History log of /petsc/src/dm/impls/plex/ (Results 5126 – 5150 of 5874)
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7d5cd7d508-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fixed SF created during refinement
- Remote edge had wrong starting point
- Forgot an entry for hybrid edge


/petsc/conf/rules
/petsc/include/finclude/petsckspdef.h
/petsc/include/petsc-private/snesimpl.h
plexrefine.c
/petsc/src/docs/website/documentation/tutorials/index.html
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/ts/interface/ts.c
bab9b9ec07-Feb-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'master' into balay/tao-to-petsc

Conflicts:
src/dm/examples/tests/ex42.c
src/dm/examples/tutorials/ex65dm.c
src/ksp/ksp/examples/tutorials/ex42.c
src/snes/examples/tutorials/cahn-hi

Merge branch 'master' into balay/tao-to-petsc

Conflicts:
src/dm/examples/tests/ex42.c
src/dm/examples/tutorials/ex65dm.c
src/ksp/ksp/examples/tutorials/ex42.c
src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c
src/snes/examples/tutorials/ex54.c
src/snes/examples/tutorials/ex55.c
src/snes/examples/tutorials/ex60.c
src/snes/examples/tutorials/ex61.c
src/snes/examples/tutorials/ex63.c
src/snes/examples/tutorials/ex633d_db.c
src/snes/examples/tutorials/ex64.c
src/snes/examples/tutorials/ex65.c
src/snes/examples/tutorials/ex653d.c
src/ts/examples/tutorials/ex23.c

show more ...


/petsc/bin/matlab/classes/matlabheader.h
/petsc/config/builder.py
/petsc/include/finclude/ftn-custom/petscdmda.h90
/petsc/include/finclude/petscdm.h
/petsc/include/finclude/petscdmda.h
/petsc/include/finclude/petscdmdadef.h
/petsc/include/finclude/petscdmdef.h
/petsc/include/finclude/petsckspdef.h
/petsc/include/finclude/petscsys.h
/petsc/include/mpiuni/mpi.h
/petsc/include/mpiuni/mpif.h
/petsc/include/petsc-private/dmdaimpl.h
/petsc/include/petsc-private/kspimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/src/contrib/keyes/ex15.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/ex1.c
/petsc/src/dm/examples/tests/ex10.c
/petsc/src/dm/examples/tests/ex11.c
/petsc/src/dm/examples/tests/ex12.c
/petsc/src/dm/examples/tests/ex14.c
/petsc/src/dm/examples/tests/ex15.c
/petsc/src/dm/examples/tests/ex16.c
/petsc/src/dm/examples/tests/ex17.c
/petsc/src/dm/examples/tests/ex18.c
/petsc/src/dm/examples/tests/ex19.c
/petsc/src/dm/examples/tests/ex2.c
/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/examples/tests/ex22.c
/petsc/src/dm/examples/tests/ex23.c
/petsc/src/dm/examples/tests/ex24.c
/petsc/src/dm/examples/tests/ex25.c
/petsc/src/dm/examples/tests/ex26.c
/petsc/src/dm/examples/tests/ex27.c
/petsc/src/dm/examples/tests/ex28.c
/petsc/src/dm/examples/tests/ex3.c
/petsc/src/dm/examples/tests/ex31.c
/petsc/src/dm/examples/tests/ex32.c
/petsc/src/dm/examples/tests/ex33.c
/petsc/src/dm/examples/tests/ex34.c
/petsc/src/dm/examples/tests/ex35.c
/petsc/src/dm/examples/tests/ex36.c
/petsc/src/dm/examples/tests/ex37.c
/petsc/src/dm/examples/tests/ex38.c
/petsc/src/dm/examples/tests/ex39.c
/petsc/src/dm/examples/tests/ex4.c
/petsc/src/dm/examples/tests/ex40.c
/petsc/src/dm/examples/tests/ex41.c
/petsc/src/dm/examples/tests/ex42.c
/petsc/src/dm/examples/tests/ex5.c
/petsc/src/dm/examples/tests/ex6.c
/petsc/src/dm/examples/tests/ex7.c
/petsc/src/dm/examples/tests/ex8.c
/petsc/src/dm/examples/tests/ex9.c
/petsc/src/dm/examples/tutorials/ex1.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/examples/tutorials/ex11f90.F
/petsc/src/dm/examples/tutorials/ex12.c
/petsc/src/dm/examples/tutorials/ex14.c
/petsc/src/dm/examples/tutorials/ex19.c
/petsc/src/dm/examples/tutorials/ex2.c
/petsc/src/dm/examples/tutorials/ex3.c
/petsc/src/dm/examples/tutorials/ex4.c
/petsc/src/dm/examples/tutorials/ex5.c
/petsc/src/dm/examples/tutorials/ex51.c
/petsc/src/dm/examples/tutorials/ex6.c
/petsc/src/dm/examples/tutorials/ex65dm.c
/petsc/src/dm/examples/tutorials/ex6f90.F
/petsc/src/dm/examples/tutorials/ex7.c
/petsc/src/dm/examples/tutorials/ex8.c
/petsc/src/dm/examples/tutorials/ex9.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadd.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/da/daview.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/ftn-custom/zda1f.c
/petsc/src/dm/impls/da/ftn-custom/zda2f.c
/petsc/src/dm/impls/da/ftn-custom/zda3f.c
/petsc/src/dm/impls/da/ftn-custom/zdaviewf.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
examples/tests/ex1.c
examples/tests/ex3.c
examples/tests/ex4.c
examples/tests/ex7.c
examples/tests/output/ex4_16.out
examples/tests/output/ex4_17.out
examples/tests/output/ex4_18.out
examples/tests/output/ex4_19.out
examples/tests/output/ex4_27.out
examples/tests/output/ex4_28.out
plexcreate.c
plexrefine.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/doxygen/manual/user/programming/vectors.h
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/tutorials/index.html
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/examples/tests/ex19.c
/petsc/src/ksp/ksp/examples/tests/ex21.c
/petsc/src/ksp/ksp/examples/tests/ex26.c
/petsc/src/ksp/ksp/examples/tests/ex29.c
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tests/ex35.c
/petsc/src/ksp/ksp/examples/tests/ex41.c
/petsc/src/ksp/ksp/examples/tutorials/ex14f.F
/petsc/src/ksp/ksp/examples/tutorials/ex22f.F
/petsc/src/ksp/ksp/examples/tutorials/ex25.c
/petsc/src/ksp/ksp/examples/tutorials/ex28.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex31.c
/petsc/src/ksp/ksp/examples/tutorials/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex38.c
/petsc/src/ksp/ksp/examples/tutorials/ex39.c
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex45.c
/petsc/src/ksp/ksp/examples/tutorials/ex45f.F
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/spai/ispai.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/examples/tests/ex129.c
/petsc/src/mat/examples/tests/ex96.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tests/ex11.c
/petsc/src/snes/examples/tests/ex12f.F
/petsc/src/snes/examples/tests/ex14f.F
/petsc/src/snes/examples/tests/ex15.c
/petsc/src/snes/examples/tests/ex16.c
/petsc/src/snes/examples/tests/ex5.c
/petsc/src/snes/examples/tests/ex8.c
/petsc/src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c
/petsc/src/snes/examples/tutorials/ex14.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex16.c
/petsc/src/snes/examples/tutorials/ex18.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex20.c
/petsc/src/snes/examples/tutorials/ex21.c
/petsc/src/snes/examples/tutorials/ex22.c
/petsc/src/snes/examples/tutorials/ex25.c
/petsc/src/snes/examples/tutorials/ex28.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/ex30.c
/petsc/src/snes/examples/tutorials/ex33.c
/petsc/src/snes/examples/tutorials/ex35.c
/petsc/src/snes/examples/tutorials/ex4.c
/petsc/src/snes/examples/tutorials/ex40f90.F90
/petsc/src/snes/examples/tutorials/ex46.c
/petsc/src/snes/examples/tutorials/ex47cu.cu
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/ex5.c
/petsc/src/snes/examples/tutorials/ex54.c
/petsc/src/snes/examples/tutorials/ex55.c
/petsc/src/snes/examples/tutorials/ex58.c
/petsc/src/snes/examples/tutorials/ex5f.F
/petsc/src/snes/examples/tutorials/ex5f.h
/petsc/src/snes/examples/tutorials/ex5f90.F
/petsc/src/snes/examples/tutorials/ex5f90t.F
/petsc/src/snes/examples/tutorials/ex60.c
/petsc/src/snes/examples/tutorials/ex61.c
/petsc/src/snes/examples/tutorials/ex63.c
/petsc/src/snes/examples/tutorials/ex633d_db.c
/petsc/src/snes/examples/tutorials/ex64.c
/petsc/src/snes/examples/tutorials/ex65.c
/petsc/src/snes/examples/tutorials/ex653d.c
/petsc/src/snes/examples/tutorials/ex67.c
/petsc/src/snes/examples/tutorials/ex7.c
/petsc/src/snes/examples/tutorials/ex73f90t.F90
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex62_33.out
/petsc/src/snes/examples/tutorials/output/ex62_34.out
/petsc/src/snes/examples/tutorials/output/ex62_35.out
/petsc/src/snes/examples/tutorials/output/ex62_36.out
/petsc/src/snes/examples/tutorials/output/ex62_40.out
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/fsrc/somefort.F
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
/petsc/src/tao/bound/examples/tutorials/plate2f.F
/petsc/src/tao/leastsquares/examples/tutorials/makefile
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/ts/characteristic/impls/da/slda.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/examples/tests/ex25.c
/petsc/src/ts/examples/tests/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex3.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex4.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex12.c
/petsc/src/ts/examples/tutorials/ex13.c
/petsc/src/ts/examples/tutorials/ex14.c
/petsc/src/ts/examples/tutorials/ex15.c
/petsc/src/ts/examples/tutorials/ex17.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/ex21.c
/petsc/src/ts/examples/tutorials/ex22.c
/petsc/src/ts/examples/tutorials/ex22f.F
/petsc/src/ts/examples/tutorials/ex22f_mf.F90
/petsc/src/ts/examples/tutorials/ex23.c
/petsc/src/ts/examples/tutorials/ex25.c
/petsc/src/ts/examples/tutorials/ex26.c
/petsc/src/ts/examples/tutorials/ex27.c
/petsc/src/ts/examples/tutorials/ex29.c
/petsc/src/ts/examples/tutorials/ex2f.F
/petsc/src/ts/examples/tutorials/ex2f.h
/petsc/src/ts/examples/tutorials/ex34.c
/petsc/src/ts/examples/tutorials/ex4.c
/petsc/src/ts/examples/tutorials/ex7.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex6.c
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex8.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/vec/is/utils/vsectionis.c
0a6ba04006-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Added DMRefineHierarchy() and DMCoarsen() support
- DMRefineHierarchy() sets coarseMesh, so DMRefine() does not cause the initial mesh to keep on living
- DMCoarsen() returns coarseMesh
- The

DMPlex: Added DMRefineHierarchy() and DMCoarsen() support
- DMRefineHierarchy() sets coarseMesh, so DMRefine() does not cause the initial mesh to keep on living
- DMCoarsen() returns coarseMesh
- These are handled by DMSetFromOptions(), which I had to move

show more ...


plex.c
plexcreate.c
3913d7c806-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Added coarseMesh member to Plex
- This will be used by DMCoarsen()
- It will be set during refinement


/petsc/config/builder.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/examples/tests/ex21.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/sys/objects/inherit.c
81906ebd04-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-hybrid-tet-refinement'

* knepley/fix-hybrid-tet-refinement:
DMPlex ex4: Fixed test output for hybrid tet refinement
DMPlex: Fix for 3d hybrid simplicial refinement - Fi

Merge branch 'knepley/fix-hybrid-tet-refinement'

* knepley/fix-hybrid-tet-refinement:
DMPlex ex4: Fixed test output for hybrid tet refinement
DMPlex: Fix for 3d hybrid simplicial refinement - Fixed the order in which hybrid faces are attached to the cell
DMPlex: Fix hybrid 2d simplex refinement - If hybrid end face is inverted, flip the new hybrid cells created - Fix supports for this flip
DMPlex ex4: Added test for hybrid quads
DMPlex: Added in hybrid quad refinement - Strange merge in the middle for some reason
DMPlex: Cleanup and fix for SF construction in refinement - Had wrong numbering for vertices in quads
DMPlex: Bug fix for hybrid tet refinement - The new edges for hybrid faces do not depend on the cap face orientation - This happens because we are not attaching hybrid faces in an order dependent on the cap face orientation. Maybe we should.
DMPlex: Bug fix for hybrid tet refinement - The orientation that we get for hybrid faces depends on both the edge and face orientation - This happens because we are not attaching hybrid faces in an order dependent on the cap face orientation. Maybe we should.

show more ...


/petsc/config/builder.py
/petsc/include/petscdmplex.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
examples/tests/ex4.c
examples/tests/output/ex4_16.out
examples/tests/output/ex4_17.out
examples/tests/output/ex4_18.out
examples/tests/output/ex4_19.out
examples/tests/output/ex4_27.out
examples/tests/output/ex4_28.out
plexrefine.c
/petsc/src/ksp/ksp/examples/tests/ex21.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
fbf5b48303-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-periodic-mesh'

* knepley/feature-periodic-mesh:
Matt moved DMDA_BOUNDARY.. to DM_BOUNDARY... but did not fix ex2f.F includes
DM Fortran examples: fix petscdm.h -> f

Merge branch 'knepley/feature-periodic-mesh'

* knepley/feature-periodic-mesh:
Matt moved DMDA_BOUNDARY.. to DM_BOUNDARY... but did not fix ex2f.F includes
DM Fortran examples: fix petscdm.h -> finclude/petscdm.h
DMPlex: Fixed markers on periodic boundary
DM examples: include petscdm.h in examples that use DM_BOUNDARY_*
DMBoundary: fix line length for Fortran
DMPlex: Now DMPlexCreateHexBox() can have a Mobius topology using DM_BOUNDARY_TWIST
DM: Moved DMDABoundaryTypes to DMBoundaryTypes - Changed the enum values as well - Changed docs and updated Changes - Updated examples
DMPlex: DMPlexCreateHexBoxMesh() now allows periodicity - Changed declaration and uses - DMPlexCreateSquareMesh() now allows periodicity - Works with refinement

Conflicts:
src/dm/impls/plex/plexcreate.c
src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c

show more ...


/petsc/bin/matlab/classes/matlabheader.h
/petsc/include/finclude/ftn-custom/petscdmda.h90
/petsc/include/finclude/petscdm.h
/petsc/include/finclude/petscdmda.h
/petsc/include/finclude/petscdmdadef.h
/petsc/include/finclude/petscdmdef.h
/petsc/include/petsc-private/dmdaimpl.h
/petsc/include/petsc-private/kspimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/src/contrib/keyes/ex15.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/ex1.c
/petsc/src/dm/examples/tests/ex10.c
/petsc/src/dm/examples/tests/ex11.c
/petsc/src/dm/examples/tests/ex12.c
/petsc/src/dm/examples/tests/ex14.c
/petsc/src/dm/examples/tests/ex15.c
/petsc/src/dm/examples/tests/ex16.c
/petsc/src/dm/examples/tests/ex17.c
/petsc/src/dm/examples/tests/ex18.c
/petsc/src/dm/examples/tests/ex19.c
/petsc/src/dm/examples/tests/ex2.c
/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/examples/tests/ex22.c
/petsc/src/dm/examples/tests/ex23.c
/petsc/src/dm/examples/tests/ex24.c
/petsc/src/dm/examples/tests/ex25.c
/petsc/src/dm/examples/tests/ex26.c
/petsc/src/dm/examples/tests/ex27.c
/petsc/src/dm/examples/tests/ex28.c
/petsc/src/dm/examples/tests/ex3.c
/petsc/src/dm/examples/tests/ex31.c
/petsc/src/dm/examples/tests/ex32.c
/petsc/src/dm/examples/tests/ex33.c
/petsc/src/dm/examples/tests/ex34.c
/petsc/src/dm/examples/tests/ex35.c
/petsc/src/dm/examples/tests/ex36.c
/petsc/src/dm/examples/tests/ex37.c
/petsc/src/dm/examples/tests/ex38.c
/petsc/src/dm/examples/tests/ex39.c
/petsc/src/dm/examples/tests/ex4.c
/petsc/src/dm/examples/tests/ex40.c
/petsc/src/dm/examples/tests/ex41.c
/petsc/src/dm/examples/tests/ex42.c
/petsc/src/dm/examples/tests/ex5.c
/petsc/src/dm/examples/tests/ex6.c
/petsc/src/dm/examples/tests/ex7.c
/petsc/src/dm/examples/tests/ex8.c
/petsc/src/dm/examples/tests/ex9.c
/petsc/src/dm/examples/tutorials/ex1.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/examples/tutorials/ex11f90.F
/petsc/src/dm/examples/tutorials/ex12.c
/petsc/src/dm/examples/tutorials/ex14.c
/petsc/src/dm/examples/tutorials/ex19.c
/petsc/src/dm/examples/tutorials/ex2.c
/petsc/src/dm/examples/tutorials/ex3.c
/petsc/src/dm/examples/tutorials/ex4.c
/petsc/src/dm/examples/tutorials/ex5.c
/petsc/src/dm/examples/tutorials/ex51.c
/petsc/src/dm/examples/tutorials/ex6.c
/petsc/src/dm/examples/tutorials/ex65dm.c
/petsc/src/dm/examples/tutorials/ex6f90.F
/petsc/src/dm/examples/tutorials/ex7.c
/petsc/src/dm/examples/tutorials/ex8.c
/petsc/src/dm/examples/tutorials/ex9.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadd.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/da/daview.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/ftn-custom/zda1f.c
/petsc/src/dm/impls/da/ftn-custom/zda2f.c
/petsc/src/dm/impls/da/ftn-custom/zda3f.c
/petsc/src/dm/impls/da/ftn-custom/zdaviewf.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
examples/tests/ex1.c
examples/tests/ex3.c
examples/tests/ex7.c
plexcreate.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/doxygen/manual/user/programming/vectors.h
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex14.c
/petsc/src/ksp/ksp/examples/tests/ex19.c
/petsc/src/ksp/ksp/examples/tests/ex26.c
/petsc/src/ksp/ksp/examples/tests/ex29.c
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tests/ex35.c
/petsc/src/ksp/ksp/examples/tests/ex41.c
/petsc/src/ksp/ksp/examples/tutorials/ex14f.F
/petsc/src/ksp/ksp/examples/tutorials/ex22f.F
/petsc/src/ksp/ksp/examples/tutorials/ex25.c
/petsc/src/ksp/ksp/examples/tutorials/ex28.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex31.c
/petsc/src/ksp/ksp/examples/tutorials/ex32.c
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex38.c
/petsc/src/ksp/ksp/examples/tutorials/ex39.c
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex45.c
/petsc/src/ksp/ksp/examples/tutorials/ex45f.F
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/examples/tests/ex129.c
/petsc/src/mat/examples/tests/ex96.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tests/ex11.c
/petsc/src/snes/examples/tests/ex12f.F
/petsc/src/snes/examples/tests/ex14f.F
/petsc/src/snes/examples/tests/ex15.c
/petsc/src/snes/examples/tests/ex16.c
/petsc/src/snes/examples/tests/ex5.c
/petsc/src/snes/examples/tests/ex8.c
/petsc/src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c
/petsc/src/snes/examples/tutorials/ex14.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex16.c
/petsc/src/snes/examples/tutorials/ex18.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex20.c
/petsc/src/snes/examples/tutorials/ex21.c
/petsc/src/snes/examples/tutorials/ex22.c
/petsc/src/snes/examples/tutorials/ex25.c
/petsc/src/snes/examples/tutorials/ex28.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/ex30.c
/petsc/src/snes/examples/tutorials/ex33.c
/petsc/src/snes/examples/tutorials/ex35.c
/petsc/src/snes/examples/tutorials/ex4.c
/petsc/src/snes/examples/tutorials/ex40f90.F90
/petsc/src/snes/examples/tutorials/ex46.c
/petsc/src/snes/examples/tutorials/ex47cu.cu
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/ex5.c
/petsc/src/snes/examples/tutorials/ex54.c
/petsc/src/snes/examples/tutorials/ex55.c
/petsc/src/snes/examples/tutorials/ex58.c
/petsc/src/snes/examples/tutorials/ex5f.F
/petsc/src/snes/examples/tutorials/ex5f.h
/petsc/src/snes/examples/tutorials/ex5f90.F
/petsc/src/snes/examples/tutorials/ex5f90t.F
/petsc/src/snes/examples/tutorials/ex60.c
/petsc/src/snes/examples/tutorials/ex61.c
/petsc/src/snes/examples/tutorials/ex63.c
/petsc/src/snes/examples/tutorials/ex633d_db.c
/petsc/src/snes/examples/tutorials/ex64.c
/petsc/src/snes/examples/tutorials/ex65.c
/petsc/src/snes/examples/tutorials/ex653d.c
/petsc/src/snes/examples/tutorials/ex67.c
/petsc/src/snes/examples/tutorials/ex7.c
/petsc/src/snes/examples/tutorials/ex73f90t.F90
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex62_33.out
/petsc/src/snes/examples/tutorials/output/ex62_34.out
/petsc/src/snes/examples/tutorials/output/ex62_35.out
/petsc/src/snes/examples/tutorials/output/ex62_36.out
/petsc/src/snes/examples/tutorials/output/ex62_40.out
/petsc/src/ts/characteristic/impls/da/slda.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/examples/tests/ex25.c
/petsc/src/ts/examples/tests/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex3.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex4.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex12.c
/petsc/src/ts/examples/tutorials/ex13.c
/petsc/src/ts/examples/tutorials/ex14.c
/petsc/src/ts/examples/tutorials/ex15.c
/petsc/src/ts/examples/tutorials/ex17.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/ex21.c
/petsc/src/ts/examples/tutorials/ex22.c
/petsc/src/ts/examples/tutorials/ex22f.F
/petsc/src/ts/examples/tutorials/ex22f_mf.F90
/petsc/src/ts/examples/tutorials/ex23.c
/petsc/src/ts/examples/tutorials/ex25.c
/petsc/src/ts/examples/tutorials/ex26.c
/petsc/src/ts/examples/tutorials/ex27.c
/petsc/src/ts/examples/tutorials/ex29.c
/petsc/src/ts/examples/tutorials/ex2f.F
/petsc/src/ts/examples/tutorials/ex2f.h
/petsc/src/ts/examples/tutorials/ex34.c
/petsc/src/ts/examples/tutorials/ex4.c
/petsc/src/ts/examples/tutorials/ex7.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/power_grid/ex6.c
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex8.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9bus.c
/petsc/src/vec/is/utils/vsectionis.c
3e86960503-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix compiler warning


/petsc/include/petscsys.h
plexvtu.c
/petsc/src/ksp/pc/impls/spai/ispai.c
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/ts/impls/implicit/sundials/sundials.c
26492d9103-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Documentation and declaration for creation functions


/petsc/include/petscdmplex.h
/petsc/include/petscsys.h
/petsc/src/dm/impls/da/gr2.c
plexcreate.c
/petsc/src/mat/examples/tests/ex18.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex18_0.out
/petsc/src/mat/examples/tests/output/ex18_1.out
/petsc/src/mat/examples/tests/output/ex18_10.out
/petsc/src/mat/examples/tests/output/ex18_11.out
/petsc/src/mat/examples/tests/output/ex18_12.out
/petsc/src/mat/examples/tests/output/ex18_13.out
/petsc/src/mat/examples/tests/output/ex18_14.out
/petsc/src/mat/examples/tests/output/ex18_2.out
/petsc/src/mat/examples/tests/output/ex18_3.out
/petsc/src/mat/examples/tests/output/ex18_4.out
/petsc/src/mat/examples/tests/output/ex18_5.out
/petsc/src/mat/examples/tests/output/ex18_6.out
/petsc/src/mat/examples/tests/output/ex18_7.out
/petsc/src/mat/examples/tests/output/ex18_8.out
/petsc/src/mat/examples/tests/output/ex18_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
7afc1a8b03-Feb-2014 Jed Brown <jed@jedbrown.org>

TAO: s/PETSC_NULL/NULL/ in manual

Touches a few non-TAO files.


/petsc/include/petsctao.h
/petsc/src/benchmarks/results/performance_madams
plexsubmesh.c
/petsc/src/docs/manualpages-sec/header_Tao
/petsc/src/docs/tao_tex/manual/addsolver.tex
/petsc/src/docs/tao_tex/manual/part1.tex
/petsc/src/docs/tao_tex/manual/part3.tex
/petsc/src/docs/tao_tex/manual/rosenbrock1.c
/petsc/src/docs/tao_tex/tutorials/nersc/n02.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n03.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n04.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts08.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts09.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts10.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts11.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts12.tex
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c
/petsc/src/snes/impls/ls/ls.c
/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/bound/examples/tutorials/plate2.c
/petsc/src/tao/bound/examples/tutorials/plate2f.F
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/complementarity/examples/tutorials/blackscholes.c
/petsc/src/tao/complementarity/examples/tutorials/minsurf1.c
/petsc/src/tao/constrained/examples/tutorials/maros.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/pde_constrained/examples/tutorials/elliptic.c
/petsc/src/tao/pde_constrained/examples/tutorials/hyperbolic.c
/petsc/src/tao/pde_constrained/examples/tutorials/parabolic.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf2.c
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/ts/examples/tutorials/ex20.c
/petsc/src/ts/examples/tutorials/ex30.cxx
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/vec/is/ao/examples/tests/ex3d/ex3.cxx
faae8ed602-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex4: Fixed test output for hybrid tet refinement


examples/tests/output/ex4_16.out
examples/tests/output/ex4_17.out
examples/tests/output/ex4_18.out
examples/tests/output/ex4_19.out
3b61eb6d02-Feb-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix for 3d hybrid simplicial refinement
- Fixed the order in which hybrid faces are attached to the cell


plexrefine.c
b2bbe45b02-Feb-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'master' into balay/tao-to-petsc


/petsc/bin/maint/generatefortranstubs.py
/petsc/include/finclude/ftn-custom/petscvec.h90
/petsc/include/finclude/makefile
/petsc/include/finclude/petsc.h
/petsc/include/finclude/petsctao.h
/petsc/include/finclude/petsctaodef.h
/petsc/include/petsc-private/isimpl.h
/petsc/include/petsc-private/taodmimpl.h
/petsc/include/petsc-private/taoimpl.h
/petsc/include/petsc-private/taolinesearchimpl.h
/petsc/include/petsc.h
/petsc/include/petscis.h
/petsc/include/petscmath.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petsctaodm.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petscvec.h
/petsc/src/dm/impls/da/gr2.c
examples/tests/ex9.c
makefile
plex.c
plexgeometry.c
plexindices.c
/petsc/src/docs/tao_tex/manual/abstract.tex
/petsc/src/docs/tao_tex/manual/addsolver.tex
/petsc/src/docs/tao_tex/manual/changes.tex
/petsc/src/docs/tao_tex/manual/cover.tex
/petsc/src/docs/tao_tex/manual/makefile
/petsc/src/docs/tao_tex/manual/part1.tex
/petsc/src/docs/tao_tex/manual/part2.tex
/petsc/src/docs/tao_tex/manual/part3.tex
/petsc/src/docs/tao_tex/manual/rosenbrock1.c
/petsc/src/docs/tao_tex/tutorials/nersc/n.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n01.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n03.tex
/petsc/src/docs/tao_tex/tutorials/nersc/n04.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts08.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts10.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts11.tex
/petsc/src/docs/tao_tex/tutorials/nersc/taoacts12.tex
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cg/nash/nash.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/mat/examples/tests/ex18.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex18_0.out
/petsc/src/mat/examples/tests/output/ex18_1.out
/petsc/src/mat/examples/tests/output/ex18_10.out
/petsc/src/mat/examples/tests/output/ex18_11.out
/petsc/src/mat/examples/tests/output/ex18_12.out
/petsc/src/mat/examples/tests/output/ex18_13.out
/petsc/src/mat/examples/tests/output/ex18_14.out
/petsc/src/mat/examples/tests/output/ex18_2.out
/petsc/src/mat/examples/tests/output/ex18_3.out
/petsc/src/mat/examples/tests/output/ex18_4.out
/petsc/src/mat/examples/tests/output/ex18_5.out
/petsc/src/mat/examples/tests/output/ex18_6.out
/petsc/src/mat/examples/tests/output/ex18_7.out
/petsc/src/mat/examples/tests/output/ex18_8.out
/petsc/src/mat/examples/tests/output/ex18_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/snes/examples/tests/ex10.c
/petsc/src/snes/examples/tests/ex16.c
/petsc/src/snes/examples/tests/ex8.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex54.c
/petsc/src/snes/examples/tutorials/ex55.c
/petsc/src/snes/examples/tutorials/ex58.c
/petsc/src/snes/examples/tutorials/ex60.c
/petsc/src/snes/examples/tutorials/ex61.c
/petsc/src/snes/examples/tutorials/ex63.c
/petsc/src/snes/examples/tutorials/ex633d_db.c
/petsc/src/snes/examples/tutorials/ex64.c
/petsc/src/snes/examples/tutorials/ex65.c
/petsc/src/snes/examples/tutorials/ex653d.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/impls/vi/rsaug/virsaug.c
/petsc/src/snes/impls/vi/ss/viss.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/bound/examples/tutorials/output/plate2_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_3.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_4.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_5.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_6.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_7.out
/petsc/src/tao/bound/examples/tutorials/plate2.c
/petsc/src/tao/bound/examples/tutorials/plate2f.F
/petsc/src/tao/bound/examples/tutorials/plate2f.h
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/blmvm/blmvm.h
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/bqpip/bqpip.h
/petsc/src/tao/bound/impls/gpcg/gpcg.c
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150b719b01-Feb-2014 Jed Brown <jed@jedbrown.org>

DMPlexStratify: use Function() so man pages have links


plex.c
796f034a01-Feb-2014 Jed Brown <jed@jedbrown.org>

DMPlex: fix %d for PetscInt


plexgeometry.c
ea00e70e31-Jan-2014 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix hybrid 2d simplex refinement
- If hybrid end face is inverted, flip the new hybrid cells created
- Fix supports for this flip


plexrefine.c
aaa7dc3029-Jan-2014 Barry Smith <bsmith@mcs.anl.gov>

fixed quote marks for includes to <>


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/petsc/src/tao/util/tao_util.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/examples/tutorials/ex23.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/vec/examples/tests/ex43.c
/petsc/src/vec/vec/examples/tests/ex44.c
/petsc/src/vec/vec/impls/nest/vecnest.c
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqviennacl/viennaclvecimpl.h
/petsc/src/vec/vec/interface/vecregall.c
750f0a3f21-Nov-2013 Geoffrey Irving <irving@naml.us>

Mention cell number in another DMPlexComputeCellGeometry error


plexgeometry.c
49d82ad321-Nov-2013 Geoffrey Irving <irving@naml.us>

DMPlex: Don't imply we can't handle triangles with 3D coordinates


plexgeometry.c
/petsc/src/snes/examples/tutorials/ex62.c
a55dd44421-Nov-2013 Geoffrey Irving <irving@naml.us>

DMPlexStratify: Clarify documentation


plex.c
1cd2125919-Nov-2013 Geoffrey Irving <irving@naml.us>

plex.c: Fix typo: nubmer -> number


plex.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/vec/is/utils/vsectionis.c
6322fe3329-Jan-2014 Jed Brown <jed@jedbrown.org>

DMPlex: mark two unused functions to quash -Wunused-functions


plexgeometry.c
/petsc/src/mat/impls/aij/seq/aij.c
75076a5227-Jan-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-closure-index'

* knepley/fix-plex-closure-index:
DMPlex: work around -Wmaybe-uninitialized
DMPlex: Small fix
PetscSection: Added PetscSectionGetField()
DMPlex:

Merge branch 'knepley/fix-plex-closure-index'

* knepley/fix-plex-closure-index:
DMPlex: work around -Wmaybe-uninitialized
DMPlex: Small fix
PetscSection: Added PetscSectionGetField()
DMPlex: Reorganization of closure operations - Rename DMPlexVecGetClosure_Static() —> DMPlexVecGetClosure_Depth1_Static() - Added special cases with/out fields - Removed the need for field offsets by interchanging loops over points and fields - Fixed bug where field offsets were not calculated if an array was passed in - Made all local functions static - Using SNES ex62 to verify changes, and DMPlex ex9 to time them
DMPlex: Fixed object check
DMPlex ex9: Now test VecClosure with index - Made functions static
DMPlex: Optimization for Get/SetClosure - Only need field offsets if there is more than one field
PetscSection: Change clIndices member to clPoints - Added some docs
SNES ex12: Use ViewFromOptions correctly
DMPlex: Use closure index in DMPlexVecSetClosure() and DMPlexMatSetClosure() - Moved depth 1 optimization to static function
DMPlex: Reorgnized closure index - Now index stores points and orientations instead of offsets, so it can be used for updates as well - Moved index creation to plexindices.c - Moved optimization for depth 1 mesh to a static function
DMPlex: Fixed two bugs with DMPlexCreateClosureIndex() - Must make index for entire DM chart - Need to update cloff when no fields are present

Conflicts:
src/dm/impls/plex/makefile
src/dm/impls/plex/plex.c

show more ...


/petsc/bin/petsclogformat.py
/petsc/config/PETSc/packages/viennacl.py
/petsc/include/finclude/ftn-custom/petscvec.h90
/petsc/include/petsc-private/isimpl.h
/petsc/include/petscis.h
/petsc/include/petsclog.h
/petsc/include/petscsnes.h
/petsc/include/petscts.h
/petsc/include/petscviennacl.h
examples/tests/ex9.c
makefile
plex.c
plexindices.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/examples/tutorials/ex5f90.F90
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/impls/seq/seqviennacl/viennaclvecimpl.h
/petsc/src/vec/vec/interface/vecregall.c
a9ca0dfc25-Jan-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'master' into barry/remove-big-g


/petsc/bin/petscmpiexec
/petsc/config/PETSc/Configure.py
/petsc/include/finclude/petscsysdef.h
/petsc/include/petscis.h
/petsc/include/petscsys.h
/petsc/src/dm/examples/tutorials/ex6f90.F
/petsc/src/dm/impls/da/fdda.c
f90-custom/zplexf90.c
plex.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex40.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/pc/impls/asa/asa.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/mat/examples/tests/ex16.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/sys/error/err.c
/petsc/src/sys/examples/tutorials/ex5f90.F90
/petsc/src/sys/objects/destroy.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/ts/examples/tests/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c
/petsc/src/ts/examples/tutorials/ex1.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/interface/rvector.c
fe02ba7720-Jan-2014 Jed Brown <jed@jedbrown.org>

DMPlex: work around -Wmaybe-uninitialized


/petsc/include/petscis.h
plex.c
/petsc/src/vec/is/utils/vsectionis.c
6712e2f118-Jan-2014 Barry Smith <bsmith@mcs.anl.gov>

insure that all casts to (double) are enclosed in ()


/petsc/src/dm/dt/examples/tests/ex1.c
/petsc/src/dm/impls/da/dainterp.c
plex.c
/petsc/src/ksp/ksp/examples/tests/ex22.c
/petsc/src/ksp/ksp/examples/tests/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex3.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/mat/examples/tests/ex128.c
/petsc/src/mat/examples/tests/ex96.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/bas/basfactor.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/snes/examples/tests/ex11.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex30.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/ts/examples/tutorials/eimex/allen_cahn.c
/petsc/src/ts/examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex4.c
/petsc/src/ts/examples/tutorials/ex5.c
/petsc/src/ts/examples/tutorials/ex6.c
/petsc/src/ts/examples/tutorials/ex7.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/impls/implicit/alpha/alpha.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/vec/examples/tests/ex21.c
/petsc/src/vec/vec/examples/tests/ex28.c
/petsc/src/vec/vec/examples/tutorials/ex11.c
/petsc/src/vec/vec/examples/tutorials/ex18.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/vsection.c

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