| ef40c5dc | 05-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
ex5: new tests 2 & 2a test all HDF5 formats, also with interpolation
ex5: test 2 split into 2 and 2a to save redundant tests |
| 87053c0d | 16-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
ex5: DMView and DMLoad share the same viewer, particularly the format. |
| 4b46be31 | 12-Mar-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
... and source file also renamed. |
| 9c48423b | 14-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexCreateHDF5VizFromFile integrated into viewer and renamed.
Renamed to DMPlexLoad_HDF5_Xdmf_Internal.
Called from DMLoad_Plex() if format is set to PETSC_VIEWER_HDF5_XDMF or PETSC_VIEWER_HDF5_VI
DMPlexCreateHDF5VizFromFile integrated into viewer and renamed.
Renamed to DMPlexLoad_HDF5_Xdmf_Internal.
Called from DMLoad_Plex() if format is set to PETSC_VIEWER_HDF5_XDMF or PETSC_VIEWER_HDF5_VIZ.
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| ecc8774d | 15-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexBuild{FromCellList,Coordinates}* changed from private to internal |
| 3a8b1c54 | 13-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
ex5: format settable from options |
| 8aa4816b | 13-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
New formats PETSC_VIEWER_HDF5_{PETSC,XDMF}.
DMPlexView_HDF5_Internal rewritten. |
| 4611b931 | 12-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexWriteLabels_HDF5_Static factored out from DMPlexView_HDF5_Internal |
| 89432736 | 12-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexWriteTopology_Vertices_HDF5_Static: removed unused label and labelId args |
| 62ac7a56 | 05-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexCreateHDF5VizFromFile: employ DMPlexCreateFromCellListParallel |
| aead432e | 05-Feb-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
ex5: compare DMs only if -compare is present |
| c00cb4ed | 24-Jan-2018 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
ex5: get rid of pointSF which we're not interested in |
| e3da0c44 | 05-Dec-2017 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexCreateFromFile: call DMPlexCreateHDF5VizFromFile for -load_hdf5_viz |
| 37458aca | 05-Dec-2017 |
Vaclav Hapla <vaclav.hapla@erdw.ethz.ch> |
DMPlexCreateHDF5FromFile basic working version w/o labels |
| 95452b02 | 16-Apr-2018 |
Patrick Sanan <patrick.sanan@gmail.com> |
Man pages: add newlines after "Notes:"
This allows for proper formatting from sowing.
On OS X (using gsed, not the default BSD sed), from the PETSc root directory:
find src include -type f \(
Man pages: add newlines after "Notes:"
This allows for proper formatting from sowing.
On OS X (using gsed, not the default BSD sed), from the PETSc root directory:
find src include -type f \( -name "*.c" -or -name "*.h" -or -name "*.cxx" \) | xargs gsed -i 's/Notes\s*:\s*\(\w.*\)/Notes:\n \1/'
This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/
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|
| 92371b87 | 02-Apr-2018 |
Barry Smith <bsmith@mcs.anl.gov> |
Suggested changes/additions to DMPlex manual pages and users manual to clarify DMPlex
Commit-type: documentation |
| 64c72086 | 29-Jan-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Added support for integrating on boundaries |
| be1504a2 | 14-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-pointfunc-dim' into knepley/fix-plex-residual-loop
* knepley/fix-plex-pointfunc-dim:
Sys: Added a check for gnome-terminal, which never uses -display - Added some do
Merge branch 'knepley/fix-plex-pointfunc-dim' into knepley/fix-plex-residual-loop
* knepley/fix-plex-pointfunc-dim:
Sys: Added a check for gnome-terminal, which never uses -display - Added some docs
Plex: Made a public interface for ComputeBdResidualSingle()
Plex: The first argument to a pointfunc should be the coordinate dimension
Conflicts:
src/dm/impls/plex/plexproject.c
src/snes/utils/dmplexsnes.c
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|
| 9044fa66 | 14-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/fix-plex-residual-loop
Warning: This merge includes real changes
* master: (188 commits)
Add JuMP citation
Copyedits and updates to developers manual
Add mor
Merge branch 'master' into knepley/fix-plex-residual-loop
Warning: This merge includes real changes
* master: (188 commits)
Add JuMP citation
Copyedits and updates to developers manual
Add more protection to intrinsics
MPI: protect arguments in MPI macros
Add the missing conditionals for 64-bit build
Plex+VTK: Fix field type determination
Fix bug in name cleanup
Bib: Added ref
Plex+VTK: Fix field type determination
Plex: Updated test output - I am now hating this shit
forgot to save file after moving prototypes to petscsys.h
update Apple example project settings per Xcode
Two functions should actually be public, used, for example from Apple MacOS and iOS programs
includes should always be included relative to include directory
Apple removed old locations of docsets
SNES ex12: Updated test output
SNES ex62: Set name of solution vector - Update test output
revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html
release: set v3.9 strings
move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3
...
Conflicts:
src/snes/utils/dmplexsnes.c
src/ts/utils/dmplexts.c
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|
| 51f3a1bc | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex3: Added tests for Q3 |
| e368ef20 | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Added picture for 3D hex interpolation |
| 9609f005 | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/knepley/fix-snes-ex69'
* origin/knepley/fix-snes-ex69:
Plex: Updated test output - I am now hating this shit
SNES ex12: Updated test output
SNES ex62: Set
Merge remote-tracking branch 'origin/knepley/fix-snes-ex69'
* origin/knepley/fix-snes-ex69:
Plex: Updated test output - I am now hating this shit
SNES ex12: Updated test output
SNES ex62: Set name of solution vector - Update test output
move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3
SNES ex12: Added alternate test file
Plex: Lots of fixups for test output
SNES ex69: Tests should not run for single
TAO+Plex: Updated test output
SNES ex69: Updated test output
SNES ex12: Updated test output
SNES ex12: Put check for small errors back in
SNES ex62: Need another test filter
SNES ex62: Need another test filter
SNES ex62: Fixed pressure null space creation
Conflicts:
src/snes/examples/tutorials/output/ex62_0.out
src/snes/examples/tutorials/output/ex62_1.out
src/snes/examples/tutorials/output/ex62_10.out
src/snes/examples/tutorials/output/ex62_11.out
src/snes/examples/tutorials/output/ex62_12.out
src/snes/examples/tutorials/output/ex62_13.out
src/snes/examples/tutorials/output/ex62_14.out
src/snes/examples/tutorials/output/ex62_15.out
src/snes/examples/tutorials/output/ex62_16.out
src/snes/examples/tutorials/output/ex62_17.out
src/snes/examples/tutorials/output/ex62_18.out
src/snes/examples/tutorials/output/ex62_19.out
src/snes/examples/tutorials/output/ex62_2.out
src/snes/examples/tutorials/output/ex62_20.out
src/snes/examples/tutorials/output/ex62_20_parmetis.out
src/snes/examples/tutorials/output/ex62_21.out
src/snes/examples/tutorials/output/ex62_22.out
src/snes/examples/tutorials/output/ex62_23.out
src/snes/examples/tutorials/output/ex62_24.out
src/snes/examples/tutorials/output/ex62_25.out
src/snes/examples/tutorials/output/ex62_26.out
src/snes/examples/tutorials/output/ex62_27.out
src/snes/examples/tutorials/output/ex62_28.out
src/snes/examples/tutorials/output/ex62_29.out
src/snes/examples/tutorials/output/ex62_2d_p3_0.out
src/snes/examples/tutorials/output/ex62_2d_p3_1.out
src/snes/examples/tutorials/output/ex62_3.out
src/snes/examples/tutorials/output/ex62_4.out
src/snes/examples/tutorials/output/ex62_43.out
src/snes/examples/tutorials/output/ex62_44.out
src/snes/examples/tutorials/output/ex62_45.out
src/snes/examples/tutorials/output/ex62_46.out
src/snes/examples/tutorials/output/ex62_5.out
src/snes/examples/tutorials/output/ex62_6.out
src/snes/examples/tutorials/output/ex62_7.out
src/snes/examples/tutorials/output/ex62_8.out
src/snes/examples/tutorials/output/ex62_9.out
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|
| 534d39fe | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'
* origin/tisaac/feature-dmfield: (56 commits)
Plex: Updated test output for DMLabel change
DMLabel: make empty ISs strides
DMSwarm:
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'
* origin/tisaac/feature-dmfield: (56 commits)
Plex: Updated test output for DMLabel change
DMLabel: make empty ISs strides
DMSwarm: silence static analyzer warning
PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm
SNES ex69: Updated test output
SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables
SNES ex69: Removed special partition
SNES ex69: Fixed null space creation - Null space locks its vectors
PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM
DMField: default initialization of variable
PetscFE: fix integration for openCL
PetscFEGeomComplete(): correct normal vector in 2D.
DMField: c++/complex fixes
DMField: empty processor protections
DMField regression test fixes
DMLabel: try to keep stride IS as stride IS as much as possible
DMPlexRefine(): create depth before hybrid-bounded label
DMField: documentation of interface
DMField: implement shell
DMPlex: rename newly created label
...
Conflicts:
src/dm/dt/interface/dtfe.c
src/snes/examples/tutorials/ex69.c
src/snes/utils/dmplexsnes.c
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|
| 5fa8d5ab | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/knepley/fix-fe-vector-spaces'
* origin/knepley/fix-fe-vector-spaces: (21 commits)
SNES ex12: Updated test output
Plex ex8: Updated test output
Plex ex7: Up
Merge remote-tracking branch 'origin/knepley/fix-fe-vector-spaces'
* origin/knepley/fix-fe-vector-spaces: (21 commits)
SNES ex12: Updated test output
Plex ex8: Updated test output
Plex ex7: Updated test output
Plex ex5: Updated test output
Plex ex4: Updated test output
Plex ex3: Updated test output
Plex ex20: Updated test output
Plex ex19: Updated test output
Plex ex18: Updated test output
Plex ex17: Updated test output
Plex ex16: Updated test output
Plex ex13: Updated test output
Plex ex12: Updated test output
Plex ex1: Updated test output
DualSpace: Interaction of branches
FAS: Added viewing during coarse correction
Plex+FEM: Fixes for reorg of vector spaces which I missed - Fixed DMPlexComputeInterpolatorNested() field offsets - Fixed DMPlexComputeInjector()
PetscFE: Fixed viewers - Added PetscDualSpace viewer - Can view FE without quadrature
PC: Added some options and documentation for BJacobi, ASM, Richardson
Plex: Fixes for ASCII viewer
...
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|
| c9ece94a | 13-Apr-2018 |
Matthew G. Knepley <knepley@gmail.com> |
Merge remote-tracking branch 'origin/knepley/fix-fe-bd-integral'
* origin/knepley/fix-fe-bd-integral:
Plex+SNES: Fix BdResidual - Use DMPlexGetSubpoint() for aux closure, in case it is a boundary
Merge remote-tracking branch 'origin/knepley/fix-fe-bd-integral'
* origin/knepley/fix-fe-bd-integral:
Plex+SNES: Fix BdResidual - Use DMPlexGetSubpoint() for aux closure, in case it is a boundary mesh - Be careful about Plex conversion
FE: Fixed boundary integration - Allow auxiliary dm to be a different dimension, need dimAux and different tabulation
FE: Small confusion about topological vs coordinate dimension
PetscDS: The u_x array must have size dimEmbed because the derivatives are a function of the coordinate dim, not topological dim
Plex: Added DMPlexGetSubpoint() - This returns the point in a submesh corresponding to some point in the original mesh - This replaces custom code in projection
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