plex - OpenGrok history log for /petsc/src/dm/impls/plex

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4e8061f6	17-Mar-2017	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/dalcinl/parmetis-vertex_weights' plexpartition.c /petsc/src/ksp/ksp/impls/bcgs/bcgs.c /petsc/src/ksp/ksp/impls/bcgs/fbcgs/fbcgs.c /petsc/src/ksp/ksp/impls/cg/cg.c /petsc/src/ksp/ksp/impls/cg/groppcg/groppcg.c /petsc/src/ksp/ksp/impls/cg/pipecg/pipecg.c /petsc/src/ksp/ksp/impls/cg/pipecgrr/pipecgrr.c /petsc/src/ksp/ksp/impls/cheby/cheby.c /petsc/src/ksp/ksp/impls/cr/cr.c /petsc/src/ksp/ksp/impls/cr/pipecr/pipecr.c /petsc/src/ksp/ksp/impls/fcg/fcg.c /petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c /petsc/src/ksp/ksp/impls/fetidp/fetidp.c /petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c /petsc/src/ksp/ksp/impls/gmres/gmres.c /petsc/src/ksp/ksp/impls/rich/rich.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/snes/examples/tests/ex4.c /petsc/src/snes/examples/tests/makefile /petsc/src/snes/examples/tests/output/ex4_1.out /petsc/src/snes/linesearch/impls/bt/linesearchbt.c /petsc/src/snes/linesearch/impls/l2/linesearchl2.c
3e98d00b	17-Mar-2017	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/balay/fix-redundant-decls-warnings-master' /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/cxxlibs.py /petsc/config/BuildSystem/config/packages/fiat.py /petsc/config/BuildSystem/config/packages/flibs.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hwloc.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/libpng.py /petsc/config/BuildSystem/config/packages/mathlib.py /petsc/config/BuildSystem/config/packages/med.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/ml.py /petsc/config/BuildSystem/config/packages/openmp.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/BuildSystem/config/packages/saws.py /petsc/config/BuildSystem/config/packages/scalapack.py /petsc/config/BuildSystem/config/packages/scientificpython.py /petsc/config/BuildSystem/config/packages/ssl.py /petsc/config/BuildSystem/config/packages/sundials.py /petsc/config/BuildSystem/config/packages/tchem.py /petsc/config/BuildSystem/config/packages/tetgen.py /petsc/config/BuildSystem/config/packages/valgrind.py /petsc/config/BuildSystem/config/packages/xSDKTrilinos.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/configure.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py /petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py /petsc/config/examples/arch-linux-gcc-ifc-cmplx.py /petsc/config/examples/arch-linux-pkgs-cxx-mlib.py /petsc/config/examples/arch-linux-pkgs-gcov.py /petsc/config/examples/arch-moab.py /petsc/config/examples/arch-osx-10.6-cxx-cmplx-pkgs-dbg.py /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matorderimpl.h /petsc/include/petsc/private/petscdsimpl.h /petsc/include/petscblaslapack.h /petsc/include/petscblaslapack_stdcall.h /petsc/include/petscdm.h /petsc/include/petscds.h /petsc/include/petscksp.h /petsc/include/petscpc.h /petsc/include/petsctao.h /petsc/include/petscvec.h /petsc/include/petscviewer.h /petsc/src/dm/dt/interface/dtds.c plex.c plexfem.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmregall.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/impls/gmres/gmres.c /petsc/src/ksp/ksp/impls/lsqr/lsqr_converged.c /petsc/src/ksp/ksp/impls/lsqr/lsqr_monitor.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/ksp/interface/itregis.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.h /petsc/src/ksp/pc/impls/is/pcis.h /petsc/src/ksp/pc/impls/spai/petscspai.h /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/impls/aij/mpi/crl/mcrl.c /petsc/src/mat/impls/aij/mpi/csrperm/mpicsrperm.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c /petsc/src/mat/impls/aij/mpi/mpiov.c /petsc/src/mat/impls/aij/mpi/mpiptap.c /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/aij/seq/aijfact.c /petsc/src/mat/impls/aij/seq/crl/crl.c /petsc/src/mat/impls/aij/seq/csrperm/csrperm.c /petsc/src/mat/impls/aij/seq/inode2.c /petsc/src/mat/impls/baij/mpi/mmbaij.c /petsc/src/mat/impls/baij/mpi/mpibaij.h /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/dense/mpi/mpidense.h /petsc/src/mat/impls/sbaij/mpi/mmsbaij.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.h /petsc/src/mat/interface/matregis.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/utils/overlapsplit.c /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/impls/fas/fasfunc.c /petsc/src/snes/impls/ngmres/anderson.c /petsc/src/snes/impls/ngmres/snesngmres.c /petsc/src/snes/interface/snesregi.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/error/errtrace.c /petsc/src/sys/objects/ftn-custom/zstart.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/hash.h /petsc/src/tao/interface/taosolverregi.c /petsc/src/ts/characteristic/interface/mocregis.c /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/impls/shared/shvec.c /petsc/src/vec/vec/interface/vector.c
9270b71f	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex19: Now working in parallel - Added partition visualization field - Added some tests /petsc/config/BuildSystem/config/packages/pragmatic.py examples/tests/ex19.c
8713909f	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Update interface and fix boundary labels for Pragmatic plexadapt.c
8083afff	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex: Awful fix for partitioner options - I cannot see a better way to Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex: Awful fix for partitioner options - I cannot see a better way to solve this right now Plex: Bug fixes for shell partitioning show more ... plexpartition.c
13fef8f3	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Awful fix for partitioner options - I cannot see a better way to solve this right now plexpartition.c
c717d290	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Bug fixes for shell partitioning plexpartition.c
48faa39a	17-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex ex12: Fix partitioning - Now give load balancing DM prefix "lb_" s Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex ex12: Fix partitioning - Now give load balancing DM prefix "lb_" so I can change partitioners - Do not force test partition in load balancing Plex: Now set partitioner type from options in GetPartitioner() instead of on creation - Also set it from options with DM, but this is probably useless because most DM are partitioned before SetFromOptions Plex: Add DMPlexSetOptionsPrefix() - This gives the prefix to the partitioner show more ... /petsc/include/petscdmplex.h examples/tests/ex12.c plexcreate.c plexpartition.c
b479c6a5	17-Mar-2017	Barry Smith <bsmith@mcs.anl.gov>	remove outdated __FUNCT__ definition Commit-type: style-fix plexgeometry.c
6bb5bdaa	16-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex12: Fix partitioning - Now give load balancing DM prefix "lb_" so I can change partitioners - Do not force test partition in load balancing examples/tests/ex12.c
4f3833ea	16-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Now set partitioner type from options in GetPartitioner() instead of on creation - Also set it from options with DM, but this is probably useless because most DM are partitioned before SetFromO Plex: Now set partitioner type from options in GetPartitioner() instead of on creation - Also set it from options with DM, but this is probably useless because most DM are partitioned before SetFromOptions show more ... plexcreate.c plexpartition.c
a9074c1e	16-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Add DMPlexSetOptionsPrefix() - This gives the prefix to the partitioner /petsc/include/petscdmplex.h plexcreate.c
ea7989f7	16-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex19: Create mesh overlap before adaptation - Put coords in metric for checking examples/tests/ex19.c
bbc23918	16-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Take overlap generation out of Adapt() for now plexadapt.c
f172c304	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex ex12: Added logging stages Plex ex1: Added logging stages TS e Merge branch 'knepley/feature-plex-tests-new' into knepley/feature-plex-pragmatic-parallel * knepley/feature-plex-tests-new: Plex ex12: Added logging stages Plex ex1: Added logging stages TS ex18: Indicate broken tests TS ex11: Indicate broken test SNES ex62: Added SIMPLE tests SNES ex12: Removed old tests Plex: Fixing test descriptions update to latest hypre tag on github fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19 MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS. replace use/mention of depreciated -log_summary in many places add extchem.py which was written years ago but never put in the distribution (hence it is broken). refix 96a2602 as it gives parsing erros with gmakegentest.py from scott/test-harness-altfiles petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes PetscCMPLX: assume type punning is safe show more ... /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/include/petscmath.h /petsc/include/petsctime.h /petsc/src/benchmarks/PLogEvent.c /petsc/src/benchmarks/benchmarkBatch.py /petsc/src/benchmarks/makefile /petsc/src/benchmarks/results/benchmarks.html /petsc/src/benchmarks/results/performance_arco1 /petsc/src/benchmarks/results/performance_cfd_2_10 /petsc/src/benchmarks/results/performance_medium examples/tests/ex1.c examples/tests/ex12.c examples/tests/ex9.c examples/tests/makefile examples/tutorials/ex2.c /petsc/src/docs/tao_tex/tutorials/nersc/exercises11.txt /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/faq.html /petsc/src/docs/website/documentation/tutorials/HandsOnExercise.html /petsc/src/ksp/ksp/examples/tests/ex30.c /petsc/src/ksp/ksp/examples/tests/ex38.c /petsc/src/ksp/ksp/examples/tests/ex40.c /petsc/src/ksp/ksp/examples/tests/ex48.c /petsc/src/ksp/ksp/examples/tests/ex49.c /petsc/src/ksp/ksp/examples/tests/ex50.c /petsc/src/ksp/ksp/examples/tests/scripts/ex10_blu /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/examples/tutorials/ex3.c /petsc/src/mat/examples/tests/ex102.c /petsc/src/mat/examples/tutorials/ex1.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/output/ex62_pc_simple.out /petsc/src/snes/examples/tutorials/output/ex62_pc_simplec.out /petsc/src/sys/classes/random/examples/tutorials/ex1.c /petsc/src/sys/examples/tutorials/ex1.c /petsc/src/sys/examples/tutorials/ex2.c /petsc/src/sys/examples/tutorials/ex3.c /petsc/src/sys/examples/tutorials/ex4.c /petsc/src/sys/examples/tutorials/ex4f.F /petsc/src/sys/examples/tutorials/ex4f90.F90 /petsc/src/sys/logging/plog.c /petsc/src/sys/logging/utils/eventlog.c /petsc/src/sys/logging/utils/stagelog.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/time/cputime.c /petsc/src/ts/examples/tests/ex5.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex3.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/examples/tutorials/ex2.c /petsc/src/ts/examples/tutorials/ex21.c /petsc/src/ts/examples/tutorials/ex3.c /petsc/src/ts/examples/tutorials/ex4.c /petsc/src/ts/examples/tutorials/ex5.c /petsc/src/ts/examples/tutorials/ex6.c /petsc/src/ts/examples/tutorials/extchem.c /petsc/src/ts/examples/tutorials/extchem.py /petsc/src/vec/vec/utils/tagger/examples/tutorials/ex1.c
a166d259	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus * knepley/fix-plex-example-logging: (151 commits) Plex ex12: Added logging stages Plex ex1: Added logging stages Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-torus * knepley/fix-plex-example-logging: (151 commits) Plex ex12: Added logging stages Plex ex1: Added logging stages update to latest hypre tag on github fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19 MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS. replace use/mention of depreciated -log_summary in many places add extchem.py which was written years ago but never put in the distribution (hence it is broken). petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes Minor fixes for tchem examples due to changes in PETSc infrastructure update webpage about API changes add help menu for MatCreateSubMatricesMPI() PetscCMPLX: assume type punning is safe rename struct Mat_SubMat -> Mat_SubSppt add a little information to the manual about using tchem rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual need to protect the \ passed on the makefile on my Mac Bib: Updated ref update src/mat/examples/tests/output/ex23_#.out rename MatGetSubMat -> MatCreateSubMat Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES ... Conflicts: src/dm/impls/plex/examples/tests/ex1.c src/dm/impls/plex/examples/tests/ex12.c show more ... /petsc/bin/maint/generateetags.py /petsc/bin/petsc_conf.py /petsc/bin/win32fe/win32fe.exe /petsc/bin/win32fe/win32feutils.dll /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/alquimia.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/p4est.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/pflotran.py /petsc/config/BuildSystem/config/packages/strumpack.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/arch.py /petsc/config/configure.py /petsc/config/example_template.py /petsc/config/petsc_harness.sh /petsc/gmakefile /petsc/include/petsc/finclude/petscis.h /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/finclude/petscvec.h /petsc/include/petsc/private/isimpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscis.h /petsc/include/petscmat.h /petsc/include/petscmath.h /petsc/include/petscoptions.h /petsc/include/petsctao.h /petsc/include/petsctime.h /petsc/include/petscvec.h /petsc/lib/petsc/conf/bfort-petsc.txt /petsc/makefile /petsc/src/benchmarks/PLogEvent.c /petsc/src/benchmarks/benchmarkBatch.py /petsc/src/benchmarks/makefile /petsc/src/benchmarks/results/benchmarks.html /petsc/src/benchmarks/results/performance_arco1 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851d29aa	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new * knepley/fix-plex-example-logging: (151 commits) Plex ex12: Added logging stages Plex ex1: Added logging stag Merge branch 'knepley/fix-plex-example-logging' into knepley/feature-plex-tests-new * knepley/fix-plex-example-logging: (151 commits) Plex ex12: Added logging stages Plex ex1: Added logging stages update to latest hypre tag on github fix 'inf' vs 'Inf' diff wrt vec_vec_utils_tagger_tutorials-ex1_8,9,18,19 MatSetOption(mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE) no longer applies to zero values set or added to the matrix diagonal, they are now not ignored and are included in the matrix nonzero structure. This is useful for Jacobians passed to TS. replace use/mention of depreciated -log_summary in many places add extchem.py which was written years ago but never put in the distribution (hence it is broken). petsc4py: update to snapshot with MatGetSubMatrices -> MatCreateSubMatrices etc API changes Minor fixes for tchem examples due to changes in PETSc infrastructure update webpage about API changes add help menu for MatCreateSubMatricesMPI() PetscCMPLX: assume type punning is safe rename struct Mat_SubMat -> Mat_SubSppt add a little information to the manual about using tchem rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual need to protect the \ passed on the makefile on my Mac Bib: Updated ref update src/mat/examples/tests/output/ex23_#.out rename MatGetSubMat -> MatCreateSubMat Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES ... 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f8be1459	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex12: Added logging stages examples/tests/ex12.c examples/tests/makefile
a5d0cc93	15-Mar-2017	Matthew G. 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7963a6fb	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex19: Add another Pragmatic test examples/tests/ex19.c
cc29c497	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Use new parallel Pragmatic interface plexadapt.c
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c7155d14	15-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex: Fixing test descriptions examples/tests/ex1.c examples/tests/ex9.c examples/tutorials/ex2.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/output/ex62_31.out /petsc/src/ts/examples/tutorials/ex18.c
f45c9589	14-Mar-2017	Stefano Zampini <stefano.zampini@gmail.com>	DMPlex: fix gmsh reader for periodic meshes Still some problems with the GMSH format plexgmsh.c
5d2d25cb	14-Mar-2017	Matthew G. Knepley <knepley@gmail.com>	Plex ex19: Added a parallel test examples/tests/ex19.c
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