| c9fc7396 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMLabel: PetscHashIGetKeys() was made a function
- It now accepts a NULL argument |
| d80c2872 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix reordering for empty meshes |
| 711de394 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Turn off check for cells bordering a cohesive face
- In parallel, the negative side cell for a cohesive face can be on another process
- We might want to consider communicating these |
| f0113d44 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-geometry-hex'
* knepley/fix-plex-geometry-hex:
DMPlex: If “vtk” label has no cells, do not use it
DMPlex: DMPlexCreateCohesiveSubmesh() must also extract orientati
Merge branch 'knepley/fix-plex-geometry-hex'
* knepley/fix-plex-geometry-hex:
DMPlex: If “vtk” label has no cells, do not use it
DMPlex: DMPlexCreateCohesiveSubmesh() must also extract orientations
DMPlex: Add 1D code for DMPlexCheckSkeleton()
DMPlex: Cleanup code for VTK output - Removed diagnostic print - Use DMLabel interface
DMPlex: Change geometry check to support interpolated meshes - This all has to be replaced anyway
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|
| b3331239 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-hash-scaling'
* knepley/fix-hash-scaling: (25 commits)
PetscSF: Register logging events
PetscSF: Added logging
DMPlex: Bug fix for interpolated adjacency formation
Merge branch 'knepley/fix-hash-scaling'
* knepley/fix-hash-scaling: (25 commits)
PetscSF: Register logging events
PetscSF: Added logging
DMPlex: Bug fix for interpolated adjacency formation
DMPlex: Fast adjacency graph construction for interpolated meshes
DMPlex: Fixed error in new events
DMPlex: More events for distribution
DMPlex: Fixed allocation bug in reordering
DMPlex: Fixed mismatched Malloc2 in reordering
DMLabel: Split Malloc3 into Malloc2 and Malloc
Hash+DMPlex: Changed PetscHashIPut() to eliminate pass-by-ref - Jed can sleep soundly tonight
DMPlex: Use PetscHashIHasKey() to check for membership
Hash; Added PetscHashIHasKey() - PetscHashIMap does not match the documentation
DMPlex: Added simple DMLabel test
DMPlex: Fix missing restore Reported-by: Jed Brown <jedbrown@mcs.anl.gov>
DMPlex: Use DMLabelDistribute() in DMPlexDistribute()
DMPlex: Use DMLabelGetStrautmBounds() in DMPlexGetDepth/HeightStratum()
DMPlex: Added DMLabelDistribute()
DMPlex: Added DMLabelGetStratumBounds()
DMPlex: Fixed quadratic behavior of DMLabel insert - Added hash table for each label value for insertion - Added arrayValid flag which says whether array data or hash table data is valid - Convert between representations using DMLabelMakeValid_Private() and DMLabelMakeInvalid_Private() - Split up allocation of stratumValues and stratumSize/Offsets - Most functions only use the array representation, but some can use both (should probably expand this with GetStratum) - Moved the DMLabelFIlter() function
Hash: Added PetscHashIPut() and PetscHashIDel() - Removed unused variable
...
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|
| 058c2053 | 21-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-partition-overlap'
* knepley/fix-plex-partition-overlap:
DMPlex: When partitioning with overlap, make sure no points from the original partition can be owned by anot
Merge branch 'knepley/fix-plex-partition-overlap'
* knepley/fix-plex-partition-overlap:
DMPlex: When partitioning with overlap, make sure no points from the original partition can be owned by another process
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|
| 7fe31fe7 | 18-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fix merge from master |
| e9741dec | 18-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMDA: Add a matrix preallocation routine that works with PetscSection |
| cd4f0679 | 18-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'master' into knepley/feature-dmda-section
* master: (528 commits)
Doc: Fixed configure doc
Nightly summary: Added configure section.
TSSetErrorIfStepFails: fix __FUNCT__
TS: fi
Merge branch 'master' into knepley/feature-dmda-section
* master: (528 commits)
Doc: Fixed configure doc
Nightly summary: Added configure section.
TSSetErrorIfStepFails: fix __FUNCT__
TS: fix for TSGetRHSMats_Private() in the creation of the Arhs and Brhs matrices
protect logging of objects (which uses global variables) with PETSC_USE_LOG
error handler API had been previously changed but this example was not updated to new API.
DMPlex: Fixed bug in coordinate permutation
PetscSection: Doc fix for permutation
Bib: Added Top500 and fixed entry
fun3d: update PetscMallocValidate() usage
bugfix of MatCreateSeqAIJFromTriple() contributed by Nicolas Marsic <nicolas.marsic@montefiore.ulg.ac.be>
bib: rename ref with duplicate key
Webpage: Corrected '-dm_mat_type cusp' to 'dm_mat_type aijcusp'.
completed removing server code that was not removed in previous commit
removed PETSc webserver and configure package files that supported it
Allow calling MatGetBlockSize[s]() before matrix preallocation
SNESLINESEARCHBT: Set the norms when exiting early due to negligible step.
fix outdated PetscOptionsList
SNESQN: only monitor real part of dot product (fails with C++ complex)
Fix for multiple definitions in mat/color/interface/ custom fortran bindings
...
Conflicts:
config/builder.py
include/petscdmplex.h
src/dm/impls/da/dageometry.c
src/dm/impls/plex/examples/tests/ex4.c
src/dm/impls/plex/plex.c
src/dm/impls/plex/plexinterpolate.c
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|
| 057e8d19 | 18-Nov-2013 |
Michael Lange <michael.lange@imperial.ac.uk> |
DMPlex: When partitioning with overlap, make sure no points from the original partition can be owned by another process |
| 0d957afb | 17-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Bug fix for interpolated adjacency formation |
| e430e843 | 17-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fast adjacency graph construction for interpolated meshes |
| 1337e6e5 | 17-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: More events for distribution |
| 2b1860ed | 16-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed allocation bug in reordering |
| 5e894c29 | 15-Nov-2013 |
Jed Brown <jedbrown@mcs.anl.gov> |
Merge branch 'knepley/feature-plex-refine-3d' into knepley/feature-plex-hybrid-3d
These commits should have been applied to this branch in the first
place, since they are broken without earlier work
Merge branch 'knepley/feature-plex-refine-3d' into knepley/feature-plex-hybrid-3d
These commits should have been applied to this branch in the first
place, since they are broken without earlier work in
'knepley/feature-plex-hybrid-3d'.
* knepley/feature-plex-refine-3d:
DMPlex: For 3d simplicial refinement, fixes hybrid faces in support of hybrid face edges
DMPlex: For 3d simplicial refinement, fixes hybrid faces in support of interior face edges
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|
| 9d9cf9f5 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex ex4: New test output after changing refinement of hybrid cells for 3D simplex |
| d3a1cc75 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: In refinement, fixed correspondence between hybrid cells and faces |
| de65f515 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: In refinement, added GetTriEdgeInverse_Static() and GetTriSubfaceInverse_Static() |
| e869b814 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Whitespace change |
| 40c0e260 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: Fixed mismatched Malloc2 in reordering |
| 08039287 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMLabel: Split Malloc3 into Malloc2 and Malloc |
| 76d293c1 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex ex1F90: Added test of DMLabel bindings |
| f611b273 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMLabel: Moved custom bindings to zplexlabel.c
- Added DMPlexGetLabel() binding
- Added DMLabelGet/Set/ClearValue() bindings |
| 623f4348 | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: For 3d simplicial refinement, fixes hybrid faces in support of hybrid face edges |
| e515e2dd | 15-Nov-2013 |
Matthew G. Knepley <knepley@gmail.com> |
DMPlex: For 3d simplicial refinement, fixes hybrid faces in support of interior face edges |