mhyp.c: Fix use of DMDAGetInfo after DMDABoundaryType changes

Hg-commit: 8ca681e4be0514a37f861413b3fe85eec3b397f6

removed #define PETSCXXX_DLL from top of all source files

Hg-commit: b784aa18ddcf5337d4011d34f0fa008681695ac1

removed some dead source code

Hg-commit: 342f9787a0a59ad7e88a8e79ed0855ec31534da5

fix DMDACreate[1|2]d() for C++

Hg-commit: e66063444acf60414e03aa61a6947e4ffee57dbc

dmda compile fixex

Hg-commit: 7feb41499d81497670e9ed1c6586ccd16216a69c

changed DMDA API to take multiple DMDABoundaryType (one per dimension) in the creation/setup of a DMDA

Hg-commit: f3a3f48d5d7ad4f784555e3be423f56150a7d810

- DMDASetPeriodicity() -> DMDASetBoundaryType()
- fix a few stray 'DAPeriodicType's in conf/adic*.init
- document API change in changes/dev.html

Hg-commit: 80e1d7833c4694bf472a1fa82e609bd31e6a8847

removed hardcoded DMDAXPeriodic check, DMDAPeriodicType --> DMDABoundaryType, updated changes dev webpage

Hg-commit: 739d802ea577b8dac09fec35a3e3a65d450ab161

From: Ethan Coon <ecoon@lanl.gov>
Subject: Re: [petsc-dev] DMDA_*PERIODIC and DMDA_XYZGHOSTED
Attached is a patchq for enabling DMDA_*GHOSTED to be used, in which
case ghost nodes are included even a

From: Ethan Coon <ecoon@lanl.gov>
Subject: Re: [petsc-dev] DMDA_*PERIODIC and DMDA_XYZGHOSTED
Attached is a patchq for enabling DMDA_*GHOSTED to be used, in which
case ghost nodes are included even at domain boundaries of nonperiodic
dimensions. The DMDAPeriodicType enum was redone, but includes
DMDA_XYPERIODIC/etc to make it compatible with the old version of the
enum. To use, simply compose the DMDAPeriodicType with bitwise or:

DMDA_XPERIODIC | DMDA_YGHOSTED, for example.

Hg-commit: 3923fa35e382f410277f9b94d7f501d3c0a8983b

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commit after merge

Hg-commit: 6e96dcb7fd787a51921e809e4299bf76239a310b

fixed .bib entries with Gail's corrections
removed all checks of nonzero pointer before call to PetscFree and setting to zero of pointer after PetscFree, since PetscFree() does that all automatically

fixed .bib entries with Gail's corrections
removed all checks of nonzero pointer before call to PetscFree and setting to zero of pointer after PetscFree, since PetscFree() does that all automatically

Hg-commit: 0f5bef9ea1fcd7ad8418fab6181ef990ea35c1db

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changed hypre makefile to require hypre package
changed sacusp makefile to ignore sacusppoly for now as we work out bugs with cusp developers

Hg-commit: cce27326fc421bd49c3872100bc56e69b5d2154d

Add src/dm/impls/da/hypre/makefile

Hg-commit: fb2397cfd582983ad9c82e983b5a2464ad55a9be

moved mhyp.c to seperate directory so do not need if defined hypre for entire file

Hg-commit: 5909da589d1be4b138405b1dbdf4bea0def124c1

Now requirepackage is only used for proper packages, functions use requiresfunction, and the rest use requiresdefine

Hg-commit: dd65fd3461c02753386917514e6ebe12d345a30e

added MatFindZeroDiagonals()
added docs about weakness of DMView(), DMDALoad() for DMDA and binary viewer

Hg-commit: 2c69111a371375ded3a523f97ab010afdba2995d

changed Matlab spelling to MATLAB some general MATLAB cleanup

Hg-commit: efcb24f191dfedc98b283d9e63e7859032e8ef35

fixed manual page for DACreate1d() meaning of m
removed use of -vec_type and -mat_type from VecLoad() and MatLoad() you should call VecSetFromOptions() or MatSetFromOptions() first if you want to se

fixed manual page for DACreate1d() meaning of m
removed use of -vec_type and -mat_type from VecLoad() and MatLoad() you should call VecSetFromOptions() or MatSetFromOptions() first if you want to se the type.

Hg-commit: e916203a096c6dfb9d56dbf6e77b05d227bee0f4

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removed Petsc exception handling infrastructure that was rarely used and too cool for school

Hg-commit: 6770e4c217feb62ad89ed16a68866b6c1d0aa063

moved definition of PETSC_STDCALL to private/fortranimpl.h where it belongs
removed all DLL export/import stuff since it was never used and never will be
removed MatPermuteSparsify() since it sucked.

moved definition of PETSC_STDCALL to private/fortranimpl.h where it belongs
removed all DLL export/import stuff since it was never used and never will be
removed MatPermuteSparsify() since it sucked.

Hg-commit: 72f7a5e60333f6c9780d56fcce45657940d16b13

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changed all EXTERN to extern the CAPS served no purpose

Hg-commit: cdf5985509992c2237dbbe07f14278cccee0306c

fixes for complex

Hg-commit: 0e53ea14be8a64ccbfad2f592c69dca2f2ccd4d6

Modified DMGetInterpolation_DA_{1D,2D,3D}_Q1 functions to supoort interpolation
on deformed grids in a robust manner. Linear(1D),Bilinear(2D),Trilinear(3D) interpolation
is used to define the interpo

Modified DMGetInterpolation_DA_{1D,2D,3D}_Q1 functions to supoort interpolation
on deformed grids in a robust manner. Linear(1D),Bilinear(2D),Trilinear(3D) interpolation
is used to define the interpolation.

Hg-commit: 33919cd5afc807e4c875da59bf591e3643738fb2

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Forced creation of the coordinate vector before generating the coords on the refined or coarsened DA.

Hg-commit: 75e54a793325ffddae021701e98d4a9a162fa821

Modified DMRefine_DA so that if coordinates were define on the coarse DA, they are interpolated onto the refined DA.
Modified DMCoarsen_DA so that if coordinates were defined on the fine DA, they are

Modified DMRefine_DA so that if coordinates were define on the coarse DA, they are interpolated onto the refined DA.
Modified DMCoarsen_DA so that if coordinates were defined on the fine DA, they are injected down to the coarsened DA.

Hg-commit: 63959d50dd078d08c754b614fed798b914a8256b

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