that KSP is the (only) component being used, which is not
accurate. This field can be refined later if desired to more accurately
keep track of references which use various components.

Untag the things used in the PETSc citations.

Add some brief instructions to the top of the file.

Leave most interstitial comments.

Remove duplicate entries.

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Merge branch 'jwallwork23/metric-utils-api' into 'main'

Public API for Riemannian metric

See merge request petsc/petsc!4408

Merge remote-tracking branch 'origin/release'

Merge branch 'psanan/docs-reduce-bib-duplication' into 'release'

Docs: include directly from .bib files for PETSc citation info

See merge request petsc/petsc!4412

docs changes: metric utils public API

Merge branch 'psanan/2021-10-05/docs-warnings' into 'release'

Docs: resolve Sphinx warnings

See merge request petsc/petsc!4411

Docs: include directly from .bib files for PETSc citation info

For the users manual and web page, update the .bib files to have
a matching author's list to the information that was hard coded on the

Docs: include directly from .bib files for PETSc citation info

For the users manual and web page, update the .bib files to have
a matching author's list to the information that was hard coded on the
front page.

Add a more recent ArXiV version for TS paper.

Attempt to make formatting more uniform.

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Docs: move BibTeX files to doc/ tree

Docs: resolve Sphinx warnings

Makes fe.rst and guide_to_TAS.rst visible in the tables of contents

ISLocalToGlobalMappingCreateSF: allow start = PETSC_DECIDE

docs: remove team table auto-generation logic

Docs: Use sphinx-panels for team table

Use the sphinx-panels extension (which has CSS flexbox under the hood)
instead of custom CSS and auto-generation for team table.

Images are used in the normal

Docs: Use sphinx-panels for team table

Use the sphinx-panels extension (which has CSS flexbox under the hood)
instead of custom CSS and auto-generation for team table.

Images are used in the normal way for Sphinx (so should work with all
builders including html and dirhtml). Images are a mix of external
links and images in the PETSc images repo.

Uses hard-coded links to GitLab avatars, which were obtained with the
generate_team_table.py script.

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Merge branch 'knepley/feature-plex-extrude-symmetric' into 'main'

Plex: DMPlexExtrude() can now symmetrically extrude

See merge request petsc/petsc!4367

DMCopyLabels: add DMCopyLabelsMode arg determining duplicity handling;

+ manpage fixes

add DMLabelCompare,DMCompareLabels

add DMLabelGetNonEmptyStratumValuesIS()

DM: Now extrusion is like DMRefine() and implemented through DMPlexTransform - DMExtrude() replaces DMPlexExtrude() - Added an extrusion transformation - Added DMPlexTransformSetDimensions() and setd

DM: Now extrusion is like DMRefine() and implemented through DMPlexTransform - DMExtrude() replaces DMPlexExtrude() - Added an extrusion transformation - Added DMPlexTransformSetDimensions() and setdimensions function - DMPlexTransformMapCoordinates() and DMPlexSnapToGeomModel() now take the coordinate dimension - -dm_extrude replaces -dm_plex_extrude_layers

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Merge remote-tracking branch 'origin/release'

Merge branch 'jacobf/2021-09-30/team-table-hotfix/release' into 'release'

Team table hotfix

See merge request petsc/petsc!4389

update tables

doc: fix missing URL to changes/316

revert sources to dev
- reset PETSC_VERSION_RELEASE
- reset doc/docs/changes/dev.rst