some doc/manual page fixes

DT: Add different KS tests for distribution inputs
- Add PetscProbComputeKSStatisticWeighted() and PetscProbComputeKSStatisticMagnitude()
- Add KS test viewer

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the Pe

Plex+PetscFE: Fixes to allow embedded manifolds
- Add PetscFEGeomMode to describe geometry
- Reorganized PetscFEGeom
- PetscFEGeomCreate(), DMFieldCreateFEGeom() and DMSNESGetFEGeom() now take the PetscFEGeomMode
- J and invJ have dE dimensions
- f1, g1, g2, g3 have dE dimensions
- FIX the dim argument of all point function is really dE because it is used to index the gradients
- Clarified behavior of PetscFEGeomGetCellPoint()
- Now -dm_plex_coordinate_dim can change the coordinate dimension of a mesh created by Plex
- Implicit cell geometry must be used when dim != cdim

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PetscDS: Add upper and lower bounds
- Add PetscDSGet/SetLowerBound(), PetscDSGet/SetUpperBound(), PetscDSCopyBounds()

Remove useless code

Merge remote-tracking branch 'origin/release'

Update file dtds.c

DT: Small doc corrections

brain dead fixes for useless casts in examples

Brain dead fixes for useless casts

Merge remote-tracking branch 'origin/release'

Fix ranlib warnings 'file has no symbols'

These warnings appear in macOS when configured --with-shared-libraries=0

/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-nosh

Fix ranlib warnings 'file has no symbols'

These warnings appear in macOS when configured --with-shared-libraries=0

/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(sectionhdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(zhdf5io.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(hdf5io.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(aijhdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(baijfact81.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(densehdf5.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(feceed.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(fvceed.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: arch-darwin-c-debug-noshared/lib/libpetsc.a(plexhdf5xdmf.o) has no symbols

Includes the removal of unnecessary custom fortran stubs.

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Unifies all context destructors to have a form of PetscCtxDestroyFn == PetscErrorCode (*)(void **)

Changes the previous subset of destructor APIs that used PetscErrorCode (*)(void *) (mostly those t

Unifies all context destructors to have a form of PetscCtxDestroyFn == PetscErrorCode (*)(void **)

Changes the previous subset of destructor APIs that used PetscErrorCode (*)(void *) (mostly those that
used PetscContainer

- Now allows any context to be a PetscObject
- Will provide a cleaner mapping to bindings in other languages
- Simplifies the maintenance of PETSc source code; improves clarity

Not backward compatible, compiler warnings will tell users what functions need to be updated

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CI: enable compilation of examples in some stage-1 jobs

Fix typos

Fix wrong PetscErrorCode

Use PetscObjectContainerCompose() when applicable

Fix -Wextra-semi-stmt

src/dm/dt/fe/interface/fe.c:2610:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2610 | petsc_e

Fix -Wextra-semi-stmt

src/dm/dt/fe/interface/fe.c:2610:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2610 | petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, 2);
| ^
src/dm/dt/fe/interface/fe.c:2612:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2612 | petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, 3);
| ^
src/dm/dt/fe/interface/fe.c:2614:54: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2614 | petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, dE);
| ^
src/dm/dt/fe/interface/fe.c:2640:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2640 | petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, 2);
| ^
src/dm/dt/fe/interface/fe.c:2642:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2642 | petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, 3);
| ^
src/dm/dt/fe/interface/fe.c:2644:54: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2644 | petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, dE);
| ^
src/dm/dt/fe/interface/fe.c:2670:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2670 | petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, 2);
| ^
src/dm/dt/fe/interface/fe.c:2672:53: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2672 | petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, 3);
| ^
src/dm/dt/fe/interface/fe.c:2674:54: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
2674 | petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, dE);
|
| ^

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CI: update checkclangformat to use clang-format-19.1.0

Remove unneeded parentheses

PetscFEIntegrateJacobian_Basic: optimize assembly code

- skipping NULL callbacks
- add dimension dependent kernels for g1, g2 and g3
- rework loops

Sparse indices work left commented for possible f

PetscFEIntegrateJacobian_Basic: optimize assembly code

- skipping NULL callbacks
- add dimension dependent kernels for g1, g2 and g3
- rework loops

Sparse indices work left commented for possible future implementations

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docs: TSIMEX -> TSARKIMEX

Use NULL or nullptr instead of casted 0

PetscFE: fix debug prints

PetscFEIntegrateJacobian_Basic: I guess these are typos