| 82169f37 | 24-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixed function header |
| e646963f | 24-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-point-location' into knepley/feature-snes-deflation
* knepley/feature-plex-point-location:
Plex: Removed unused vars, Initialized vars
Plex: Fixed signature fo
Merge branch 'knepley/feature-plex-point-location' into knepley/feature-snes-deflation
* knepley/feature-plex-point-location:
Plex: Removed unused vars, Initialized vars
Plex: Fixed signature for PetscGridHashGetEnclosingBox()
Plex ex17: Tests point location - One test which locates cell centroids right now
Plex: Replaced brute force search with grid hashing for point location
Plex: Now every Plex has a PetscGridHash
PetscGridHash: Added a simple regular point location data structure
DMLabel: Added DMLabelConvertToSection() - This routine converts a label to a Section+IS
Doc+Plex: Fixed function name
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| 3e8c22cd | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-snes-deflation
* master: (206 commits)
Bib: Added ref
fix the output file for the ts example ex20adj
Bugfix: setting post-step function in ztsf.c
f
Merge branch 'master' into knepley/feature-snes-deflation
* master: (206 commits)
Bib: Added ref
fix the output file for the ts example ex20adj
Bugfix: setting post-step function in ztsf.c
fix makefile format error with 'all-legacy'
doc: handle missing dev.html in a release tarball
doc: add in petscistypes.h to doc sourcefile list
Increase patchlevel to 3.6.1
update some example output files
Doc+Vec: Fixed VecSetValuesBlocked() Reported by: Shao-Ching Huang <huangsc@gmail.com>
clarify that PETSc's "thread safe" code only works with OpenMP
allow adjoint integration over split time intervals
DT: Goddman it. Why are people stepping on my commits
Bib: Added ref
fix the bug in the endpoint version of discrete adjoint theta and correct the affected example outputs
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
fix: buggy change in 33da457b864643cfcac2768e47197c286471a5a4
updated petscthreads.html with information on thread per object model
fix for ex56
removed the dead links to threads.html
send petsc repository messages to Karl no longer from his mcs address
...
Conflicts:
config/builder.py
src/dm/impls/plex/examples/tests/ex3.c
src/dm/impls/plex/examples/tests/makefile
src/dm/impls/plex/makefile
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| 386c4fe8 | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex5: Added test output |
| 4798fa3c | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex2: Added empty output |
| 314f9e6d | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex4: Added missing test output |
| e42fe749 | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex1: Fixed test output
- CGNS test was broken
- Fluent mesh is missing |
| 123dfe75 | 22-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-plex-point-location
* master: (202 commits)
Bib: Added ref
fix makefile format error with 'all-legacy'
Increase patchlevel to 3.6.1
update some exa
Merge branch 'master' into knepley/feature-plex-point-location
* master: (202 commits)
Bib: Added ref
fix makefile format error with 'all-legacy'
Increase patchlevel to 3.6.1
update some example output files
Doc+Vec: Fixed VecSetValuesBlocked() Reported by: Shao-Ching Huang <huangsc@gmail.com>
clarify that PETSc's "thread safe" code only works with OpenMP
allow adjoint integration over split time intervals
DT: Goddman it. Why are people stepping on my commits
Bib: Added ref
fix the bug in the endpoint version of discrete adjoint theta and correct the affected example outputs
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
fix: buggy change in 33da457b864643cfcac2768e47197c286471a5a4
updated petscthreads.html with information on thread per object model
fix for ex56
removed the dead links to threads.html
send petsc repository messages to Karl no longer from his mcs address
Plex: Fix for all the hidebound morons living with c89. Good luck doing computational science in the 80s!
DT: Fix tanh-sinh - Removed wrong var
SNES: Added SNESQN types to Fortran Reported-by: Chris Bradley <c.bradley@auckland.ac.nz>
Bib: More refs
...
Conflicts:
config/builder.py
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| 53f1a433 | 21-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-c89'
* knepley/fix-plex-c89:
Plex: Fix for all the hidebound morons living with c89. Good luck doing computational science in the 80s! |
| 0b0615df | 21-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'mesgarnejad/feature-plex-globaltonatural'
* mesgarnejad/feature-plex-globaltonatural:
Plex ex15: This requires HDF5
Plex ex15: Fixed variable type
Plex: Fixed variable init
Ple
Merge branch 'mesgarnejad/feature-plex-globaltonatural'
* mesgarnejad/feature-plex-globaltonatural:
Plex ex15: This requires HDF5
Plex ex15: Fixed variable type
Plex: Fixed variable init
Plex ex15: Added test for reading and writing HDF5 in native format
Vec: Straighten out defines for VECOP
DM: Reminder to handle g2n in DMCreateSubDM()
Plex ex15: One test of g2n working
Plex: Fixed global to natural mapping creation
Plex: When creating g2n map, must use parallel DM
PetscSF: Corrected bug in PetscSFCreateInverseSF() for sparse leaves - Have to index over entire leaf space
PetscSection: PetscSectionCreateGlobalSection() now allows the user to keep local offsets - This is useful is all you want is to filter out the constrained points
Plex: Create the global to natural mapping during distribution if the flag is set
Plex: Added viewing in native format using the global to natural mapping
Plex: Added global to natural ordering support - The natural ordering is the one you have before distribution - Added DMPlexCreateGlobalToNaturalSF() - Added DMPlexGlobalToNaturalBegin/End() - Added DMPlexNaturaToGloballBegin/End()
SF: Added PetscSFCreateEmbeddedLeafSF() - This name sucks, but it subsets on leaves instead of roots
DM: Added an SF for the global to local mapping and a flag to enable its construction - Added DMGet/SetUseNatural() - Should hook this up to DMDA
SF: Added Fortran binding for SFView()
DM: Automatic Fortran binding should work for DMCreateSubDM()
SF: Added PetscSFCompose()
SF: Added PetscSFCreateFromZero()
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| b28003e6 | 20-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Using a refinement function |
| 06807f53 | 19-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fix for all the hidebound morons living with c89. Good luck doing computational science in the 80s! |
| 179bb521 | 14-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex15: This requires HDF5 |
| be7a662b | 14-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixed arguments to pointwise function DMPlexComputeL2Diff() |
| abba2064 | 13-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex15: Fixed variable type |
| 2c4c0c81 | 13-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixed variable init |
| deaa1708 | 12-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex15: Added test for reading and writing HDF5 in native format |
| 2534f3bc | 11-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex15: One test of g2n working |
| e5b44f4f | 11-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixed global to natural mapping creation |
| 0c1f158b | 11-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: When creating g2n map, must use parallel DM |
| 15b58121 | 11-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: PetscSectionCreateGlobalSection() now allows the user to keep local offsets
- This is useful is all you want is to filter out the constrained points |
| db66d908 | 08-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into mesgarnejad/feature-plex-globaltonatural
* master: (111 commits)
add filters for website tests that removes warnings about MPI type tag mismatches due to const
remove
Merge branch 'master' into mesgarnejad/feature-plex-globaltonatural
* master: (111 commits)
add filters for website tests that removes warnings about MPI type tag mismatches due to const
remove Peter from blame-email list.
don't warn about MPI const long * versus long long *
Configure: Added GMP an MPRF - These allow arbitrary precision arithmetic
SNES ex69: SolCx finally works - Fixed order of parameters - Made different versions of pointwise functions
SNES ex69: Fixed bug where SolKx and SolCx have different numbers of parameters
SNES ex69: Small bug fixes - Initialize coordinates for SolCx - Fixed declaration length
I believe this call on line 357: ierr = DMSetFromOptions(dau); should actually set `dak`. The DM `dau` is already set on line 349.
SNESSolve_KSPOnly() did not compute function at new solution unless monitoring is turned on but SNESSolve_FAS() internals assume that each subsnes solve it calls does compute the new function value so broke when -fas_levels_snes_monitor was not turned on but -fas_levels_snes_type kspmonitor was used
Have SNESVIGetInactiveSet return the *actual* current inactive set.
One now passes the nullspace in the matrix for a linear system as the first Amat argument to KSPSetOperators, SNESSetOperators, TSSetIJacobian() not the second pmat argument
Remove change documentation of Removed MatMFFDAddNullSpace() just use MatSetNullSpace() as it is now backported in maint (36.html)
MatMFFD doesn't need to have its own null space management cherry-picked from 39601f4 (barry/remove-matmffdaddnullspace/master)
Removed trailing '\\' in the authors line.
add note to PetscOptionsInsertFile() that it should not be used for PETSc wide options
Add Fortran stub for SNESSetUpdate()
improve manual page slightly for clarity
PCGASM.
Basic PCGASM description added to manual.
add DMDAVecGet/RestoreArrayReadF90()
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| 1318edbe | 08-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Removed unused vars, Initialized vars |
| 1c6dfc3e | 08-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex: Fixed signature for PetscGridHashGetEnclosingBox() |
| 958f2a02 | 07-Jul-2015 |
Matthew G. Knepley <knepley@gmail.com> |
Plex ex17: Tests point location
- One test which locates cell centroids right now |