Plex: Remove prior stratification in DMPlexStratify()

DM+DA: Fix bounding box for periodicity
- Fix Locate to respect periodicity

CI: update to clang-format-18

Minor housekeeping

Remove some unneeded parentheses

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefan

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefano Zampini

show more ...

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

show more ...

checkbadSource: rules for PetscFunctionBegin and derivatives

DM: Inching closer to an expanded subDM specification

Document that PetscViewerGetSubViewer() is collective on the outer viewer and fix bugs.

Reported-by: Pierre Jolivet

Plex+FE: Fix bug in DMPlexComputeIntegral()
- Did not initialize local int for FV
- Initialize integrand before calling pointwise function in PetscFEIntegrate()

Plex+FVM: Fixes for integration of FV fields
- Add PetscFVCreateDualSpace()
- Fixed tabulation for multicomponent space
- Protect limiter from boundary
- Handle missing limiter
- Correct FV mass matr

Plex+FVM: Fixes for integration of FV fields
- Add PetscFVCreateDualSpace()
- Fixed tabulation for multicomponent space
- Protect limiter from boundary
- Handle missing limiter
- Correct FV mass matrix

show more ...

Fix words appearing twice in a row for no good reason

Plex: Need to catch tensor cells for higher order disc

Merge branch 'mcgurn/mpi-hang-fix' into 'main'

remove duplicate MPIU_Allreduce that was causing mpi hang

See merge request petsc/petsc!7291

remove duplicate MPIU_Allreduce that was causing mpi hang

Merge branch 'knepley/fix-plex-io-section-perm' into 'main'

Plex: Flexible creation of section permutations

See merge request petsc/petsc!7258

Plex ex55: Add test for permuted sections - Run more setup through options

Plex: Improved debugging

Plex: Allow global section to ignore the local section permutation on output

Plex: Flexible creation of section permutations
- Add createsectionpermutation to DM ops
- Change DMPlexReorderDefaultFlag to DMReorderDefaultFlag
- Move DMReorderDefaultFlag to the correct header

A

Plex: Flexible creation of section permutations
- Add createsectionpermutation to DM ops
- Change DMPlexReorderDefaultFlag to DMReorderDefaultFlag
- Move DMReorderDefaultFlag to the correct header

Apply 1 suggestion(s) to 1 file(s)

show more ...

DM: Added mesh info to CEED
- Add DMCeedComputeInfo()
- Moved DMGetPoints_Internal() to dmceed.c

Plex: Fix check

Plex: Fix boundary Jacobian assembly

Sys: add PetscOptions[Bounded|Range]Real()