Merge branch 'maint'

Merge branch 'balay/fix-opensolaris-linker-scope-warnings/maint' into maint

Merge branch 'maint'

dashboard: flag example errors of type:

/Users/petsc/petsc.next-3/src/vec/vscat/examples/ex4.c:72:9: error: cannot convert 'const PetscScalar' (aka 'const complex<double>') to 'PetscInt' (aka 'int')

dashboard: flag example errors of type:

/Users/petsc/petsc.next-3/src/vec/vscat/examples/ex4.c:72:9: error: cannot convert 'const PetscScalar' (aka 'const complex<double>') to 'PetscInt' (aka 'int') without a conversion operator

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opensolaris: fix warnings of type:
"/export/home/petsc/petsc.master-3/include/petscsys.h", line 3046: warning: linker scope was specified more than once: "PETSC_MPI_ERROR_CODE"

Alternate fix: --with

opensolaris: fix warnings of type:
"/export/home/petsc/petsc.master-3/include/petscsys.h", line 3046: warning: linker scope was specified more than once: "PETSC_MPI_ERROR_CODE"

Alternate fix: --with-visibility=0

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Merge branch 'maint'

Merge remote-tracking branch 'origin/balay/update-make-l/maint' into maint

Merge branch 'maint'

tests: reorganize

- move some gpu tests to frog
- re-enable valgrind test on es
- add gcc/avx2 test on knl

tests: attempt to speedup builds/tests by using MAKE_LOAD [set higher than NPMAX]
- add --with-make-load configure option for user override
- increase make_test_np factor from .35 to .5

dashboard: flag more warnings [cl]

remove references to $PETSC_DIR/bin/portabilitycheck.py

examples: add compile target 'ex%: ex%.o' etc - and remove the corresponding dups

test: fix CXX examples target to correctly set and use CXXLINKER [and not rely on CXX]

Fixes nightlybuild warnings for osx-10.6-cxx-pkgs-opt_ipro:


ld: warning: could not create compact unwind for

test: fix CXX examples target to correctly set and use CXXLINKER [and not rely on CXX]

Fixes nightlybuild warnings for osx-10.6-cxx-pkgs-opt_ipro:


ld: warning: could not create compact unwind for ___cmumps_parallel_analysis_MOD_cmumps_parsymfact: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for ___cmumps_parallel_analysis_MOD_cmumps_ana_f_par: stack subq instruction is too different from dwarf stack size

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dahsboard: update to flag 'compile warnings' in examples.log

Merge branch 'master' into knepley/feature-error-logging

* master: (221 commits)
dashboard: count and list example compile failures like:
fix fix-pr879-jczhang-optimize-vecscatter-multi-copy
a

Merge branch 'master' into knepley/feature-error-logging

* master: (221 commits)
dashboard: count and list example compile failures like:
fix fix-pr879-jczhang-optimize-vecscatter-multi-copy
add manual page cross links for SNESLineSearchSetPostCheck() and related routines
fix help manual of MatCreateSubmatrices() Reported-by: Tim Steinhoff <kandanovian@gmail.com>
Add manual pages for PetscRealPart() and PetscImaginaryPart()
fix compile error with missing MPI_C_DOBULE_COMPLEX
fix typo Reported-by: Febrian Setianto <febrian.setianto@gmail.com>
plex tutorial ex5: updated test requirements
DMPlexLoad_HDF5_Xdmf_Internal: fix for complex PetscScalar.
DMPlexLoad_HDF5_Xdmf_Internal: fix for 64-bit PetscInt.
DMPlexBuildFromCellList_Internal: use DMPlexInvertCell_Internal (with PetscInt* arg)
petscviewer.h: removed notice which is no longer relevant
DMPlexCreateFromFile: document option
check only if PETSC_USE_DEBUG
DMPlexBuildFromCellList_Internal optionally inverts cells.
ex5: new test 4 with -compare without repartitioning
ex5: new test 3 using -compare
ex5: HDF5 write+read moved to separate function
ex5: option -format processed in ProcessOptions()
ex5: added missing hdf5 requirement
...

Conflicts:
include/petsclog.h

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dashboard: count and list example compile failures like:

/sandbox/petsc/petsc.next/arch-cuda-double/lib/libpetsc.so: undefined reference to `VecScatterLocalOptimizeCopy'
collect2: error: ld returned

dashboard: count and list example compile failures like:

/sandbox/petsc/petsc.next/arch-cuda-double/lib/libpetsc.so: undefined reference to `VecScatterLocalOptimizeCopy'
collect2: error: ld returned 1 exit status

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release: set v3.9 strings

Merge branch 'scott/test-harness-timing2'

Analysis: Added a script to process the new logging data

Updates for new location

make: limit parallel builds - when 'load' reaches max_cores on the machine

Merge remote-tracking branch 'origin/jed/futurize-stage-1'

Merge remote-tracking branch 'origin/psanan/doc-manimplementations-fix'

python: futurize stage 1 (modernize python-2 code)

This should have no behavioral change. It was generated by running

futurize -1 -nw config lib setup.py src systems

followed by reverting some

python: futurize stage 1 (modernize python-2 code)

This should have no behavioral change. It was generated by running

futurize -1 -nw config lib setup.py src systems

followed by reverting some "from . import" relative imports (PEP 328
without 366) and fixing up RDict.py __contains__ to not cause recursion.

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