Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of //faq.html since the automatic tool incorrectly replaced /faq.html to //faq.html in some locations

These are largely updates of http to https but have a variety of other website location changes

Once this branch is in master individual developers can run make checkbadURLS and fix URLs related to their projects manually

Commit-type: bug-fix, documentation

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Generate unique folder names for TSTrajectory

- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c

Funded-by:
Project: FASTMATH adjoint
Ti

Generate unique folder names for TSTrajectory

- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c

Funded-by:
Project: FASTMATH adjoint
Time: 6.5 hours
Reported-by:
Thanks-to:

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PetscDatatype of PETSC_INT was changed in the enum to value 16 but the Matlab
PetscBagRead.m was not updated to reflect the new values

Commit-type: bug-fix
Reported-by: Richard Katz <richard.katz@ea

PetscDatatype of PETSC_INT was changed in the enum to value 16 but the Matlab
PetscBagRead.m was not updated to reflect the new values

Commit-type: bug-fix
Reported-by: Richard Katz <richard.katz@earth.ox.ac.uk>

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DMPlex: Update Gmsh reader

* Add some utility routines to reduce duplicated code
* Ignore $Comments sections, even before the $MeshFormat section.
Using $Comments sections is an official recommend

DMPlex: Update Gmsh reader

* Add some utility routines to reduce duplicated code
* Ignore $Comments sections, even before the $MeshFormat section.
Using $Comments sections is an official recommendation from Gmsh devs,
now we can support Gmsh meshes exported from Pointwise.

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Fix datafile permission 755 -> 644

Merge branch 'hongzh/improve-ex72-matrixmarket' [PR #1449]

* hongzh/improve-ex72-matrixmarket:
Improve ex72 to support more types in matrix market format

Add a test for MM skew matrix

DMPlex: Update reader for Gmsh v4.1 file format

DMPlex: Fix reader for Gmsh v4 format

- Entities are not numbered contiguously

Add a Matrix Market real symmetric matrix for testing

DMPlex: Add tests for Gmsh v2/v4 ascii/binary reader

Merge branch 'haplav/feature-mataij-load-from-hdf5' [PR #1232]

* haplav/feature-mataij-load-from-hdf5:
MatLoad() implementation for HDF5.
This PR done with cooperation with @Mari Pecha brings the HD

Merge branch 'haplav/feature-mataij-load-from-hdf5' [PR #1232]

* haplav/feature-mataij-load-from-hdf5:
MatLoad() implementation for HDF5.
This PR done with cooperation with @Mari Pecha brings the HDF5 matrix loader.
Its impact is twofold:
- It introduces a truly parallel reader where each rank reads its chunk of the matrix.
- It can directly read MATLAB's native MAT-file format (version 7.3) which is in fact an HDF5 flavor.

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update datafiles tiny_system_with_x0.mat tiny_system_with_x0_complex.mat

Remove old broken periodic meshes

Add new periodic tet meshes with GMSH

Merge branch 'master' into haplav/feature-mataij-load-from-hdf5

because I need the test loop fix

plex: Add test that provoked memory error in refinement