| 139d9f51 | 15-Mar-2016 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-dmda-add-accessors'
* knepley/feature-dmda-add-accessors:
DMDA: Added DMDAGetDof(), DMDAGetStencilWidth(), DMDAGetStencilType() because huge accessors suck |
| f55fe9e4 | 14-Mar-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'barry/fix-private-functions' |
| fb6725ba | 14-Mar-2016 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA: Added DMDAGetDof(), DMDAGetStencilWidth(), DMDAGetStencilType() because huge accessors suck |
| 59f3ab6d | 14-Mar-2016 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA+Doc: Small fixes |
| 7fe7c8fe | 09-Mar-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDRaw: Fixes to VecView_MPI_Draw_DA2d()
* Add option -draw_contour_axis to suppress drawing coordinates and labels
* Print coordinates with format %0.2e |
| eba35f42 | 09-Mar-2016 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'mlange/fix-plex-multi-level-overlap'
* mlange/fix-plex-multi-level-overlap: (259 commits)
Plex: Update ex12_5 with correct level-2 overlap
DMLabel: Add missing cleanup for DMLabelG
Merge branch 'mlange/fix-plex-multi-level-overlap'
* mlange/fix-plex-multi-level-overlap: (259 commits)
Plex: Update ex12_5 with correct level-2 overlap
DMLabel: Add missing cleanup for DMLabelGather()
Plex ex12: Fixed variable initialization and some output
Plex ex11: Added error checking
Plex ex14: Now boundary label does not have cells
Plex ex1: Now boundary label does not have cells
Plex ex1: Fix for VTK format
added some debugging code, getting ready to branch
added some print statements, should be an -info...
smome cleaning up
restructured ex11 to allow for problem specific BCs
DMPlex: Update test ex12_5 with correct level-2 overlap
DMPlex: Use global processSF in DMPlexPartitionInvert
DMPlex: Add remote leaf contributions to roots in DMLabelPropagate
DMPlex: Add DMLabelGather to migrate label values from leafs to roots
DMPlex: Refactor DMLabelDistribute to separate point stratum distribution
DMPlex: Add propagation of remote point donations for multi-level overlap
DMPlex: Fix DMLabelDistribute for all-to-all migrations
Plex: make extern exactly match prototype: semantic match is not enough.
DMP4est: typo fix
...
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|
| d51b1861 | 04-Mar-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Since MatHYPRE_IJMatrixCreate();and MatHYPRE_IJMatrixCopy() are used in petscpc library
they need to be labeled as PETSC_EXTERN
Reported-by: nightly tests |
| 832b7ceb | 03-Mar-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDraw: Explicitly save draw in {Vec|Mat|DMDA}View() routines |
| df8d4941 | 03-Mar-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDraw: Preliminary work to fix the saving business |
| e5ab1681 | 01-Mar-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDraw: Fix VecView Seq, MPI, DMDA 1d/2d
* DMDA: fix parallel drawing and handle viewports properly in 1d and 2d
* VECSEQ/VECMPI:
* PetscDrawAxis: attempt to fix tick generation
* PetscDrawViewPo
PetscDraw: Fix VecView Seq, MPI, DMDA 1d/2d
* DMDA: fix parallel drawing and handle viewports properly in 1d and 2d
* VECSEQ/VECMPI:
* PetscDrawAxis: attempt to fix tick generation
* PetscDrawViewPorts: set coordinates before drawing lines, add flush
* PETSCVIEWERDRAW: improve error checking
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|
| 5b399a63 | 28-Feb-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDraw: Huge API refactoring
* Make PetscDraw{Clear|Flush}() routines collective functions and remove
now redundant PetscDrawSyncronized{Clear|Flush}() routines
* Make PetscDrawSave() collectiv
PetscDraw: Huge API refactoring
* Make PetscDraw{Clear|Flush}() routines collective functions and remove
now redundant PetscDrawSyncronized{Clear|Flush}() routines
* Make PetscDrawSave() collective.
* Make PetscDrawSetTitle() collective.
* Update PetscDraw{Axis|SP|HG|Bar}, make most PetscDrawXXXSetYYY()
routines either collective or logically collective
* Update PetscViewerDraw accordingly
* Update VecView_XXX_Draw[_DA_YYY]() and DMView_DA_XXX() accordingly
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| b9340eec | 03-Mar-2016 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/knepley/fix-plex-test-partitions' into tisaac/dmforest
* origin/knepley/fix-plex-test-partitions: (151 commits)
Plex ex5: Provide test partitions
Plex ex4: P
Merge remote-tracking branch 'origin/knepley/fix-plex-test-partitions' into tisaac/dmforest
* origin/knepley/fix-plex-test-partitions: (151 commits)
Plex ex5: Provide test partitions
Plex ex4: Provide test partitions
Configure: I really hate exceptions - We should rewrite this to eliminate all exceptions in favor of return codes
Configure: I hate exceptions
fix typo for 'runex19_superlu_dist_2'
Fix for freeing just what needs to be free when SuperLU_Dist factorizations reused
Updated to latest hypre pre-release with fixes for handling blas/lapack libraries
Switch back to petsc fork of SuperLU_Dist that turns of use of findMPI
PCFactorSetUpMatSolverPackage() should not crash but instead produce a useful error message if called before it is in the proper state.
Clarify that SNESGetLinearSolveIterations() does not include failed iterations.
User reported issues with downloading boost using the previous URL but not this one
Configure: Small change to log order
MatFDColoringSetUp_MPIXAIJ: fix broken initialization of colmap
Bib: Missing comma
add support for binary viewer for -ts_monitor that records time at each timestep
superlu_dist: set MPI_C_COMPILER etc options - so that superlu_dist cmake does not look for a different/incompatible mpi compiler. [and its CFLAGS].
remove reference to VecGetValuesBlocked() and VecGetValuesLocal() from manual page since they do not exist.
Stop configure if user builds with threadsafety and debugging on
Added configure option --with-viewfromoptions=0 which will speed up code with many small solves substantially
Only generate list of all PetscFunctionLists generated in debug mode since in some circumstances where many objects are created searching this list is very slow.
...
Conflicts:
src/ts/examples/tutorials/ex11.c
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|
| e0877f53 | 02-Mar-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
labeled a variety of additional internal functions as static
to prevent them from being publically available in the library |
| b05fc000 | 23-Feb-2016 |
Lisandro Dalcin <dalcinl@gmail.com> |
PetscDraw: Add utility routine PetscDrawRealToColor() |
| 86a16206 | 18-Feb-2016 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint' |
| 92e66395 | 18-Feb-2016 |
Satish Balay <balay@mcs.anl.gov> |
DMDA: fix DMDASetAOType() fortran interface to handle char argument
[Also remove unused code for dmdagetglobalindices_(), dmdarestoreglobalindices_()]
Reported-by: Randall Mackie <rlmackie862@gmail.
DMDA: fix DMDASetAOType() fortran interface to handle char argument
[Also remove unused code for dmdagetglobalindices_(), dmdarestoreglobalindices_()]
Reported-by: Randall Mackie <rlmackie862@gmail.com>
Initial-patch-from: Barry Smith <bsmith@mcs.anl.gov>
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|
| 566d766a | 15-Feb-2016 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into tisaac/dmforest
* master: (87 commits)
fixed --download-xxx=/directory to not mistake other options such as --download-mpich-pm=hydra etc
Correct spelling for Autotool
Merge branch 'master' into tisaac/dmforest
* master: (87 commits)
fixed --download-xxx=/directory to not mistake other options such as --download-mpich-pm=hydra etc
Correct spelling for Autotools libtoolize in commit a0848688a08a6eb150afdc95a2f6ce49cd4cd079
Fix for commit c8b462efbd8e8a5f06df500cf417f3a48f2b88d9 Put back the gitpreReq() check that was needed for MOAB
website: fix Fluidity link
bib/cite: add UMFPACK
nightlybuilds: update test tu use newer intel compiler [detect and use compiler path]
nightlybuilds: fix vec/ex7,ex7f link issue by using the correct LIBS option
Added support for users to provide their own download package installers --download-xxx=/directory where the directory contains the file xxx.py that is a standard PETSc package definition like in config/BuildSystem/config/packages/xxx.py
nightlybuilds: switch default intel compiler [& MKL] from 13.1.3 to 16.0.0.
mkl_pardiso: fix runex125_mkl_pardiso
mkl_pardiso: fix runex2_mkl_pardiso_cholesky
nightlybuilds: switch OSX to use boost from brew [as --download-boost is broken]
trilinos: gitcommit - always specify branch as origin/branch
Add error check to boost.py when running on Mac OS because the shared libraries created do not work since they do not have the proper rpath set
Update output files for mpi matrices that use to be seq
Move PostProcess() runs until after PETSc configure has saved all data to the filesystem so that make install will work correctly.
Switch to Trilinos release candidate for --download-trilinos Tested, failed with unresolved Kokos methods, Issue report to Trilinos team
Some configure packages UnitTest-CPP requires libtoolize to be called before autoreconf on some systems
--download-ideas now downloads unittest-cpp
simplied ./configure packages that need autoreconf to be run first (like moab and unittest-cpp) added unittest-ccp download changed downloadfilename to downloaddirname since that is what it is
...
# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
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|
| 45950774 | 11-Feb-2016 |
Satish Balay <balay@mcs.anl.gov> |
Merge branch 'maint' |
| 9192b5d6 | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
fix other typo from commit 5155992
Reported-by:Ed Bueler <elbueler@alaska.edu> |
| 99c57625 | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
fix typo in commit 5155992
Reported-by: Ed Bueler <elbueler@alaska.edu> |
| 51559925 | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Moved error check from commit 031dd00 because box stencil is needed even for P1 elements
to check whenever elements are requested
Time: 0 hours
Thanks-to: Reported-by: Jed Brown <jed@jedbrown.org> |
| 031dd00f | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Generate an error if one tries to set a DMDASetElementType() as Q1 but
has only a star stencil
Time: .07 hours
Reported-by: Ed Bueler <elbueler@alaska.edu> |
| c67aec63 | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Fix typo in commit 009f057
Reported-by: Ed Bueler <elbueler@alaska.edu> |
| 009f0576 | 05-Feb-2016 |
Barry Smith <bsmith@mcs.anl.gov> |
Improve DMDAGetElements() and DMDARestoreElements() manual pages for clarity
Time: .15 hours
Reported-by: Ed Bueler <elbueler@alaska.edu> |
| 9cc8bc54 | 03-Feb-2016 |
Jed Brown <jed@jedbrown.org> |
DMDARestoreElements: zero parameters to prevent accidental misuse after call |