PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM
DMLabel: try to keep stride IS as stride IS as much as possible
Make DMHasCreateInjection overrideable by subclassesDefault to PETSC_FALSE. It's only provided by Plex, Pforest, and DAin (if using DMDA_Q1 as interpolation type).
Updated output files, fixes for merge
p4est makefile: add missing pforest.c to SOURCEC
DMP4est: fix real typing for coordinates
Merge remote-tracking branch 'origin/knepley/feature-subdm-test'
DM: DMCreateSubDM() field argument should be const
Merge branch 'master' into knepley/feature-adaptor-plex* master: (56 commits) test: Disable TS ex19 with single precision PETSCVIEWERGLVIS: Support DMView_DA() out of VecView_GLVis() test: Fi
Merge branch 'master' into knepley/feature-adaptor-plex* master: (56 commits) test: Disable TS ex19 with single precision PETSCVIEWERGLVIS: Support DMView_DA() out of VecView_GLVis() test: Fix TS ex19 time drift issue with quad precision testing Minor edit to 3.8 changes log for AIJMKL/BAIJMKL. Bib: Added ref Plex: Change initializers for C89 small update as complained by nightly tests doc: fix missing from 0e50f9e530a7b78427514d3e384f6941d4a9cc62 small fix for nightly tests PetscDualSpaceApplyFVM(): Fix for change in dual space semantics Plex: All tests now passing after DMPlexCreateBoxMesh() update cleanup MatPtAP_MPIAIJ_MPIAIJ; rm MatPtAPXXX_MPIAIJ_MPIAIJ_ptap() update MatView_MUMPS() PFLOW: Bug-fix in parser. PFLOW: Bug-fix in parser. Plex: Small fix for box meshing Plex: Unified box mesh creation to DMPlexCreateBoxMesh() - Makes simplices and tensor cells - Does not work for all combinations, but gives correct error Plex: Added bounds and faces in each dim to DMPlexCreateBoxMesh() Plex: Added domain bounds to HexBoxMesh() ...
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Plex: Unified box mesh creation to DMPlexCreateBoxMesh()- Makes simplices and tensor cells- Does not work for all combinations, but gives correct error
Plex: Added domain bounds to HexBoxMesh()
Forest: Protect method- Maybe this should use TryMethod?
DMForest: Fix typo
DMP4est: Added GLVis viewer
Merge remote-tracking branch 'origin/stefano_zampini/feature-gmsh-periodic'
Merge branch 'master' into stefano_zampini/feature-gmsh-periodic* master: (1016 commits) metis: setself.downloaddirnames for change in 6d90219d8fa4f8b2fd242cc6ff9008358d87c26f fix compile warni
Merge branch 'master' into stefano_zampini/feature-gmsh-periodic* master: (1016 commits) metis: setself.downloaddirnames for change in 6d90219d8fa4f8b2fd242cc6ff9008358d87c26f fix compile warning: /sandbox/petsc/petsc.clone/src/snes/examples/tests/ex2.c:250:8: warning: ‘pointsAllProcs’ may be used uninitialized in this function [-Wmaybe-uninitialized] ierr = DMInterpolationSetUp(interpolator, dm, pointsAllProcs);CHKERRQ(ierr); migrate 'build requires: !mpiuni' to new format migrate 'build requires: !complex' to new format workarround 'division by zero' compiler warning on windows C:\cygwin64\home\petsc\PETSC~3.CLO\src\ts\examples\TUTORI~1\ex11.c(416): warning #39: division by zero if (uL->h < 0 || uR->h < 0) {for (i=0; i<1+dim; i++) flux[i] = 0./0.; return;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Reconstructed thickness is negative"); */ dos2unix to prevent warnings on opensolaris "/export/home/petsc/petsc.clone/src/ksp/ksp/examples/tests/ex53.c", line 6: warning: invalid white space character in directive fix output file - corresponding to code changes in efd4aadf157bf1ba2d80c2be092fcf4247860003 disable test on windows update log from opensolaris so that the diff is clean on linux aswell update grep in sync with change in efd4aadf157bf1ba2d80c2be092fcf4247860003 Fixed code that did not correctly set current color for block insertion Update output files that did not get fixed after previous merges Change MPIUni to not immediately abort on operations it cannot perform, instead return error code Add filter for example that can produce 1 different iteration count Example add system calloc, bad formating of %d in print, commented out code Always use (void) for functions that take no arguments, never () always need to caste PetscReal variables to (double) in print statements updates to manual page for clarity update help menu for MatRARt() -- MatRARt_mpiaij_mpiaij is supported now, but not efficient. fix nightlybuild error with c1cbb1def3f8ddca04c3998b9c06618fd1ffef35 on arch-linux-IPL64 src/ksp/pc/examples/tests ex5_1 ...Conflicts: include/petscdm.h src/dm/impls/plex/plexcreate.c src/dm/impls/plex/plexgmsh.c src/dm/impls/plex/plexhdf5.c
Merge branch 'master' into knepley/feature-dm-bc-components* master: (320 commits) fix compile warning: /sandbox/petsc/petsc.clone/src/snes/examples/tests/ex2.c:250:8: warning: ‘pointsAllProcs’ m
Merge branch 'master' into knepley/feature-dm-bc-components* master: (320 commits) fix compile warning: /sandbox/petsc/petsc.clone/src/snes/examples/tests/ex2.c:250:8: warning: ‘pointsAllProcs’ may be used uninitialized in this function [-Wmaybe-uninitialized] ierr = DMInterpolationSetUp(interpolator, dm, pointsAllProcs);CHKERRQ(ierr); migrate 'build requires: !mpiuni' to new format migrate 'build requires: !complex' to new format workarround 'division by zero' compiler warning on windows C:\cygwin64\home\petsc\PETSC~3.CLO\src\ts\examples\TUTORI~1\ex11.c(416): warning #39: division by zero if (uL->h < 0 || uR->h < 0) {for (i=0; i<1+dim; i++) flux[i] = 0./0.; return;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Reconstructed thickness is negative"); */ dos2unix to prevent warnings on opensolaris "/export/home/petsc/petsc.clone/src/ksp/ksp/examples/tests/ex53.c", line 6: warning: invalid white space character in directive fix output file - corresponding to code changes in efd4aadf157bf1ba2d80c2be092fcf4247860003 disable test on windows update log from opensolaris so that the diff is clean on linux aswell update grep in sync with change in efd4aadf157bf1ba2d80c2be092fcf4247860003 Fixed code that did not correctly set current color for block insertion Update output files that did not get fixed after previous merges Change MPIUni to not immediately abort on operations it cannot perform, instead return error code Add filter for example that can produce 1 different iteration count Example add system calloc, bad formating of %d in print, commented out code Always use (void) for functions that take no arguments, never () always need to caste PetscReal variables to (double) in print statements updates to manual page for clarity update help menu for MatRARt() -- MatRARt_mpiaij_mpiaij is supported now, but not efficient. fix nightlybuild error with c1cbb1def3f8ddca04c3998b9c06618fd1ffef35 on arch-linux-IPL64 src/ksp/pc/examples/tests ex5_1 output has changed with e6d0a238963c2a97dd04845ea512b529992c7cdb so update the output file ...
Forest: Updating to new point function interface
DM: Refactored mesh adaptivity into DMAdaptLabel() and DMAdaptMetric()- These are now DM functions, instead of composed functions- Refactor Plex refine and coarsen to feed through adaptivity- Adde
DM: Refactored mesh adaptivity into DMAdaptLabel() and DMAdaptMetric()- These are now DM functions, instead of composed functions- Refactor Plex refine and coarsen to feed through adaptivity- Added helper functions to convert Label to volume constraints and metric constraints- Got the label name out of the Metric interface
DM: Fixed problem with setting boundary conditions for selected components- The problem was that projection always set every component of a field, even when the BC was only for a certain component.
DM: Fixed problem with setting boundary conditions for selected components- The problem was that projection always set every component of a field, even when the BC was only for a certain component. Now you can pass in masking components.- Added masking components to projections over labels- Changed interface to boundary value insertion
DMPlex: allow uniform refinement for periodic meshes without maxCell/LNeeded an API change for DMSet/GetPeriodicity
DMP4est: c++ fixes
important limitation on usage should be documented
fix some glitches in DMFOREST manual page documentation
source code should never have wrapped text lines
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