History log of /petsc/src/dm/impls/plex/ (Results 1051 – 1075 of 5874)
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792fecdf25-Jun-2022 Barry Smith <bsmith@mcs.anl.gov>

Cleanup and unify naming of PetscCall routines

Commit-type: housekeeping
/spend 10m


/petsc/doc/docs/changes/dev.rst
/petsc/include/petsc/private/kernels/blockinvert.h
/petsc/include/petsc/private/kernels/petscaxpy.h
/petsc/include/petsc/private/viewerhdf5impl.h
/petsc/include/petscblaslapack.h
/petsc/include/petscerror.h
/petsc/include/petscsys.h
/petsc/include/petscviewersaws.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/composite/fecomposite.c
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/tests/ex13.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h
/petsc/src/dm/impls/forest/p4est/pforest.h
/petsc/src/dm/impls/forest/p4est/tests/ex1.c
adaptors/mmgcommon.h
plexexodusii.c
plexfem.c
plexgeometry.c
plexhdf5.c
plexmed.c
plexmetric.c
plexpartition.c
tests/ex26.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/partitioner/impls/parmetis/partparmetis.c
/petsc/src/ksp/ksp/guess/impls/fischer/fischer.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmresdeflation.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/gmres/gmreig.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/saws/kspsaws.c
/petsc/src/ksp/ksp/tutorials/ex59.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/impls/tfs/gs.c
/petsc/src/ksp/pc/impls/tfs/xxt.c
/petsc/src/ksp/pc/impls/tfs/xyt.c
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/htool/htool.cxx
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/order/spectral.c
/petsc/src/mat/order/wbm.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/tests/ex237.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/ngmres/ngmresfunc.c
/petsc/src/snes/interface/saws/snessaws.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/ams/pams.c
/petsc/src/sys/classes/draw/interface/dsave.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/ams/amsopen.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/error/pstack.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/utils/mathfit.c
/petsc/src/sys/utils/memc.c
/petsc/src/tao/interface/taosolver_bounds.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/leastsquares/impls/pounders/gqt.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tutorials/ex50.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/vec/impls/hypre/vhyp.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/seq/bvec1.c
/petsc/src/vec/vec/impls/seq/bvec2.c
ef1023bd25-Jun-2022 Barry Smith <bsmith@mcs.anl.gov>

Fix handling of PetscStack for callback functions and external package calls (and update slepc in sync)

Information was often wrong; incorrect filenames and line numbers removed

Also unified naming

Fix handling of PetscStack for callback functions and external package calls (and update slepc in sync)

Information was often wrong; incorrect filenames and line numbers removed

Also unified naming for callback function stack frames

Commit-type: error-checking, debugability
/spend 2h

show more ...


/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/doc/docs/changes/dev.rst
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscscalapack.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petsc/private/viewerhdf5impl.h
/petsc/include/petscblaslapack.h
/petsc/include/petscdevice.h
/petsc/include/petscerror.h
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscviewersaws.h
/petsc/lib/petsc/conf/rules
/petsc/makefile
/petsc/src/binding/petsc4py/src/PETSc/Sys.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscdef.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscsys.pxi
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h
/petsc/src/dm/impls/network/network.c
adaptors/mmgcommon.h
plexdistribute.c
plexpartition.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/dm/partitioner/impls/parmetis/partparmetis.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/tests/ex123.c
/petsc/src/mat/tests/ex237.c
/petsc/src/mat/tests/ex254.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tutorials/build.zig
/petsc/src/snes/tutorials/ex1z.zig
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/error/fp.c
/petsc/src/sys/error/pstack.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/interface/dlregistao.c
/petsc/src/tao/interface/fdiff.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_bounds.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/interface/taosolverregi.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tests/ex29.c
/petsc/src/ts/tests/output/ex29_1.out
/petsc/src/ts/tests/output/ex29_2.out
/petsc/src/ts/tutorials/ex2.c
/petsc/src/vec/is/utils/pmap.c
a40d1d5218-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex ex1: Added pyramid test


/petsc/share/petsc/datafiles/meshes/pyr_tet.geo
/petsc/share/petsc/datafiles/meshes/pyr_tet.msh
tests/ex1.c
tests/output/ex1_pyr_mixed_0.out
cf4edabe13-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Activate pyramids in Gmsh
- Add pyramid to VTK output


plexgenerate.c
plexgmsh.c
plexvtk.c
54fdce2b17-Jul-2022 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/fix-plex-gmsh-face-labels' into 'main'

Plex: Fix bug with reordering

See merge request petsc/petsc!5416


/petsc/doc/docs/manual/ksp.rst
/petsc/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2
plexgmsh.c
plexreorder.c
tests/ex1.c
tests/output/ex1_gmsh_1.out
tests/output/ex1_gmsh_10.out
tests/output/ex1_gmsh_10_periodic_0.out
tests/output/ex1_gmsh_11.out
tests/output/ex1_gmsh_11_periodic_0.out
tests/output/ex1_gmsh_12.out
tests/output/ex1_gmsh_14_ext.out
tests/output/ex1_gmsh_14_ext_s2t.out
tests/output/ex1_gmsh_2.out
tests/output/ex1_gmsh_3.out
tests/output/ex1_gmsh_3d_legacy_v22_bin.out
tests/output/ex1_gmsh_4.out
tests/output/ex1_gmsh_5.out
tests/output/ex1_gmsh_6.out
tests/output/ex1_gmsh_7.out
tests/output/ex1_gmsh_8.out
tests/output/ex1_gmsh_9.out
tests/output/ex1_gmsh_9_periodic_0.out
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/output/ex54_1.out
/petsc/src/ksp/ksp/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/tutorials/output/ex55_0.out
/petsc/src/ksp/ksp/tutorials/output/ex55_sa.out
/petsc/src/ksp/ksp/tutorials/output/ex56_nns_telescope.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaij.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/tao/tutorials/output/ex3_guess_pod.out
/petsc/src/ts/tutorials/output/ex11_glvis_adv_2d_tet.out
f9b7389616-Jul-2022 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-plex-label-optimize' into 'main'

Plex: Optimize lookup for depth and celltype labels

See merge request petsc/petsc!5432


/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/include/petsc/private/dmlabelimpl.h
plex.c
plexdistribute.c
plexreorder.c
plexsubmesh.c
/petsc/src/dm/label/dmlabel.c
ceb9926415-Jul-2022 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jed/posix-memalign' into 'main'

Switch from memalign to posix_memalign

See merge request petsc/petsc!5429


/petsc/config/PETSc/Configure.py
/petsc/doc/conf.py
/petsc/doc/docs/changes/dev.rst
/petsc/include/petscdm.h
plex.c
plexfem.c
/petsc/src/dm/interface/dm.c
/petsc/src/snes/tests/ex13.c
/petsc/src/sys/f90-custom/makefile
/petsc/src/sys/f90-custom/zsysf90.c
/petsc/src/sys/f90-mod/petscsys.h90
/petsc/src/sys/memory/mal.c
/petsc/src/vec/f90-mod/petscis.h90
/petsc/src/vec/is/is/interface/f90-custom/zindexf90.c
/petsc/src/vec/is/sf/utils/f90-custom/makefile
/petsc/src/vec/is/sf/utils/f90-custom/zsfutilsf90.c
/petsc/src/vec/is/sf/utils/ftn-custom/zsfutilsf.c
/petsc/src/vec/is/utils/pmap.c
d9384f2711-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Replace an expensive search


plexsubmesh.c
695799ff11-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Optimize lookup for depth and celltype labels
- Return depth label to hashing for filtering
- Return the cell type label to hashing after getting stratum bounds,
distributing, reordering
- Adde

Plex: Optimize lookup for depth and celltype labels
- Return depth label to hashing for filtering
- Return the cell type label to hashing after getting stratum bounds,
distributing, reordering
- Added DMLabelMakeAllInvalid_Internal()

show more ...


/petsc/doc/docs/changes/dev.rst
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/private/dmlabelimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/include/petscsystypes.h
/petsc/lib/petsc/conf/bfort-petsc.txt
plex.c
plexdistribute.c
plexreorder.c
plexsubmesh.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/tutorials/ex54.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex59.c
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/tfs/tfs.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/cholmod/aijcholmod.c
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparseband.cu
/petsc/src/mat/impls/aij/seq/spqr/aijspqr.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/centering/centering.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/htool/htool.cxx
/petsc/src/mat/impls/lrc/lrc.c
/petsc/src/mat/impls/sbaij/mpi/mpiaijsbaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/aijsbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex192.c
/petsc/src/mat/tutorials/ex10.c
/petsc/src/mat/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpibaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense.out
/petsc/src/mat/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij.out
/petsc/src/mat/tutorials/output/ex10_seqaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense.out
/petsc/src/mat/tutorials/output/ex10_seqdense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense_rect_hdf5.out
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/tests/ex13.c
/petsc/src/snes/tutorials/ex56.c
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqnk/bqnk.c
/petsc/src/tao/bound/impls/bqnls/bqnls.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
96b5927315-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Fix test output


tests/output/ex1_box_3d.out
tests/output/ex1_p4est_bug_overlapsf.out
tests/output/ex1_p4est_periodic_3d.out
tests/output/ex29_1.out
tests/output/ex29_quad_0.out
tests/output/ex35_hex_interp.out
tests/output/ex8_5.out
tutorials/output/ex8_3d_q1_periodic.out
tutorials/output/ex8_3d_q2_periodic.out
/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_3d_1.out
/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_3d_2.out
/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_3d_3.out
/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_3d_4.out
/petsc/src/dm/impls/swarm/tests/output/ex4_dg_3d.out
/petsc/src/dm/impls/swarm/tests/output/ex4_im_3d.out
/petsc/src/snes/tests/output/ex13_bench.out
/petsc/src/snes/tutorials/output/ex13_kokkos.out
/petsc/src/snes/tutorials/output/ex56_0.out
/petsc/src/snes/tutorials/output/ex56_cuda.out
/petsc/src/snes/tutorials/output/ex56_mpiaijmkl.out
/petsc/src/snes/tutorials/output/ex56_seqaijmkl.out
79a429ef07-Jun-2022 Matthew G. Knepley <knepley@gmail.com>

Plex ex44: Add 3D boundary extrusion tests


tests/ex44.c
tests/output/ex44_hex_adapt_0.out
tests/output/ex44_tet_adapt_0.out
fdf6c4e307-Jun-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix orientations when extruding from a 3D boundary


transform/impls/extrude/plextrextrude.c
c2df9bbf15-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix markers for hex box mesh creation


plexcreate.c
8b13a6be09-Jun-2022 Matthew G. Knepley <knepley@gmail.com>

Plex+HDF5: Fix for multiple cell types


/petsc/doc/conf.py
plexhdf5.c
/petsc/src/snes/tests/ex13.c
28351e2215-Jul-2022 Jed Brown <jed@jedbrown.org>

DMPlex: tidy read-only and avoid integer overflow/invalid indexing


plex.c
plexfem.c
8d94ca2315-Jul-2022 Jed Brown <jed@jedbrown.org>

DMCreateMassMatrix_Plex: fix local/global mix-up found by address sanitizer

I think sanitizer missed this earlier because it runs on OSX, which
doesn't have memalign, thus was using malloc and shift

DMCreateMassMatrix_Plex: fix local/global mix-up found by address sanitizer

I think sanitizer missed this earlier because it runs on OSX, which
doesn't have memalign, thus was using malloc and shift. Now with
posix_memalign, sanitizer has a clear view.

show more ...


/petsc/config/PETSc/Configure.py
/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/src/dm/impls/network/network.c
plex.c
/petsc/src/dm/impls/swarm/swarm_migrate.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/tutorials/output/swarm_ex1.out
/petsc/src/dm/tutorials/output/swarm_ex1_5.out
/petsc/src/sys/memory/mal.c
/petsc/src/vec/vec/impls/nest/vecnest.c
aab5e2ee14-Jul-2022 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/fix-plex-g2n' into 'main'

Fix Plex g2n map

See merge request petsc/petsc!4547


/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/hashset.txt
/petsc/lib/petsc/conf/rules
/petsc/makefile
/petsc/src/dm/impls/network/network.c
plexnatural.c
tests/ex15.c
tests/ex26.c
tests/ex26f90.F90
tests/ex47.c
tests/ex62f90.F90
tests/output/ex15_0.out
tests/output/ex47_0.out
tests/output/ex47_1.out
/petsc/src/dm/impls/swarm/swarm_migrate.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/tutorials/output/swarm_ex1.out
/petsc/src/dm/tutorials/output/swarm_ex1_5.out
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/vec/impls/nest/vecnest.c
7ff0444113-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Must explicitly localize coordinates if mesh is not created from options


/petsc/config/BuildSystem/config/packages/sycl.py
/petsc/doc/docs/changes/dev.rst
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/include/petscsystypes.h
/petsc/lib/petsc/conf/bfort-petsc.txt
plexcreate.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/tutorials/ex54.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex59.c
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/tfs/tfs.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/cholmod/aijcholmod.c
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparseband.cu
/petsc/src/mat/impls/aij/seq/spqr/aijspqr.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/centering/centering.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/htool/htool.cxx
/petsc/src/mat/impls/lrc/lrc.c
/petsc/src/mat/impls/sbaij/mpi/mpiaijsbaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/aijsbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex192.c
/petsc/src/mat/tutorials/ex10.c
/petsc/src/mat/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpibaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense.out
/petsc/src/mat/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij.out
/petsc/src/mat/tutorials/output/ex10_seqaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense.out
/petsc/src/mat/tutorials/output/ex10_seqdense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense_rect_hdf5.out
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/tests/ex13.c
/petsc/src/snes/tutorials/ex56.c
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqnk/bqnk.c
/petsc/src/tao/bound/impls/bqnls/bqnls.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
445019db09-Mar-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: temporarily disable tests ex15, ex26, ex26f90, and ex62f90


tests/ex15.c
tests/ex26.c
tests/ex26f90.F90
tests/ex62f90.F90
tests/output/ex15_0.out
231de6a209-Mar-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: ex47 tests globalToNatural


tests/ex47.c
tests/output/ex47_0.out
tests/output/ex47_1.out
a48df7f611-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Fixed examples


/petsc/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2
tests/ex1.c
tests/output/ex1_gmsh_1.out
tests/output/ex1_gmsh_10.out
tests/output/ex1_gmsh_10_periodic_0.out
tests/output/ex1_gmsh_11.out
tests/output/ex1_gmsh_11_periodic_0.out
tests/output/ex1_gmsh_12.out
tests/output/ex1_gmsh_14_ext.out
tests/output/ex1_gmsh_14_ext_s2t.out
tests/output/ex1_gmsh_2.out
tests/output/ex1_gmsh_3.out
tests/output/ex1_gmsh_3d_legacy_v22_bin.out
tests/output/ex1_gmsh_4.out
tests/output/ex1_gmsh_5.out
tests/output/ex1_gmsh_6.out
tests/output/ex1_gmsh_7.out
tests/output/ex1_gmsh_8.out
tests/output/ex1_gmsh_9.out
tests/output/ex1_gmsh_9_periodic_0.out
/petsc/src/ts/tutorials/output/ex11_glvis_adv_2d_tet.out
50be1cf529-Jun-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix bug with reordering
- Cannot sort the valueIS of a label


plexreorder.c
5ad74b4f22-Jun-2022 Matthew G. Knepley <knepley@gmail.com>

Plex: Use all the face tags from GMsh


/petsc/doc/docs/changes/dev.rst
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmat.h
/petsc/include/petscsystypes.h
/petsc/lib/petsc/conf/bfort-petsc.txt
plexgmsh.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/tutorials/ex54.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex59.c
/petsc/src/ksp/ksp/tutorials/ex71.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/tfs/tfs.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/cholmod/aijcholmod.c
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparseband.cu
/petsc/src/mat/impls/aij/seq/spqr/aijspqr.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/centering/centering.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/htool/htool.cxx
/petsc/src/mat/impls/lrc/lrc.c
/petsc/src/mat/impls/sbaij/mpi/mpiaijsbaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/aijsbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex192.c
/petsc/src/mat/tutorials/ex10.c
/petsc/src/mat/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpibaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense.out
/petsc/src/mat/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij.out
/petsc/src/mat/tutorials/output/ex10_seqaij_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqaij_rect_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense.out
/petsc/src/mat/tutorials/output/ex10_seqdense_hdf5.out
/petsc/src/mat/tutorials/output/ex10_seqdense_rect_hdf5.out
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/tests/ex13.c
/petsc/src/snes/tutorials/ex56.c
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqnk/bqnk.c
/petsc/src/tao/bound/impls/bqnls/bqnls.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
0dc45c6709-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Fixed examples


tests/output/ex1_exo_0.out
tests/output/ex1_exo_1.out
/petsc/src/ts/tutorials/output/ex18_adv_0.out
034d25cc09-Jul-2022 Matthew G. Knepley <knepley@gmail.com>

Plex+ExodusII: Replace empty name for side set
Contributed-by: David Andrs <andrsd@gmail.com>


plexexodusii.c

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