PetscFE: Updates to non-affine

Merge branch 'master' into knepley/feature-fem-dgspace

* master: (593 commits)
Bib: Added Top500 and fixed entry
fun3d: update PetscMallocValidate() usage
bib: rename ref with duplicate key

Merge branch 'master' into knepley/feature-fem-dgspace

* master: (593 commits)
Bib: Added Top500 and fixed entry
fun3d: update PetscMallocValidate() usage
bib: rename ref with duplicate key
Webpage: Corrected '-dm_mat_type cusp' to 'dm_mat_type aijcusp'.
Allow calling MatGetBlockSize[s]() before matrix preallocation
SNESLINESEARCHBT: Set the norms when exiting early due to negligible step.
SNESQN: only monitor real part of dot product (fails with C++ complex)
Corrected the #include statement in the man pages for the PetscObjectComposedDataSet/Getwhatever routines.
DMPlex: Added doc for DMPlexGetHybridBounds()
winzip: detect if winzip is used to extract petsc.tar.gz and error out.
configure: remove self.archIndependent as its not being used. [it is used to create externalpackages/package/arch dir which is unused]
configure: fix packages using package-dir/PETSC_ARCH as out-of-source-build location Perhaps this should be changed to package-dir/build?
configure: remove dead code previously used to download BuildSystem
configure: check if compilerDefines [and compilerFixes] exist in framework before using them
configure: save/restore reconfigure.py when --with-clean is used
configure: add --with-clean option to delete buildfiles/externalpackages in PETSC_DIR/PETSC_ARCH and potential externalpackages in --with-external-package-dir/PETSC_ARCH
configure: With --with-externalpackages-dir=dir store/build packages in dir/PETSC_ARCH
Add MatSeqSBAIJSetPreallocationCSR()
configure: switch to using PETSC_DIR/PETSC_ARCH/externalpackages by updating package.py to use externalpackages.py as the externalPackagesDirProvider
configure: move dead code configureExternalPackagesDir() from petscdir.py to externalpackagesdir.py Also set PETSC_DIR/PETSC_ARCH/externalpackages as the externalpackagesdir
...

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PetscFE: Added non-affine FE type

PetscFE: Fixed syntax bug

PetscFE: Removed offset members that were used once

PetscFE: Use correct flags for code inclusion for auxiliary fields in OpenCL

DMPlex: Fixed flop calculation for OpenCL evaluator
- The old version had (2+2)*dim*N_comp, but I think this should only be 2*dim, which is a 5% effect

partial update of SAWs with master

crashes on mallocs, no idea why

PetscFE: Added support for tensor product cells in PetscDualSpace_Lagrange

DM: Added DMGet/SetCoordinateSection()
- Removed obsolete DMPlexGetCoordinateSection()

PetscFE: Added tensor product polynomial spaces

Compiler: Fix warnings

Wrapped math.h and quadmath.h functions used in petsc source exempting examples

Merge branch 'jed/remove-dynamic-loading-option'

Option --with-dynamic-loading has been removed. Similar functionality
is available via the run-time option -dynamic_library_preload.

* jed/remove-d

Merge branch 'jed/remove-dynamic-loading-option'

Option --with-dynamic-loading has been removed. Similar functionality
is available via the run-time option -dynamic_library_preload.

* jed/remove-dynamic-loading-option:
Sys: PetscContainerCreate must call PetscSysInitializePackage
Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES

Conflicts:
src/dm/impls/mesh/mesh.c
src/dm/interface/dlregisdmdm.c
src/docs/website/documentation/changes/dev.html

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PetscDualSpace: Updated to new PetscQuadrature names

Merge branch 'knepley/feature-fem-dgspace' into knepley/fix-fem-0d

* knepley/feature-fem-dgspace:
PetscFE: Fixed quadrature names for OpenCL
PetscSpace: Added a DG space - Defined on a set of qu

Merge branch 'knepley/feature-fem-dgspace' into knepley/fix-fem-0d

* knepley/feature-fem-dgspace:
PetscFE: Fixed quadrature names for OpenCL
PetscSpace: Added a DG space - Defined on a set of quadrature points - Need tests
PetscQuadrature: Revamped - Removed basis tabulation - Shortened names - Added PetscQuadratureView()

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PetscDualSpace: Add 0d corner case

PetscQuadrature: Add a 0d corner case

PetscFE: Fixed quadrature names for OpenCL

PetscSpace: Added a DG space
- Defined on a set of quadrature points
- Need tests

PetscQuadrature: Revamped
- Removed basis tabulation
- Shortened names
- Added PetscQuadratureView()

PetscDualSpace: Pointer check barfs for function pointer

PetscDualSpace: Fixed orientation of reference tetrahedron
- Now this does not match FIAT

PetscDualSpace: Fixed numDof for P0

PetscDualSpace: Added PetscDualSpaceApply() for the action of a functional
- Declared PetscDualSpaceGetFunctional()