Merge remote-tracking branch 'origin/release'

Docs: classic html target: create single composite command, using unique temporary file for htmlmap

This is intended to avoid issues when more than one docs build is proceeding on the same system.

html: fix code format

Configure: we should use HIPPPFLAGS provided by the user

Flags handling is currently a mess

Merge branch 'connorjward/fix-flamegraph-output' into 'main'

Fix bugs in flame graph output

See merge request petsc/petsc!3937

checkbadSource: fix bug with incorrect line count

Fix xml2flamegraph.py script

Previously this script would output the time spent in both the function
and its callees. For flame graphs this is wrong. Now we use the 'self'
time from the XML to do th

Fix xml2flamegraph.py script

Previously this script would output the time spent in both the function
and its callees. For flame graphs this is wrong. Now we use the 'self'
time from the XML to do things properly.

Update xml2flamegraph.py to accomodate 'other-timed' parts

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Various fixes for NVIDIA's nvhpc toolkit

The nvhpc systems separates the CUDA math libaries and includes from the regular CUDA material
thus cuda.py has to detect and manage this separation automati

Various fixes for NVIDIA's nvhpc toolkit

The nvhpc systems separates the CUDA math libaries and includes from the regular CUDA material
thus cuda.py has to detect and manage this separation automatically.

Note also the nvhpc includes the MPI compilers in another directory which should be used with MPI.

Do not use outer C++ compiler as Kokkos compiler as that may not match the compiler used by nvcc, instead use the C++ compiler that nvcc uses. This is tricky because this compiler has to have access to the MPI headers since it sees all of the PETSc headers.

/spend 14h

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checkbadSource now detects double blank lines

Commit-type: error-checking, style
/spend 3h

Merge branch 'release'

Provide link on each manual page to edit the manual page for typos and errors

\spend 1.5h

Merge branch 'jacobf/2021-05-17/minor-linter-fixups' into 'main'

Minor Linter Fixups

See merge request petsc/petsc!3990

spin the root process until all of its children exit and move the subprocess version checks into helper function

move petscrandom headers to include/petsc/private

Linter using libClang that checks PetscValidHeaderSpecifcType, PetscValidHeaderSpecific, PetscValidHeader, PetscValid[XXX]Pointer, PetscValidType, PetscCheckSameComm, PetscValidLogicalCollectiveXXX f

Linter using libClang that checks PetscValidHeaderSpecifcType, PetscValidHeaderSpecific, PetscValidHeader, PetscValid[XXX]Pointer, PetscValidType, PetscCheckSameComm, PetscValidLogicalCollectiveXXX for validity. Automatically generates diff files for problems with a known solution.

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Merge remote-tracking branch 'origin/release'

Docs: update path for countpetsccits.py

Merge remote-tracking branch 'origin/release'

Docs: update classic docs links to man page index for Sphinx docs dirhtml location

Merge branch 'psanan/docs-fix-html-latexinexamples' into 'release'

Docs: fix missing build location for LaTeX step in HTML pages

See merge request petsc/petsc!3951

Docs: fix missing build location for LaTeX step in HTML pages

Add a missing $${loc} which was causing errors with classic docs builds where
$LOC was not equal to $PETSC_DIR (hence the expected .html

Docs: fix missing build location for LaTeX step in HTML pages

Add a missing $${loc} which was causing errors with classic docs builds where
$LOC was not equal to $PETSC_DIR (hence the expected .html file is
not in the source tree, which presumably allowed this step to suceed before).

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generatefortranstubs.py: avoid split() argument that is not available in Python 2.6

Fixes issue #905
Thanks-To: Jacob Faibussowitsch

Config: compile *.kokkos.cxx with nvcc flags if enabled

Merge remote-tracking branch 'origin/release'

generatefortranstubs.py: reduce the length of basename of temporary files

Prevents python error 'File name too long'