History log of /petsc/src/dm/impls/plex/ (Results 4576 – 4600 of 5874)
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f6ac7a6a08-Jan-2015 Michael Lange <michael.lange@imperial.ac.uk>

Plex-Gmsh: Loosen the version requirement for .msh files


plexgmsh.c
0448d9bb07-Jan-2015 Michael Lange <michael.lange@imperial.ac.uk>

Plex-Gmsh: Add custom Fortran wrapper for DMPlexCreateGmshFromFile


/petsc/config/PETSc/Configure.py
ftn-custom/makefile
ftn-custom/zplexgmsh.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/tao/examples/tutorials/ex1.c
c056d0d305-Jan-2015 Shri Abhyankar <abhyshr@mcs.anl.gov>

Merge branch 'shri/dmplex-add-mat-localtoglobalmapping'


/petsc/bin/maint/PetscStaticFunctionCandidates.py
/petsc/bin/maint/generatefortranstubs.py
/petsc/bin/petscpythonscripts/PetscBinaryIO.py
/petsc/bin/petscpythonscripts/PetscBinaryIO_tests.py
/petsc/bin/petscpythonscripts/petsc_conf.py
/petsc/bin/petscpythonscripts/petsc_gen_xdmf.py
/petsc/bin/petscpythonscripts/petsclogformat.py
/petsc/bin/petscpythonscripts/petscnagupgrade.py
/petsc/conf/install.py
/petsc/conf/rules
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/mkl_cpardiso.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/configure.py
/petsc/config/examples/arch-ms-msvc2012-intelmpi-cudano-nomumps-cpardiso-indexes64-mklilp64-debug.py
/petsc/include/finclude/ftn-custom/petscmat.h90
/petsc/include/mpiuni/mpi.h
/petsc/include/petsc-private/kspimpl.h
/petsc/include/petsc-private/snesimpl.h
/petsc/include/petscdmmoab.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscsnes.h
/petsc/share/petsc/matlab/PetscBinaryWrite.m
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/contrib/fun3d/comp/flow.c
/petsc/src/contrib/fun3d/comp/ginput.faces
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
plex.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/ksp/ksp/examples/tests/output/ex11_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex35.cxx
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_4.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_5.out
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/impls/aij/mpi/makefile
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/makefile
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/objects/options.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tutorials/ex35.cxx
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/ts.c
a9a51d2c26-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Fixed compiler warnings


/petsc/config/builder.py
/petsc/include/petsc-private/dmdaimpl.h
/petsc/include/petscdmda.h
/petsc/include/petscksp.h
/petsc/include/petscsnes.h
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadestroy.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/gr2.c
plexgenerate.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex45.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tests/output/ex45_1.out
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitfuncf.c
/petsc/src/ksp/ksp/interface/ftn-custom/zxonf.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/xmon.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/objects/options.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/vec/interface/vector.c
457e2cda26-Dec-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/fix-hdf5'


/petsc/include/petscviewerhdf5.h
/petsc/src/dm/impls/da/gr2.c
plexhdf5.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/rich/rich.c
/petsc/src/ksp/ksp/impls/specest/specest.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/tfs/gs.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijfact2.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/utils/vecio.c
382d80ec26-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'mlange/refactor-plex-distribute'

* mlange/refactor-plex-distribute: (31 commits)
Plex: MS compilers do not allow declarations in the middle of a block
DMLabel: Add DMLabelMakeAllVa

Merge branch 'mlange/refactor-plex-distribute'

* mlange/refactor-plex-distribute: (31 commits)
Plex: MS compilers do not allow declarations in the middle of a block
DMLabel: Add DMLabelMakeAllValid_Private
Plex ex12: Add fixed re-partitioning for load balance test
DMLabel: Validate/build point arrays per stratum
Plex: Remove obsolete partitioning routines
Plex: Fix deadlock in DMPlexCreatePointNumbering
Plex: Fix dynamic check for one-to-all pattern in DMPlexMigrate
Plex: Add missing header entries
Plex ex12: Enable L2-overlap test and switch to ascii_info_detail
Plex ex1: Fix overlap tests and switch to ascii_info_detail
Plex: Fix and clean up DMPlexCreatePointSF
Plex: Correctly restore closure in DMPlexPartitionLabelClosure
Plex: Let SegBuffer allocate partition graph to avoid memory corruption
Plex ex12: Enabling parallel re-partitioning test via scii_latex output
Plex: Enabling parallel re-partitioning via DMPlexDistribute
Plex ex12: Add new test for parallel re-partitioning
Plex: Add DMPlexCreatePointSF utility
Plex: Fix overlap point SF generation
Plex: Build complete overlap label and stratify resulting SF.
Plex: Create parallel partitions that ParMetis accepts
...

Conflicts:
config/builder.py
src/dm/impls/plex/examples/tests/output/ex1_13.out
src/dm/impls/plex/examples/tests/output/ex1_14.out
src/dm/impls/plex/plexlabel.c
src/dm/impls/plex/plexpartition.c

show more ...


/petsc/config/builder.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdmplex.h
examples/tests/ex1.c
examples/tests/ex12.c
examples/tests/output/ex12_1.out
examples/tests/output/ex12_2.out
examples/tests/output/ex12_3.out
examples/tests/output/ex12_4.out
examples/tests/output/ex12_5.out
examples/tests/output/ex12_6.out
examples/tests/output/ex12_7.out
examples/tests/output/ex1_13.out
examples/tests/output/ex1_14.out
plex.c
plexdistribute.c
plexlabel.c
plexpartition.c
/petsc/src/vec/is/utils/vsectionis.c
d83387d826-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-refinement-check'

* knepley/fix-plex-refinement-check:
Plex Refinement: Fix check of topological dimension which was embedding dimension
Plex: Refinement only work

Merge branch 'knepley/fix-plex-refinement-check'

* knepley/fix-plex-refinement-check:
Plex Refinement: Fix check of topological dimension which was embedding dimension
Plex: Refinement only works for interpolated meshes

show more ...


/petsc/include/petsc-private/isimpl.h
/petsc/include/petscfv.h
/petsc/include/petscfvtypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscsnes.h
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/fdda.c
plexrefine.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/color/impls/jp/jp.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/color/impls/natural/natural.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/fdaij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/f90-custom/makefile
/petsc/src/snes/utils/f90-custom/zdmplexsnesf90.c
/petsc/src/vec/is/is/utils/ftn-custom/ziscoloringf.c
/petsc/src/vec/is/is/utils/iscoloring.c
20fa7edd26-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'icl/lawrence/dmplex-1d-refinement'

* icl/lawrence/dmplex-1d-refinement:
PetscFE: Use enum for cell refiner
Plex Refinment: Fixed error check
Plex Refinment: Fixed coordinate crea

Merge branch 'icl/lawrence/dmplex-1d-refinement'

* icl/lawrence/dmplex-1d-refinement:
PetscFE: Use enum for cell refiner
Plex Refinment: Fixed error check
Plex Refinment: Fixed coordinate creation
Plex Refinment: Replaced ints with enums
DMPlex: support uniform refinement of intervals
DMPlex: make CellRefiner an enum rather than PetscInt

show more ...


/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petscdmplex.h
/petsc/src/dm/dt/interface/dtfe.c
plexrefine.c
/petsc/src/docs/tex/manual/part2.tex
a57030b024-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex Refinement: Fix check of topological dimension which was embedding dimension


plexrefine.c
ad23a23823-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Refinement only works for interpolated meshes


plexrefine.c
1e317b1d23-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex Refinment: Fixed error check


plexrefine.c
383c10e623-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex Refinment: Fixed coordinate creation


plexrefine.c
6c0c04f523-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex Refinment: Replaced ints with enums


plexrefine.c
860bc73223-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-orient'

* knepley/fix-plex-orient:
Plex ex5: Fault orientation has swapped


/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/PaStiX.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/SuperLU_MT.py
/petsc/config/BuildSystem/config/packages/Zoltan.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/parmetis.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/Regression.py
/petsc/config/PETSc/options/indexTypes.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/builder.py
/petsc/config/cmakeboot.py
examples/tests/output/ex5_8.out
examples/tests/output/ex5_9.out
608515f023-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-latex'

* knepley/fix-plex-latex:
Plex: Removed unused variable
Plex: Update LaTeX tests
Plex: Reorganized Latex output


examples/tests/output/ex1_13.out
examples/tests/output/ex1_14.out
examples/tests/output/ex1_17.out
examples/tests/output/ex1_18.out
examples/tests/output/ex1_2.out
examples/tests/output/ex1_5.out
examples/tests/output/ex1_9.out
plex.c
e4aa569a23-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fortran-plex-fromfile'

* knepley/fortran-plex-fromfile:
Plex: Added Fortran binding for DMPlexCreateFromFile()


/petsc/bin/pythonscripts/petsc_conf.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/include/petscerror.h
/petsc/include/petscsys.h
/petsc/src/dm/dt/interface/dtfe.c
ftn-custom/makefile
ftn-custom/zplexcreate.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/examples/tests/ex8.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_bjacobi.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_nested_gmg.out
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/tools.c
/petsc/src/mat/examples/tests/ex172.c
/petsc/src/mat/examples/tests/ex99.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex171_1.out
/petsc/src/mat/examples/tests/output/ex180_1.out
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/objects/options.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c
/petsc/src/vec/vec/interface/rvector.c
6c84453023-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: MS compilers do not allow declarations in the middle of a block


plexlabel.c
1428887c23-Dec-2014 Shri Abhyankar <abhyshr@mcs.anl.gov>

DMPLEX: Set the LocalToGlobalMapping on the matrix created by DMPlex for MatSetValuesLocal() to work.

https://www.mail-archive.com/petsc-users@mcs.anl.gov/msg23619.html


/petsc/bin/pythonscripts/petsc_conf.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/include/petscerror.h
/petsc/include/petscsys.h
/petsc/src/dm/dt/interface/dtfe.c
plex.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/examples/tests/ex8.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_bjacobi.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_nested_gmg.out
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/tools.c
/petsc/src/mat/examples/tests/ex172.c
/petsc/src/mat/examples/tests/ex99.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex171_1.out
/petsc/src/mat/examples/tests/output/ex180_1.out
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/objects/options.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c
/petsc/src/vec/vec/interface/rvector.c
bd2cb6ce22-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex ex5: Fault orientation has swapped


examples/tests/output/ex5_8.out
examples/tests/output/ex5_9.out
dc86033c22-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix leak


plexsubmesh.c
0750fff422-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Removed unused variable


plex.c
b7ab4a5019-Dec-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Update LaTeX tests


examples/tests/output/ex1_13.out
examples/tests/output/ex1_14.out
examples/tests/output/ex1_17.out
examples/tests/output/ex1_18.out
examples/tests/output/ex1_2.out
examples/tests/output/ex1_5.out
examples/tests/output/ex1_9.out
65716ca819-Dec-2014 Michael Lange <michael.lange@imperial.ac.uk>

DMLabel: Add DMLabelMakeAllValid_Private


plexlabel.c
729ab6d916-Dec-2014 Barry Smith <bsmith@mcs.anl.gov>

moved the rest of the HDF5 calls behind PetscStackCall's


/petsc/include/petscviewerhdf5.h
/petsc/src/dm/impls/da/gr2.c
plexhdf5.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/utils/vecio.c
aa0f43ce16-Dec-2014 Michael Lange <michael.lange@imperial.ac.uk>

Plex ex12: Add fixed re-partitioning for load balance test


examples/tests/ex12.c

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