| 1c41a8ca | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix signature for IFunction
- Note that the time is still not being passed down to the pointwise function |
| bd5ce809 | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Switched FEM assembly routines to use DMPlexInsertBoundaryValues() |
| a18a7fb9 | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Now DMPlexInsertBoundaryValue() only sets values for the given label
- Added DMPlexProjectFunctionLabelLocal() |
| 32720fa8 | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Now DMCreateSection() calls DMPlexLabelAddCells()
- This is necessary for FEM boundary conditions, but we do not want it for FVM so we need some control divergence here soon |
| 6cf0e42f | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added DMPlexLabelAddCells()
- Needed this for FEM BC |
| 211e18df | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-plex-hdf5' into knepley/feature-plex-bc
* knepley/feature-plex-hdf5: (61 commits)
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DM
Merge branch 'knepley/feature-plex-hdf5' into knepley/feature-plex-bc
* knepley/feature-plex-hdf5: (61 commits)
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DMPlex: Label with timestep number since we do not have times
Viewer+HDF5: Added PetscViewerHDF5HasAttribute()
TS: Set output sequence for timesteps
DMPlex: Handle output sequences - Added static to some functions
DM: Add idea of an output sequence - Added DMGet/SetOutputSequenceNumber() - Added doc for outputDM
REVERT TS: Timestep gets set into DMTS
DMPlex: Fix up HDF5 segregation
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
DMPlex: Fix HDF5 timestep handling
DMPlex: Set correct block size on HDF5 field vectors
TS: Timestep gets set into DMTS
DMTS: Added timestep
DMPlex: Fix output of fields - Corrected name - Fixed vector type
DMPlex: Return errors from HDF5 function
DMPlex+Viewer: Now output separate fields for viz - Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields - Added field type determination
Sys+HDF5: Added PetscDataType string and HDF5 support for it
IS: Fix compiler warning
IS: Forgot to protect HDF5
...
Conflicts:
config/BuildSystem/config/packages/__init__.py
src/ts/interface/ts.c
show more ...
|
| 0164434f | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-section-reorder'
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutat
Merge branch 'knepley/feature-section-reorder'
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutation argument to DMPlexCreateSection() - Need it because it calls PetscSectionSetUp()
PetscSection: Added an optional permutation for the chart - Removed the unnecessary atlasLayout - This permutation will allow people to segregate ghost unknowns at the end of their numbering, and also to get around the stratification of point numbering in Plex
show more ...
|
| b19d005e | 30-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran ch
Merge branch 'knepley/feature-section-reorder' into knepley/feature-plex-bc
* knepley/feature-section-reorder:
DMPlex: Fixed F90 binding for DMPlexCreateSection()
DMPlex exf90: Forgot Fortran change
DMPlex: Added permutation argument to DMPlexCreateSection() - Need it because it calls PetscSectionSetUp()
PetscSection: Added an optional permutation for the chart - Removed the unnecessary atlasLayout - This permutation will allow people to segregate ghost unknowns at the end of their numbering, and also to get around the stratification of point numbering in Plex
show more ...
|
| 361cb455 | 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Check for HDF5 attributes before writing them |
| d2573dda | 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Label with timestep number since we do not have times |
| b5862548 | 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Handle output sequences
- Added static to some functions |
| b136c2c9 | 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix up HDF5 segregation |
| b0372a22 | 29-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex:Fix compiler warnings |
| efef14af | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN |
| d1a54cef | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed bad declaration style |
| 4271a5b7 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix HDF5 timestep handling |
| dce6b827 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Set correct block size on HDF5 field vectors |
| 6124c6a0 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-refine-unsplit'
* knepley/fix-plex-refine-unsplit:
DMPlex: Fixed refinement of hybrid hex cells - Copied code from the tet case
DMPlex: In hybrid face construction
Merge branch 'knepley/fix-plex-refine-unsplit'
* knepley/fix-plex-refine-unsplit:
DMPlex: Fixed refinement of hybrid hex cells - Copied code from the tet case
DMPlex: In hybrid face construction, orientation was wrong for faces from unsplit edges
show more ...
|
| cec2f330 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed F90 binding for DMPlexCreateSection() |
| e00f9ccc | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix output of fields
- Corrected name
- Fixed vector type |
| 287b6d67 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Return errors from HDF5 function |
| ffe0aed0 | 28-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex+Viewer: Now output separate fields for viz
- Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields
- Added field type determination |
| 36eea54b | 27-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex exf90: Forgot Fortran change |
| f8f126e8 | 27-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added permutation argument to DMPlexCreateSection()
- Need it because it calls PetscSectionSetUp() |
| 07d7597b | 27-Mar-2014 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Added labels to HDF5 viewer/loader
- Only works in serial now |