History log of /petsc/src/dm/impls/plex/ (Results 4726 – 4750 of 5874)
Revision Date Author Comments
(<<< Hide modified files)
(Show modified files >>>)
cc71bff108-Aug-2014 Michael Lange <michael.lange@imperial.ac.uk>

Plex: Move cone migration into its own subroutine

17578a6508-Oct-2014 Michael Lange <michael.lange@imperial.ac.uk>

Merge branch 'knepley/feature-plex-partitioner-shell' into mlange/feature-parallel-distribute

4b56196008-Oct-2014 Michael Lange <michael.lange@imperial.ac.uk>

Merge branch 'knepley/feature-parallel-partition' into mlange/feature-parallel-distribute

Conflicts:
include/petscdmplex.h


/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/builder.py
/petsc/include/petscdmplex.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
examples/tests/ex1.c
examples/tests/ex12.c
examples/tests/output/ex12_3.out
plex.c
plexdistribute.c
plexrefine.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/index.html
/petsc/src/docs/website/publications/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex60.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/examples/tests/ex171f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/tutorials/HandsOnExercise.html
7762326408-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Partitioner+Plex: Added PetscPartitioner class
- Plex holds a PetscPartitioner
- Changed args so that PetscSections are modified, not created (also of DMPlexEnlargePartition)
- Now partition routine

Partitioner+Plex: Added PetscPartitioner class
- Plex holds a PetscPartitioner
- Changed args so that PetscSections are modified, not created (also of DMPlexEnlargePartition)
- Now partition routine takes a number of partitions instead of assuming commSize
- Added a shell partitioner intended to be used for regression testing

show more ...


/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/include/finclude/petscdmdef.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
plex.c
plexcreate.c
plexdistribute.c
plexpartition.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/index.html
/petsc/src/docs/website/publications/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex60.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/examples/tests/ex171f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/tutorials/HandsOnExercise.html
a85475f207-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex+Label: Added output flag for labels
- Meant storing labels in a struct inside Plex
- Added DMPlexGetLabelByNum()
- Added DMPlexGet/SetLabelOutput()
- Got rid of most of the mucking with the inte

Plex+Label: Added output flag for labels
- Meant storing labels in a struct inside Plex
- Added DMPlexGetLabelByNum()
- Added DMPlexGet/SetLabelOutput()
- Got rid of most of the mucking with the internal label storage

show more ...


/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdmplex.h
plex.c
plexdistribute.c
plexhdf5.c
plexlabel.c
plexreorder.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/index.html
/petsc/src/docs/website/publications/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex60.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/examples/tests/ex171f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/tutorials/HandsOnExercise.html
278397a007-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Needs custom Fortran binding

4be5e73503-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-plex-generator-args'

* knepley/feature-plex-generator-args:
Plex: Small fix
Plex: Fixed misspelling
Plex: Move generation to a separate source file, Can now speci

Merge branch 'knepley/feature-plex-generator-args'

* knepley/feature-plex-generator-args:
Plex: Small fix
Plex: Fixed misspelling
Plex: Move generation to a separate source file, Can now specify operator for mesh generators - Added DMPlexTriangleSetOptions() and DMPlexTetgenSetOptions()

Conflicts:
src/dm/impls/plex/makefile

show more ...

1c57f3ca03-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix distribution for meshes without coordinates

606ac3a501-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Small fix

dbdd18ae01-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex ex12: Added test from Michael

b0a623aa01-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Added methods to support distributed overlap calculation
- Added DMPlexCreateTwoSidedProcessSF()
- Added DMPlexDistributeOwnership()
- Added DMPlexCreateOverlap()

1e8fc25d01-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: Added DMPlexDistributeFieldIS()
- Small doc fix

963fc26a01-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

Plex: DMPlexCreateProcessSF() is now documented and the outputs are optional
- The root space is also correct

b21b854201-Oct-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: update libraries for ex3

DMPlexSNESComputeJacobianFEM() is in snes

8040c1f301-Oct-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: move DMPlexProjectionFunction() back to libdm

When I first implemented hanging constraints, I moved
DMPlexProjectFunction() to libksp because I used a global solve to
determine the values of d

Plex: move DMPlexProjectionFunction() back to libdm

When I first implemented hanging constraints, I moved
DMPlexProjectFunction() to libksp because I used a global solve to
determine the values of dofs on an anchor point that is not in the
closure of any cell. This was a hack, as those values do not require a
global solve, but can be determined with functionals evaluated on the
anchor point: -dm_plex_max_projection_height > 0 allows functionals to
be evaluated on these anchor points, so the global solve is no longer
necessary.

To see the effect, you can modify the scripts to run ex3 in
src/dm/impls/plex/examples/tests: set -dm_plex_max_projection_height 0
in the runex3_nonconforming_{simplex,tensor}_{2,3} examples, and
projecting a function fails.

I did not move DMPlexProjectField() back into libdm because it evaluates
field jets, not just field values, and doing this on non-cells isn't
straightforward.

show more ...

1a46ebf601-Oct-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: use -dm_plex_max_projection_height in non-conforming examples

This removes the need for a global solve when projecting to global

910c25dc01-Oct-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: fixed a typo in DMPlexProjectFunctionLocal()

28dbe44201-Oct-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: added DMPlexComputeProjection3Dto1D_Internal()

Uses Frisvad's basis completion,
http://www.imm.dtu.dk/~jerf/papers/abstracts/onb.html

31383a9b30-Sep-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: fixes to recent merge

ee2838f630-Sep-2014 Toby Isaac <tisaac@ices.utexas.edu>

Merge branch 'tisaac/feature-fe-geom-dim' into tisaac/plex-flexible-projection

Use the new PetscFECellGeom

Conflicts:
include/petscdmplex.h
include/petscfe.h
src/dm/impls/plex/plexfem.c


/petsc/bin/maint/generateetags.py
/petsc/bin/pythonscripts/petsc_gen_xdmf.py
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/packages/Chaco.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/parmetis.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/utilities/featureTestMacros.py
/petsc/config/PETSc/utilities/missing.py
/petsc/config/builder.py
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/dtimpl.h
/petsc/include/petsc-private/petscdsimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/petscfvimpl.h
/petsc/include/petsc-private/taoimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/include/petscfv.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/share/petsc/datafiles/meshes/grid_c.cgns
/petsc/src/benchmarks/streams/makefile
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/examples/tutorials/ex4.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/moab/dmmoab.cxx
examples/tests/ex3.c
examples/tests/makefile
examples/tests/output/ex3_constraints.out
examples/tests/output/ex3_nonconforming_simplex_2.out
examples/tests/output/ex3_nonconforming_simplex_3.out
examples/tests/output/ex3_nonconforming_tensor_2.out
examples/tests/output/ex3_nonconforming_tensor_3.out
examples/tests/output/ex3_p1_quad_2.out
examples/tests/output/ex3_p1_quad_5.out
examples/tests/output/ex3_p2_quad_3.out
examples/tests/output/ex3_p2_quad_5.out
examples/tests/output/ex3_q1_quad_2.out
examples/tests/output/ex3_q1_quad_5.out
examples/tests/output/ex3_q2_quad_3.out
examples/tests/output/ex3_q2_quad_5.out
examples/tutorials/ex2.c
examples/tutorials/ex4f90.F
makefile
plex.c
plexbc.c
plexcgns.c
plexcreate.c
plexdistribute.c
plexfem.c
plexgeometry.c
plexpartition.c
plexpreallocate.c
plexsubmesh.c
plextree.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tao_tex/manual/addsolver.tex
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex22.c
/petsc/src/ksp/ksp/examples/tests/ex39.c
/petsc/src/ksp/ksp/examples/tests/ex44.c
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex15f.F
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/ex54f.F
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/examples/tutorials/ex60.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cg/cgne/cgne.c
/petsc/src/ksp/ksp/impls/cr/cr.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/ksp/utils/makefile
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/cp/cp.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gamg/tools.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/is/pcis.h
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/shell/ftn-custom/zshellpcf.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/examples/tests/ex112.c
/petsc/src/mat/examples/tests/ex120f.F
/petsc/src/mat/examples/tests/ex128.c
/petsc/src/mat/examples/tests/ex143.c
/petsc/src/mat/examples/tests/ex148.c
/petsc/src/mat/examples/tests/ex149.c
/petsc/src/mat/examples/tests/ex150.c
/petsc/src/mat/examples/tests/ex153.c
/petsc/src/mat/examples/tests/ex155.c
/petsc/src/mat/examples/tests/ex157.c
/petsc/src/mat/examples/tests/ex158.c
/petsc/src/mat/examples/tests/ex170.c
/petsc/src/mat/examples/tests/ex171.c
/petsc/src/mat/examples/tests/ex30.c
/petsc/src/mat/examples/tests/ex9.c
/petsc/src/mat/examples/tests/ex97.c
/petsc/src/mat/examples/tutorials/ex9.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/impls/submat/submat.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/mat/order/spectral.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/multequal.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex73f90t.F90
/petsc/src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out
/petsc/src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/impls/win32/win32draw.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/gpcg/gpcg.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/examples/tutorials/ex1.c
/petsc/src/tao/interface/fdtest.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex1.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c
/petsc/src/ts/examples/tutorials/eimex/allen_cahn.c
/petsc/src/ts/examples/tutorials/eimex/ct_vdp_imex.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex16.c
/petsc/src/ts/examples/tutorials/ex19.c
/petsc/src/ts/examples/tutorials/ex20.c
/petsc/src/ts/examples/tutorials/ex24.c
/petsc/src/ts/examples/tutorials/ex40.c
/petsc/src/ts/examples/tutorials/ex41.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/ts/examples/tutorials/power_grid/ex1.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex5.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmlocalts.c
/petsc/src/ts/utils/dmplexts.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/utils/projection.c
/petsc/tutorials/python/ex1.c
/petsc/tutorials/python/ex1f.F
7a1a1bd430-Sep-2014 Toby Isaac <tisaac@ices.utexas.edu>

PetscFE: added dim, dimEmbed to PetscFECellGeom

This is to allow PetscDualSpaceApply() to be used in situations where
a cell is embedded in a higher spatial dimension.

40b72c3529-Sep-2014 Toby Isaac <tisaac@ices.utexas.edu>

Merge branch 'tisaac/thplex'

This merge brings in related work in the following areas:
- Added a local constraint matrix to DM (see DMSetDefaultConstraints())
- Added point-to-anchor-point constrain

Merge branch 'tisaac/thplex'

This merge brings in related work in the following areas:
- Added a local constraint matrix to DM (see DMSetDefaultConstraints())
- Added point-to-anchor-point constraints in DMPlex (see
DMPlexSetAnchors()), which build on the DM constraints
- Added hierarchically-constrained points to DMPlex (see
DMPlexSetReferenceTree(), DMPlexSetTree()), which builds on the anchor
constraints
- Tests for these constraints in src/dm/impls/plex/examples/ex3.c (try
runex3_* examples in that directory)
- Added quadrature order (see PetscQuadratureGet/SetOrder()) (work by
Matt Knepley)
- Added default return values for DMGetCoordinateDim() (defaults to
DMGetDimension())

Conflicts:
include/petscdmplex.h
src/dm/dt/interface/dt.c
src/dm/impls/plex/examples/tests/ex3.c
src/dm/impls/plex/makefile
src/dm/impls/plex/plexfem.c

show more ...

d8463f0029-Sep-2014 Toby Isaac <tisaac@ices.utexas.edu>

Plex: fix quadrature order for runex3_constraints

5b95d43e28-Sep-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-cgns-bc'

* knepley/fix-plex-cgns-bc:
Plex ex2: Added DM viewing and fixed builder runs - Added a test mesh
Plex+CGNS: Now read in boundary conditions - All this do

Merge branch 'knepley/fix-plex-cgns-bc'

* knepley/fix-plex-cgns-bc:
Plex ex2: Added DM viewing and fixed builder runs - Added a test mesh
Plex+CGNS: Now read in boundary conditions - All this does is mark the constrained points in a label

show more ...

413a66b328-Sep-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-fe-fv-hybrid'

* knepley/feature-fe-fv-hybrid: (43 commits)
PetscFE: Small fixes
Plex+SNES: Volumes are PetscReal
Plex+SNES: Missing declaration
TS ex11: Remove

Merge branch 'knepley/feature-fe-fv-hybrid'

* knepley/feature-fe-fv-hybrid: (43 commits)
PetscFE: Small fixes
Plex+SNES: Volumes are PetscReal
Plex+SNES: Missing declaration
TS ex11: Remove unused var
Plex+SNES+TS: Complete reorganization of residual evaluation - Now both FE and FV examples use the same method, but there are a bunch of switches which should be eliminated - There is a confusion about IFunction and RHS, but I think they can both be in one function - Added DMPlexSNESGetGeometryFVM() and DMPlexSNESGetGradientFVM() - Added DMPlexGet/RestoreCellFields() and DMPlexGet/RestoreFaceFields() and DMPlexGet/RestoreFaceGeometry() - I think that FV geometry caching needs to be redone - Added DMPlexReconstructGradients_Internal() - Added DMPlexComputeBdResidual_Internal() which does not work for FV - Replaced DMPlexComputeResidualFEM_Internal() with DMPlexComputeResidual_Internal()
Plex: Added DMPlexInsertBoundaryValues() - Unified FE and FV boundary values
Plex: DMPlexProjectFunctionLableLocal() gets discretizations from the DM now
Plex: Added DMPlexComputeGradientFVM()
PetscDS: Fix up some functions to work for both FV and FE
PetscFV: Change PetscFVIntegrateRHSFunction() to get info from PetscDS
TS ex11: There is only one field in our current paradigm - We would need to split Riemann solvers for multiple fields right now
Plex+TS: Remove use of computeGradients in favor of check for dmGrad
TS ex11: Updated interface calls
Plex+TS: Change DMPlexTSGetGradientDM() to automatically construct the gradient info, DMPlexTSSetRHSFunctionLocal() can now be replaced by the DMTS version - Remove unnecessary declarations
Plex+SNES: Add missing declaration
Plex+FE: Removed all use of PetscCellGeometry, Changed FE integration to use PetscFECellGeom
DMSNES+Plex: Added DMPlexSNESGetGeometryFEM() to cache geometry
PetscDualSpace: Remove use of PetscCellGeometry in PetscDualSpaceApply() - Fixed up calls to it for projection into spaces
DMDA: Remove use of PetscCellGeometry in DMDAProjectFunctionLocal()
Plex: Added DMPlexComputeGeometryFEM() and PetscFECellGeom structure
...

show more ...


/petsc/config/BuildSystem/config/packages/Chaco.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/parmetis.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/petscdsimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/petscfvimpl.h
/petsc/include/petsc-private/taoimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscfe.h
/petsc/include/petscfv.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscsnes.h
/petsc/include/petscts.h
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/examples/tutorials/ex4.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/moab/dmmoab.cxx
examples/tests/ex3.c
makefile
plex.c
plexbc.c
plexfem.c
plexgeometry.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tao_tex/manual/addsolver.tex
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex22.c
/petsc/src/ksp/ksp/examples/tests/ex39.c
/petsc/src/ksp/ksp/examples/tests/ex44.c
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex15f.F
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/ex54f.F
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/examples/tutorials/ex60.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cg/cgne/cgne.c
/petsc/src/ksp/ksp/impls/cr/cr.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/cp/cp.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gamg/tools.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/is/pcis.h
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/examples/tests/ex112.c
/petsc/src/mat/examples/tests/ex120f.F
/petsc/src/mat/examples/tests/ex128.c
/petsc/src/mat/examples/tests/ex143.c
/petsc/src/mat/examples/tests/ex148.c
/petsc/src/mat/examples/tests/ex149.c
/petsc/src/mat/examples/tests/ex150.c
/petsc/src/mat/examples/tests/ex153.c
/petsc/src/mat/examples/tests/ex155.c
/petsc/src/mat/examples/tests/ex157.c
/petsc/src/mat/examples/tests/ex158.c
/petsc/src/mat/examples/tests/ex170.c
/petsc/src/mat/examples/tests/ex171.c
/petsc/src/mat/examples/tests/ex30.c
/petsc/src/mat/examples/tests/ex9.c
/petsc/src/mat/examples/tests/ex97.c
/petsc/src/mat/examples/tutorials/ex9.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/impls/submat/submat.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/mat/order/spectral.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/multequal.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex73f90t.F90
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/impls/win32/win32draw.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/gpcg/gpcg.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/examples/tutorials/ex1.c
/petsc/src/tao/interface/fdtest.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex1.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c
/petsc/src/ts/examples/tutorials/eimex/allen_cahn.c
/petsc/src/ts/examples/tutorials/eimex/ct_vdp_imex.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex16.c
/petsc/src/ts/examples/tutorials/ex19.c
/petsc/src/ts/examples/tutorials/ex20.c
/petsc/src/ts/examples/tutorials/ex24.c
/petsc/src/ts/examples/tutorials/ex40.c
/petsc/src/ts/examples/tutorials/ex41.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/ts/examples/tutorials/power_grid/ex1.c
/petsc/src/ts/examples/tutorials/power_grid/ex2.c
/petsc/src/ts/examples/tutorials/power_grid/ex5.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmlocalts.c
/petsc/src/ts/utils/dmplexts.c
/petsc/tutorials/python/ex1.c
/petsc/tutorials/python/ex1f.F

1...<<181182183184185186187188189190>>...235