plex - OpenGrok history log for /petsc/src/dm/impls/plex

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
202fd40a	23-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlexView_ASCII_LATEX: add command line option to plot edges in 3D fix error in edge midpoint computation examples/tests/output/ex1_2.out examples/tests/output/ex1_5.out examples/tests/output/ex1_8.out plex.c
2f029394	22-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: add support for visualizing hybrid meshes plexvtk.c plexvtu.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
f0454737	22-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlexCreateWedgeCylinderMesh: set hybrid bounds plexcreate.c
5046d062	19-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: use PETSC_COMM_SELF to raise local errors plexrefine.c
dea2a3c7	20-Jun-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: enhancements for the GMSH reader - added cellType to gmsh struct - added support for reading hybrid meshes from GMSH - added support for reading wedge cells in GMSH - fix for embedded meshes DMPlex: enhancements for the GMSH reader - added cellType to gmsh struct - added support for reading hybrid meshes from GMSH - added support for reading wedge cells in GMSH - fix for embedded meshes - added prefix and uniform command line options - skip high order nodes for quadratic wedges show more ... /petsc/include/petsc/private/dmpleximpl.h plexgmsh.c
99836e0e	20-Jun-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: added support to interpolate hybrid meshes We start numbering from non-hybrid faces of hybrid cells (if any), so that their edges will be numbered first too. Those faces and edges will all g DMPlex: added support to interpolate hybrid meshes We start numbering from non-hybrid faces of hybrid cells (if any), so that their edges will be numbered first too. Those faces and edges will all get orientation 0, since non-hybrid faces of hybrid cells are all disjoint show more ... plexinterpolate.c
c9f63434	20-Jun-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: Add missing propagation of hybrid bounds in DMPlexUninterpolate plexinterpolate.c
4330a3fc	15-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: added simplex2tensor refiner for hybrid meshes in 2d and 3d /petsc/include/petsc/private/dmpleximpl.h plex.c plexrefine.c
cd921712	17-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: minor fixes glexg.c plexexodusii.c plexgenerate.c plexinterpolate.c
f36006cd	18-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: it may happen that a process gets only hybrid cells plexrefine.c
b8b48273	19-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: add missing hybrid bounds adaption in label creation when refining plexrefine.c
7d5acc75	17-Apr-2018	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: error if trying to set the hybrid bounds when the dimension has not been specified yet - the "dim" stratum should be created during DMPlexStratify - hybrid bounds can be set before stratific DMPlex: error if trying to set the hybrid bounds when the dimension has not been specified yet - the "dim" stratum should be created during DMPlexStratify - hybrid bounds can be set before stratification - skip "dim" label during DMCopyLabels - If the plex has all hybrid cells, DMPlexGetStratumIS will return a NULL is show more ... /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/include/petscdmtypes.h plex.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/index.html /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/pc/impls/mg/mgfunc.c
5d87c109	18-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Plex ex23: When creating the boundary mesh, filter out faces not in the original label examples/tests/ex23.c
dcc01f9a	18-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Plex: When projecting with a boundary base mesh, do not get the subpoint for a boundary aux mesh plexproject.c
158acfad	18-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Plex: Allow CreateSubmesh() to filter created faces through the input label /petsc/include/petscdmplex.h /petsc/lib/petsc/conf/test plexsubmesh.c
9f7994d6	18-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-plex-parallel-submesh' into knepley/fix-plex-submesh-projection * knepley/feature-plex-parallel-submesh: Vec: Small doc fix Plex: Remove check on submesh faces sinc Merge branch 'knepley/feature-plex-parallel-submesh' into knepley/fix-plex-submesh-projection * knepley/feature-plex-parallel-submesh: Vec: Small doc fix Plex: Remove check on submesh faces since in parallel the other cell can be absent IS: Allow ISExpand() to have optional arguments Plex ex5: Added parallel test case Plex ex5: Reorder tests Plex: DMPlexCreateHybridMesh() now takes a boundary label and returns the submesh - Added check that no cell has all vertices on the submesh Plex ex5: Renamed tests show more ... /petsc/include/petscdmplex.h examples/tests/ex4.c examples/tests/ex5.c examples/tests/output/ex5_hex_0.out examples/tests/output/ex5_hex_1.out examples/tests/output/ex5_hex_t1_0.out examples/tests/output/ex5_hex_t2_0.out examples/tests/output/ex5_quad_0.out examples/tests/output/ex5_quad_1.out examples/tests/output/ex5_quad_t1_0.out examples/tests/output/ex5_tet_0.out examples/tests/output/ex5_tet_1.out examples/tests/output/ex5_tet_t1_0.out examples/tests/output/ex5_tri_0.out examples/tests/output/ex5_tri_1.out examples/tests/output/ex5_tri_t1_0.out plexsubmesh.c /petsc/src/vec/is/is/utils/isdiff.c /petsc/src/vec/vec/interface/rvector.c
c829b4f5	18-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/fix-plex-project-tests' into knepley/fix-plex-submesh-projection * knepley/fix-plex-project-tests: Plex: Fixed evaluation of boundary functionals in projection Plex ex23: A Merge branch 'knepley/fix-plex-project-tests' into knepley/fix-plex-submesh-projection * knepley/fix-plex-project-tests: Plex: Fixed evaluation of boundary functionals in projection Plex ex23: Added a test updating the auxdm from the primary dm Plex ex23: Named test vectors - Mysteriously, values have changed in the second test show more ... /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/src/dm/field/impls/da/dmfieldda.c examples/tests/ex23.c examples/tests/output/ex23_0.out examples/tests/output/ex23_1.out plexproject.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/snes/utils/dmplexsnes.c
0fe40aa6	17-Jun-2018	Barry Smith <bsmith@mcs.anl.gov>	Merge branch 'dalcinl/dmplex/maint' /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petsclog.h /petsc/include/petscsys.h /petsc/lib/petsc/bin/maint/startnightly /petsc/lib/petsc/bin/petsclogformat.py plexdistribute.c /petsc/src/dm/interface/dlregisdmdm.c /petsc/src/docs/tex/manual/part1.tex /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petscapp.bib /petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c /petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c /petsc/src/ksp/pc/impls/is/nn/nn.c /petsc/src/mat/examples/tutorials/ex15.c /petsc/src/mat/examples/tutorials/output/ex15_3.out /petsc/src/mat/examples/tutorials/output/ex15_4.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_1.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_2.out /petsc/src/mat/examples/tutorials/output/ex15_4_alt_3.out /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c /petsc/src/mat/impls/aij/seq/aijperm/aijperm.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/partition/impls/party/party.c /petsc/src/snes/impls/fas/fas.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/eventlog.c /petsc/src/sys/logging/utils/stagelog.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/pinit.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/comb.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vscat/impls/vscat.c
0c86c063	14-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	DMPlex: Minor fixes to error checking and logging /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/sharedLibraries.py /petsc/include/petscmat.h /petsc/include/petscvec.h /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/runhtml.py /petsc/makefile /petsc/share/petsc/matlab/makefile /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/examples/tests/makefile /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/dainterp.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/forest/p4est/pforest.c /petsc/src/dm/impls/network/network.c plexdistribute.c /petsc/src/docs/website/documentation/linearsolvertable.html /petsc/src/ksp/ksp/impls/cg/gltr/gltr.c /petsc/src/ksp/pc/impls/bddc/bddc.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/mat/examples/tests/ex104.c /petsc/src/mat/examples/tests/ex219f.F90 /petsc/src/mat/examples/tests/ex49.c /petsc/src/mat/examples/tests/ex58.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/examples/tests/output/ex219f_1.out /petsc/src/mat/examples/tests/output/ex219f_2.out /petsc/src/mat/examples/tests/output/ex49_r1.out /petsc/src/mat/examples/tests/output/ex49_r1_par.out /petsc/src/mat/impls/aij/mpi/mmaij.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpiov.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/mpi/baijov.c /petsc/src/mat/impls/baij/mpi/mmbaij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/aijbaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/elemental/matelem.cxx /petsc/src/mat/impls/nest/matnest.c /petsc/src/mat/impls/sbaij/mpi/mmsbaij.c /petsc/src/mat/impls/sell/mpi/mmsell.c /petsc/src/mat/impls/sell/seq/sell.c /petsc/src/mat/interface/ftn-custom/zmatrixf.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/interface/noise/snesnoise.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/ts/examples/tutorials/ex21.c /petsc/src/ts/examples/tutorials/output/ex21_1.out /petsc/src/ts/examples/tutorials/power_grid/ex3sa.c /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_3.out /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/interface/tssen.c /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/is/is/utils/iscoloring.c /petsc/src/vec/is/utils/pmap.c
67eb269b	14-Jun-2018	Lisandro Dalcin <dalcinl@gmail.com>	DMPlex: Partition event should belong to DM class /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/petscimpl.h plex.c plexdistribute.c /petsc/src/dm/interface/dlregisdmdm.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/vec/vec/examples/tutorials/ex43.c /petsc/src/vec/vec/utils/comb.c
ab0bc224	13-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Plex: Small fix for distribute /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/pcpatchimpl.h /petsc/include/petscpc.h /petsc/src/dm/dt/interface/dtfe.c plexdistribute.c /petsc/src/ksp/pc/impls/patch/pcpatch.c /petsc/src/snes/utils/dmplexsnes.c
428f773b	13-Jun-2018	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/haplav/plex-throw-error-if-viewer-type-unsupported' /petsc/include/petscvec.h plex.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/tex/manual/makefile /petsc/src/docs/tex/manual/part1.tex /petsc/src/ksp/pc/impls/bddc/bddc.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/sys/examples/tests/ex42.c /petsc/src/sys/examples/tests/ex43.c /petsc/src/ts/examples/tutorials/ex21.c /petsc/src/vec/vec/examples/tutorials/ex21f90.F90 /petsc/src/vec/vec/examples/tutorials/ex43.c /petsc/src/vec/vec/examples/tutorials/ex43f.F90 /petsc/src/vec/vec/examples/tutorials/makefile /petsc/src/vec/vec/examples/tutorials/output/ex43f_1.out
2cf2a403	11-Jun-2018	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'master' into knepley/feature-pc-patch * master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing Merge branch 'master' into knepley/feature-pc-patch * master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ... Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c show more ... /petsc/.gitignore /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/Matlab.py 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/petsc/config/examples/arch-linux-gcc-cxx-avx2.py /petsc/config/examples/arch-linux-pkgs-valgrind.py /petsc/config/examples/arch-mswin-gnu.py /petsc/config/examples/arch-viennacl.py /petsc/config/gmakegentest.py /petsc/config/install.py /petsc/config/report_tests.py /petsc/gmakefile /petsc/gmakefile.test /petsc/include/petsc/finclude/petscdm.h /petsc/include/petsc/finclude/petscdmplex.h /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/mpiuni/mpif.h /petsc/include/petsc/private/characteristicimpl.h /petsc/include/petsc/private/dmdaimpl.h /petsc/include/petsc/private/dmfieldimpl.h /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/dmswarmimpl.h /petsc/include/petsc/private/f90impl.h /petsc/include/petsc/private/fortranimpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/pcimpl.h 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a94aea51	11-Jun-2018	Vaclav Hapla <vaclav.hapla@erdw.ethz.ch>	fix error message plex.c
d4f5a9a0	11-Jun-2018	Vaclav Hapla <vaclav.hapla@erdw.ethz.ch>	DMLoad_Plex: throw error for unsupported viewer type. This currently makes no difference as DMLoad() passes through only binary and hdf5. plex.c
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