interface - OpenGrok history log for /petsc/src/dm/dt/interface/

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
497880ca	21-May-2018	Richard Tran Mills <rmills@rmills.org>	Change #if(n)def to #if (!)defined in all DM code. Commit-type: style-fix /petsc/.gitignore /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/combblas.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/config/utilities/debuggers.py /petsc/config/BuildSystem/docs/manual.xml /petsc/config/BuildSystem/help.py /petsc/config/BuildSystem/retrieval.py /petsc/config/BuildSystem/script.py 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95452b02	16-Apr-2018	Patrick Sanan <patrick.sanan@gmail.com>	Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( Man pages: add newlines after "Notes:" This allows for proper formatting from sowing. On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( -name ".c" -or -name ".h" -or -name ".cxx" \) \| xargs gsed -i 's/Notes\s:\s\(\w.\)/Notes:\n \1/' This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/ show more ... /petsc/include/petsc/private/petscimpl.h /petsc/include/petscdmtypes.h /petsc/include/petscdraw.h /petsc/include/petscerror.h /petsc/include/petscgll.h /petsc/include/petscis.h /petsc/include/petscksp.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscmatcoarsen.h /petsc/include/petscmath.h /petsc/include/petscoptions.h /petsc/include/petscpctypes.h /petsc/include/petscsf.h /petsc/include/petscsnes.h /petsc/include/petscsys.h /petsc/include/petsctao.h /petsc/include/petscts.h dt.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/da.c /petsc/src/dm/impls/da/dacorn.c /petsc/src/dm/impls/da/dagetarray.c /petsc/src/dm/impls/da/dagetelem.c /petsc/src/dm/impls/da/dagtol.c /petsc/src/dm/impls/da/daview.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/da/hypre/mhyp.c /petsc/src/dm/impls/forest/forest.c /petsc/src/dm/impls/moab/dmmbfield.cxx /petsc/src/dm/impls/moab/dmmbmat.cxx /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/impls/shell/dmshell.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/ksp/ksp/examples/tutorials/ex27.c /petsc/src/ksp/ksp/examples/tutorials/output/ex27_1.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_2.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3_nsize-1.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3_nsize-2.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3a_nsize-1.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3a_nsize-2.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3b_nsize-1.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_3b_nsize-2.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_4.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_4a_ksp_type-cgls.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_4a_ksp_type-lsqr.out /petsc/src/ksp/ksp/examples/tutorials/output/ex27_5.out /petsc/src/ksp/ksp/guess/impls/fischer/fischer.c /petsc/src/ksp/ksp/impls/bcgs/bcgs.c /petsc/src/ksp/ksp/impls/bcgs/fbcgs/fbcgs.c /petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c /petsc/src/ksp/ksp/impls/bcgs/pipebcgs/pipebcgs.c /petsc/src/ksp/ksp/impls/bicg/bicg.c /petsc/src/ksp/ksp/impls/cg/cg.c /petsc/src/ksp/ksp/impls/cg/cgls.c /petsc/src/ksp/ksp/impls/cg/cgne/cgne.c /petsc/src/ksp/ksp/impls/cg/gltr/gltr.c /petsc/src/ksp/ksp/impls/cg/nash/nash.c /petsc/src/ksp/ksp/impls/cg/stcg/stcg.c /petsc/src/ksp/ksp/impls/cgs/cgs.c /petsc/src/ksp/ksp/impls/cheby/cheby.c /petsc/src/ksp/ksp/impls/cr/cr.c /petsc/src/ksp/ksp/impls/fetidp/fetidp.c /petsc/src/ksp/ksp/impls/gcr/gcr.c /petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c /petsc/src/ksp/ksp/impls/gmres/borthog2.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c /petsc/src/ksp/ksp/impls/gmres/gmres.c /petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c /petsc/src/ksp/ksp/impls/gmres/pgmres/pgmres.c /petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c /petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c /petsc/src/ksp/ksp/impls/lcd/lcd.c /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/ksp/impls/minres/minres.c /petsc/src/ksp/ksp/impls/preonly/preonly.c /petsc/src/ksp/ksp/impls/qcg/qcg.c /petsc/src/ksp/ksp/impls/rich/rich.c /petsc/src/ksp/ksp/impls/rich/richscale.c /petsc/src/ksp/ksp/impls/symmlq/symmlq.c /petsc/src/ksp/ksp/impls/tcqmr/tcqmr.c /petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c /petsc/src/ksp/ksp/impls/tsirm/tsirm.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/ksp/pc/impls/bddc/bddc.c /petsc/src/ksp/pc/impls/bjacobi/bjacobi.c /petsc/src/ksp/pc/impls/composite/composite.c /petsc/src/ksp/pc/impls/cp/cp.c /petsc/src/ksp/pc/impls/eisens/eisen.c /petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c /petsc/src/ksp/pc/impls/factor/factor.c /petsc/src/ksp/pc/impls/factor/icc/icc.c /petsc/src/ksp/pc/impls/factor/ilu/ilu.c /petsc/src/ksp/pc/impls/factor/lu/lu.c /petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c /petsc/src/ksp/pc/impls/galerkin/galerkin.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/impls/gamg/util.c /petsc/src/ksp/pc/impls/gasm/gasm.c /petsc/src/ksp/pc/impls/hypre/hypre.c /petsc/src/ksp/pc/impls/is/nn/nn.c /petsc/src/ksp/pc/impls/jacobi/jacobi.c /petsc/src/ksp/pc/impls/kaczmarz/kaczmarz.c /petsc/src/ksp/pc/impls/ksp/pcksp.c /petsc/src/ksp/pc/impls/mat/pcmat.c /petsc/src/ksp/pc/impls/mg/mg.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/ksp/pc/impls/none/none.c /petsc/src/ksp/pc/impls/pbjacobi/pbjacobi.c /petsc/src/ksp/pc/impls/redistribute/redistribute.c /petsc/src/ksp/pc/impls/redundant/redundant.c /petsc/src/ksp/pc/impls/shell/shellpc.c /petsc/src/ksp/pc/impls/sor/sor.c /petsc/src/ksp/pc/impls/spai/ispai.c /petsc/src/ksp/pc/impls/tfs/tfs.c /petsc/src/ksp/pc/impls/wb/wb.c /petsc/src/ksp/pc/interface/pcset.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/coarsen/coarsen.c /petsc/src/mat/color/impls/jp/jp.c /petsc/src/mat/color/impls/minpack/color.c /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/impls/adj/mpi/mpiadj.c /petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/bas/spbas.c /petsc/src/mat/impls/aij/seq/inode.c /petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c /petsc/src/mat/impls/aij/seq/superlu/superlu.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/blockmat/seq/blockmat.c /petsc/src/mat/impls/composite/mcomposite.c /petsc/src/mat/impls/hypre/mhypre.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/impls/maij/maij.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/mffd/mffddef.c /petsc/src/mat/impls/mffd/wp.c /petsc/src/mat/impls/normal/normm.c /petsc/src/mat/impls/normal/normmh.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/impls/sell/mpi/mpisell.c /petsc/src/mat/impls/shell/shell.c /petsc/src/mat/impls/transpose/htransm.c /petsc/src/mat/impls/transpose/transm.c /petsc/src/mat/interface/matnull.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/matfd/fdmatrix.c /petsc/src/mat/partition/impls/chaco/chaco.c /petsc/src/mat/partition/impls/party/party.c /petsc/src/mat/partition/impls/pmetis/pmetis.c /petsc/src/mat/partition/impls/scotch/scotch.c /petsc/src/mat/partition/partition.c /petsc/src/mat/utils/axpy.c /petsc/src/mat/utils/compressedrow.c /petsc/src/mat/utils/getcolv.c /petsc/src/mat/utils/matstash.c /petsc/src/snes/examples/tutorials/ex1f.F90 /petsc/src/snes/impls/fas/fasfunc.c /petsc/src/snes/impls/ls/ls.c /petsc/src/snes/impls/multiblock/multiblock.c /petsc/src/snes/impls/nasm/aspin.c /petsc/src/snes/impls/nasm/nasm.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/impls/qn/qn.c /petsc/src/snes/impls/richardson/snesrichardson.c /petsc/src/snes/impls/shell/snesshell.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj2.c /petsc/src/snes/interface/snesut.c /petsc/src/snes/linesearch/impls/l2/linesearchl2.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/snes/mf/snesmfj.c /petsc/src/snes/utils/dmdasnes.c /petsc/src/sys/classes/bag/bag.c /petsc/src/sys/classes/draw/interface/dmouse.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/draw/interface/dsave.c /petsc/src/sys/classes/draw/interface/dtri.c /petsc/src/sys/classes/draw/utils/axisc.c /petsc/src/sys/classes/draw/utils/bars.c /petsc/src/sys/classes/draw/utils/dscatter.c /petsc/src/sys/classes/draw/utils/hists.c /petsc/src/sys/classes/draw/utils/lgc.c /petsc/src/sys/classes/gll/petscgll.c /petsc/src/sys/classes/random/impls/rander48/rander48.c /petsc/src/sys/classes/random/interface/random.c /petsc/src/sys/classes/random/interface/randomc.c /petsc/src/sys/classes/random/interface/randreg.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/sys/classes/viewer/impls/glvis/glvis.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c /petsc/src/sys/classes/viewer/impls/socket/matlab/bread.c /petsc/src/sys/classes/viewer/impls/socket/send.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c /petsc/src/sys/classes/viewer/interface/dupl.c /petsc/src/sys/classes/viewer/interface/view.c /petsc/src/sys/classes/viewer/interface/viewa.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/dll/dl.c /petsc/src/sys/error/adebug.c /petsc/src/sys/error/err.c /petsc/src/sys/f90-mod/petsclog.h /petsc/src/sys/f90-mod/petscsys.h90 /petsc/src/sys/f90-mod/petscsysmod.F /petsc/src/sys/f90-src/f90_cwrap.c /petsc/src/sys/fileio/fretrieve.c /petsc/src/sys/fileio/mprint.c /petsc/src/sys/fileio/sysio.c /petsc/src/sys/ftn-custom/zutils.c /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/stagelog.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/logging/xmllogevent.h /petsc/src/sys/memory/mtr.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/objects/gcomm.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/olist.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/pgname.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/objects/pname.c /petsc/src/sys/objects/prefix.c /petsc/src/sys/objects/state.c /petsc/src/sys/objects/tagm.c /petsc/src/sys/objects/version.c /petsc/src/sys/utils/arch.c /petsc/src/sys/utils/ctable.c /petsc/src/sys/utils/matheq.c /petsc/src/sys/utils/mathinf.c /petsc/src/sys/utils/memc.c /petsc/src/sys/utils/sorti.c /petsc/src/sys/utils/str.c /petsc/src/sys/webclient/box.c /petsc/src/sys/webclient/client.c /petsc/src/sys/webclient/globus.c /petsc/src/sys/webclient/google.c /petsc/src/sys/webclient/tellmycell.c /petsc/src/sys/webclient/textbelt.c /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/interface/taosolver_fg.c /petsc/src/tao/linesearch/interface/taolinesearch.c /petsc/src/ts/adapt/impls/dsp/adaptdsp.c /petsc/src/ts/impls/implicit/radau5/radau5.c /petsc/src/ts/impls/implicit/sundials/sundials.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tscreate.c /petsc/src/ts/interface/tssen.c /petsc/src/ts/trajectory/interface/traj.c /petsc/src/vec/is/ao/impls/basic/aobasic.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c /petsc/src/vec/is/is/interface/index.c /petsc/src/vec/is/is/utils/iscoloring.c /petsc/src/vec/is/is/utils/isdiff.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/vec/interface/ftn-custom/zvectorf.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/projection.c /petsc/src/vec/vec/utils/vecstash.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/impls/vscat.c /petsc/src/vec/vscat/interface/vscreate.c
64c72086	29-Jan-2018	Matthew G. Knepley <knepley@gmail.com>	Plex: Added support for integrating on boundaries /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petscfe.h dtfe.c /petsc/src/dm/impls/plex/plexfem.c
a8918d07	14-Apr-2018	Satish Balay <balay@mcs.anl.gov>	migrate warning fix from next-tmp /sandbox/petsc/petsc.master-3/src/dm/dt/interface/dtfe.c:5254:37: warning: ‘auxOnBd’ may be used uninitialized in this function [-Wmaybe-uninitialized] /petsc/include/petsclog.h dtfe.c /petsc/src/dm/impls/plex/examples/tests/output/ex7_11.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_4.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_5.out /petsc/src/dm/impls/plex/examples/tutorials/output/ex5_new_dm_view.out /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/baij/seq/baijfact2.c /petsc/src/mat/impls/baij/seq/baijfact3.c /petsc/src/mat/impls/baij/seq/baijfact81.c /petsc/src/mat/impls/sell/seq/sell.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex62.c 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534d39fe	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/tisaac/feature-dmfield' * origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: Merge remote-tracking branch 'origin/tisaac/feature-dmfield' * origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: silence static analyzer warning PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM DMField: default initialization of variable PetscFE: fix integration for openCL PetscFEGeomComplete(): correct normal vector in 2D. DMField: c++/complex fixes DMField: empty processor protections DMField regression test fixes DMLabel: try to keep stride IS as stride IS as much as possible DMPlexRefine(): create depth before hybrid-bounded label DMField: documentation of interface DMField: implement shell DMPlex: rename newly created label ... Conflicts: src/dm/dt/interface/dtfe.c src/snes/examples/tutorials/ex69.c src/snes/utils/dmplexsnes.c show more ... /petsc/include/petsc/finclude/petscdm.h /petsc/include/petsc/private/dmfieldimpl.h /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petscdm.h /petsc/include/petscdmfield.h /petsc/include/petscdmplex.h /petsc/include/petscdmtypes.h /petsc/include/petscfe.h /petsc/include/petscsnes.h /petsc/src/dm/dt/examples/tests/ex5.c /petsc/src/dm/dt/examples/tests/makefile /petsc/src/dm/dt/examples/tests/output/ex5_0.out dt.c dtfe.c ftn-custom/zdtfef.c /petsc/src/dm/field/examples/makefile /petsc/src/dm/field/examples/tutorials/ex1.c /petsc/src/dm/field/examples/tutorials/makefile /petsc/src/dm/field/examples/tutorials/output/ex1_da.out /petsc/src/dm/field/examples/tutorials/output/ex1_da_1.out /petsc/src/dm/field/examples/tutorials/output/ex1_da_2.out 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5fa8d5ab	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/knepley/fix-fe-vector-spaces' * origin/knepley/fix-fe-vector-spaces: (21 commits) SNES ex12: Updated test output Plex ex8: Updated test output Plex ex7: Up Merge remote-tracking branch 'origin/knepley/fix-fe-vector-spaces' * origin/knepley/fix-fe-vector-spaces: (21 commits) SNES ex12: Updated test output Plex ex8: Updated test output Plex ex7: Updated test output Plex ex5: Updated test output Plex ex4: Updated test output Plex ex3: Updated test output Plex ex20: Updated test output Plex ex19: Updated test output Plex ex18: Updated test output Plex ex17: Updated test output Plex ex16: Updated test output Plex ex13: Updated test output Plex ex12: Updated test output Plex ex1: Updated test output DualSpace: Interaction of branches FAS: Added viewing during coarse correction Plex+FEM: Fixes for reorg of vector spaces which I missed - Fixed DMPlexComputeInterpolatorNested() field offsets - Fixed DMPlexComputeInjector() PetscFE: Fixed viewers - Added PetscDualSpace viewer - Can view FE without quadrature PC: Added some options and documentation for BJacobi, ASM, Richardson Plex: Fixes for ASCII viewer ... show more ... dtfe.c /petsc/src/dm/impls/plex/examples/tests/output/ex12_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_3.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_4.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_5.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_6.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_7.out /petsc/src/dm/impls/plex/examples/tests/output/ex12_8.out /petsc/src/dm/impls/plex/examples/tests/output/ex13_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex13_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex13_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex13_3.out /petsc/src/dm/impls/plex/examples/tests/output/ex16_0.out 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c9ece94a	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/knepley/fix-fe-bd-integral' * origin/knepley/fix-fe-bd-integral: Plex+SNES: Fix BdResidual - Use DMPlexGetSubpoint() for aux closure, in case it is a boundary Merge remote-tracking branch 'origin/knepley/fix-fe-bd-integral' * origin/knepley/fix-fe-bd-integral: Plex+SNES: Fix BdResidual - Use DMPlexGetSubpoint() for aux closure, in case it is a boundary mesh - Be careful about Plex conversion FE: Fixed boundary integration - Allow auxiliary dm to be a different dimension, need dimAux and different tabulation FE: Small confusion about topological vs coordinate dimension PetscDS: The u_x array must have size dimEmbed because the derivatives are a function of the coordinate dim, not topological dim Plex: Added DMPlexGetSubpoint() - This returns the point in a submesh corresponding to some point in the original mesh - This replaces custom code in projection show more ... /petsc/include/petscdmplex.h dtds.c dtfe.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/snes/utils/dmplexsnes.c
e429e28d	13-Apr-2018	Matthew G. Knepley <knepley@gmail.com>	Merge remote-tracking branch 'origin/knepley/fix-dm-gmg' * origin/knepley/fix-dm-gmg: Plex+SNES: Fixed test output after naming vectors in solver loop DM: Improved viewing DM: DMCreateSubDM() Merge remote-tracking branch 'origin/knepley/fix-dm-gmg' * origin/knepley/fix-dm-gmg: Plex+SNES: Fixed test output after naming vectors in solver loop DM: Improved viewing DM: DMCreateSubDM() should propagate the coarse mesh and DS properly PetscDS: Dammit, these missed the other ChangeSet PetscDS: Added flag for turning off Jacobian preconditioned - Added PetscDSUseJacobianPreconditioner PetscDS: Fix viewing with a quadrature DS: Fixes for ASCII viewer PetscDS: Updated copy functions - Added PetscDSSelectEquations() which only copies a subset for a subDM - Added PetscDSCopyConstants() - Added docs DM: Allow outputting residual/solution vectors at SNES iterates easily - I now think ViewFromOptions is way easier than monitors DM: Do not allow a locked vector to be 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6294108e	19-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield * origin/knepley/fix-snes-ex69: (311 commits) PetscFECreateDefault: fix custom Fortran interface to use MPI_ Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield * origin/knepley/fix-snes-ex69: (311 commits) PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM cleanup very ugly PCGAMG manual page minor clarifications for VecScatterCreate() manual page gcov: PETSC_ARCH is required onlyfor -run_gcov - and not for -merge_gcov [where it doesn't exist] make clearer in help statements what --with-external-packages-dir is for. Website: Added news entry for PETSc User Meeting 2018 on main page. CUDA: Further test output fixes for mat_tests-ex2 Turn off elemental test for parmetis running since this does not work on batch systems. 3.8 Changes: KSPCHEBYSHEV CUDA: Fixed most test errors due to MatMultTranspose* website: update urls website: fix Jason's name to match pic. Also add Todd's pic Dev manual: copyedit DMPlexDistributeLabels: Propagate the output flag cuda/cusp: update minimum supported versions of cuda to 7.5 and cusp to 0.5.0 ... show more ... /petsc/.gitignore /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/pnetcdf.py /petsc/config/BuildSystem/config/packages/sowing.py 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d417e303	18-Mar-2018	Jed Brown <jed@jedbrown.org>	PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm ftn-custom/zdtfef.c /petsc/src/snes/examples/tutorials/ex69.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex69_0.out /petsc/src/snes/examples/tutorials/output/ex69_1.out /petsc/src/snes/examples/tutorials/output/ex69_2.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out /petsc/src/snes/examples/tutorials/output/ex69_p2p1ref.out /petsc/src/snes/examples/tutorials/output/ex69_q1p0.out /petsc/src/snes/examples/tutorials/output/ex69_q1p0ref.out /petsc/src/snes/examples/tutorials/output/ex69_q2p1.out /petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out /petsc/src/snes/examples/tutorials/output/ex69_q2p1ref.out /petsc/src/snes/examples/tutorials/output/ex69_q2q1.out /petsc/src/snes/examples/tutorials/output/ex69_q2q1ref.out
e8d98e54	28-Feb-2018	Matthew G. 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600a1778	17-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	FE: Fixed boundary integration - Allow auxiliary dm to be a different dimension, need dimAux and different tabulation dtfe.c
558fefac	17-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	FE: Small confusion about topological vs coordinate dimension dtfe.c
fd558bbc	17-Mar-2018	Matthew G. 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aee2b723	16-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	PetscFE: fix integration for openCL dtfe.c
32c2c4bc	14-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	PetscFEGeomComplete(): correct normal vector in 2D. We get the normal vector from the unit basis vector added to complete the Jacobian in a way that makes the determinant positive. In 3D, this is f PetscFEGeomComplete(): correct normal vector in 2D. We get the normal vector from the unit basis vector added to complete the Jacobian in a way that makes the determinant positive. In 3D, this is fine, because by convention the facets are oriented with outward normal, but in 2D they are not, so we have to invert the sign. show more ... dtfe.c
264c6096	14-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	DualSpace: Interaction of branches dtfe.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/snes/impls/fas/fas.c
4d1a973f	13-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	DMField: c++/complex fixes /petsc/include/petsc/private/dmfieldimpl.h /petsc/src/dm/dt/examples/tests/ex5.c dtfe.c /petsc/src/dm/field/examples/tutorials/ex1.c /petsc/src/dm/field/impls/da/dmfieldda.c /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/impls/da/dacorn.c /petsc/src/sys/classes/random/impls/random123/random123.c /petsc/src/sys/classes/random/impls/sprng/sprng.c
fd7aed7c	06-Mar-2018	Matthew G. 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55c1f793	22-Feb-2018	Matthew G. Knepley <knepley@gmail.com>	PetscDS: Added flag for turning off Jacobian preconditioned - Added PetscDSUseJacobianPreconditioner dtds.c
3e60c2a6	06-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	PetscDS: Fix viewing with a quadrature dtds.c
f35450b9	01-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	DS: Fixes for ASCII viewer dtds.c
9252d075	06-Mar-2018	Matthew G. 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/petsc/src/tao/unconstrained/examples/tutorials/makefile /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out /petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock2_1.out /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/tao/unconstrained/impls/owlqn/owlqn.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex16adj.c /petsc/src/ts/examples/tutorials/ex16opt_p.c /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20fwd.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/hybrid/ex1adj.c /petsc/src/ts/examples/tutorials/hybrid/ex1fd.c /petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c /petsc/src/ts/examples/tutorials/output/ex16opt_ic_1.out /petsc/src/ts/examples/tutorials/output/ex16opt_p_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out /petsc/src/ts/examples/tutorials/output/ex20fwd_1.out /petsc/src/ts/examples/tutorials/output/ex20fwd_2.out /petsc/src/ts/examples/tutorials/output/ex20opt_ic_1.out /petsc/src/ts/examples/tutorials/output/ex20opt_p_1.out /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3sa.c /petsc/src/ts/examples/tutorials/power_grid/ex9adj.c /petsc/src/ts/examples/tutorials/power_grid/ex9opt.c /petsc/src/ts/examples/tutorials/power_grid/makefile /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_2.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/impls/pseudo/posindep.c /petsc/src/ts/interface/makefile /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tsreg.c /petsc/src/ts/interface/tssen.c /petsc/src/ts/trajectory/impls/visualization/trajvisualization.c /petsc/src/vec/is/is/utils/iscomp.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/examples/tests/ex15.c /petsc/src/vec/vec/examples/tests/ex16.c /petsc/src/vec/vec/examples/tests/output/ex15_1.out /petsc/src/vec/vec/examples/tests/output/ex16_1.out /petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/dvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h /petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c /petsc/src/vec/vec/impls/seq/seqcusp/cuspvecimpl.h /petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu /petsc/src/vec/vec/interface/rvector.c
741db25d	13-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	DMField: empty processor protections /petsc/include/petscdmfield.h dtfe.c /petsc/src/dm/field/examples/tutorials/ex1.c /petsc/src/dm/field/examples/tutorials/output/ex1_shell.out /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/field/impls/shell/dmfieldshell.c /petsc/src/dm/field/interface/dmfield.c /petsc/src/dm/impls/forest/p4est/pforest.c /petsc/src/dm/impls/plex/examples/tests/output/ex10_group_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex10_group_2.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/label/dmlabel.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/output/ex18_adv_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out /petsc/src/ts/utils/dmplexts.c
805e7170	26-Feb-2018	Toby Isaac <tisaac@cc.gatech.edu>	DMField: evaluate FV implementation for DS /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petscdmplex.h /petsc/include/petscsnes.h dt.c /petsc/src/dm/field/examples/tutorials/ex1.c /petsc/src/dm/field/examples/tutorials/output/ex1_ds.out /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/interface/dm.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/utils/dmplexts.c
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