fix that was reported days ago but no one fixed.
When Matt converted DMDASetDimension() to DMSetDimension() he mistyped the provider of the dimension in one of the functions

Merge branch 'knepley/feature-dm-dimension-handling'

* knepley/feature-dm-dimension-handling:
DM: Fixed DMDASetDim() in examples
Plex: Fix for isoparametric geometry
Plex: Complex fix
TS ex1

Merge branch 'knepley/feature-dm-dimension-handling'

* knepley/feature-dm-dimension-handling:
DM: Fixed DMDASetDim() in examples
Plex: Fix for isoparametric geometry
Plex: Complex fix
TS ex11: Fixed calls to DMSetCoordinateSection()
DM: FIxed DMClone() to copy dimension
Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points - We evaluate isoparametrically at the quadrature points - Changed DMDAComputeCellGeometry() --> DMDAComputeCellGeometryFEM() - Changed DMPlexComputeCellGeometry() --> DMPlexComputeCellGeometryFEM() - Added DMPlexComputeCellGeometryAffineFEM()
DM: Added a embedding dimension, different from the topological dimension - This can now be set in DMSetCoordinateSection(), or it can be automatically determined
Plex: Fix output for ex4
DM: Added DMGetDimPoints() - This replicates DMPlex/DAGetDepthStratum(), but uses the dimension which people have said is more intuitive
DM: Move dimension up into DM - Both DA and Plex had this and I think it makes sense

Conflicts:
src/dm/impls/plex/plexcreate.c

show more ...

Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points
- We evaluate isoparametrically at the quadrature points
- Changed DMDAComputeCellGeometry() --> DMDACo

Plex+DA: Now cell geometry routine can take a PetscFE in order to evaluate at quadrature points
- We evaluate isoparametrically at the quadrature points
- Changed DMDAComputeCellGeometry() --> DMDAComputeCellGeometryFEM()
- Changed DMPlexComputeCellGeometry() --> DMPlexComputeCellGeometryFEM()
- Added DMPlexComputeCellGeometryAffineFEM()

show more ...

DM: Added a embedding dimension, different from the topological dimension
- This can now be set in DMSetCoordinateSection(), or it can be automatically determined

DM: Added DMGetDimPoints()
- This replicates DMPlex/DAGetDepthStratum(), but uses the dimension which people have said is more intuitive

DM: Move dimension up into DM
- Both DA and Plex had this and I think it makes sense

DMDA: Fix VecView() for two-dimensional grids with curvilinear coordinates

DMDA: Fix VecView() displaying of coordinate limits in parallel

did not mirror 1d DMDA values correctly due to previous change consulidating block size
-options_table should have been -options_view twenty years ago

Options gui did not correctly using command line provided integer value as default
options gui did not handle negative x,y, or z dimension to allow using -da_refine option

Merge branch 'knepley/feature-problem-class'

* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate

Merge branch 'knepley/feature-problem-class'

* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
...

show more ...

PetscDS: Renamed from PetscProblem

DMDA: Fixed FE projection functions

remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix bl

remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix block size

show more ...

removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory

improve object memory logging for DA, ISLocalToGlobal and ISBLOCK

another reuse of allocated array in 2d/3d DMDA create

improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()

completed testing of ISLocalToGlobalMapping changes

fixes for DA1d creation with scaled sizes of X direction logical coordinates

removed blocked versions of ISLocalToGlobalMapping in Vec and Mat
the single ISLocalToGlobalMapping supports ISLocalToGlobalMappingApply and ISLocalToGlobalMappingApplyBlock
still some fixes need for

removed blocked versions of ISLocalToGlobalMapping in Vec and Mat
the single ISLocalToGlobalMapping supports ISLocalToGlobalMappingApply and ISLocalToGlobalMappingApplyBlock
still some fixes need for these extensive changes

show more ...

added bs argument to ISLocalToGlobalMappingCreate(), not yet used for bs > 1

Merge branch 'master' of bitbucket.org:petsc/petsc

fix DMView_DA_2d() for Draw with dof > 0 it crashed with out of range block indices

Reported-by: Peter Brune <brune@mcs.anl.gov>

doc: fix getpdflabels to count manual chapters correctly.
Also fix URLs from man pages to manual.pdf