History log of /petsc/src/dm/impls/plex/ (Results 5351 – 5375 of 5874)
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5205409619-Oct-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'jed/doc-restore-zeros-pointer'

* jed/doc-restore-zeros-pointer:
DMPlex: fix my mistake using NULL in place of (int) 0
doc: restore functions in PETSc zero their arguments

Conflict

Merge branch 'jed/doc-restore-zeros-pointer'

* jed/doc-restore-zeros-pointer:
DMPlex: fix my mistake using NULL in place of (int) 0
doc: restore functions in PETSc zero their arguments

Conflicts:
src/dm/impls/plex/plex.c

show more ...


/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dagetarray.c
plex.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex138.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex138.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/objects/inherit.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/vec/examples/tutorials/ex21.c
/petsc/src/vec/vec/examples/tutorials/ex21f90.F
/petsc/src/vec/vec/examples/tutorials/makefile
/petsc/src/vec/vec/examples/tutorials/output/ex21f90_1.out
166d9d0c18-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix bug with multiple point labels for cohesive completion


plexsubmesh.c
dcbb62e818-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Allow an increase in support size for split points in hybrid construction


plexsubmesh.c
06acb21918-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fixed compiler warning


plexinterpolate.c
c9b6e71a18-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex5: Added a new quad test
- Its broken for a good reason, need to deal with fault boundaries


/petsc/config/builder.py
examples/tests/ex5.c
20fca4b718-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex5: Added test output


examples/tests/output/ex5_10.out
feb3819718-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex4 and ex5: Added new hexahedral test


/petsc/config/builder.py
examples/tests/ex4.c
examples/tests/ex5.c
d7c8f10118-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Streamlined marking of points along a fault
- Changed iteration strategy
- Added comments


plexsubmesh.c
320ba4d218-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-doc-small'

* knepley/fix-plex-doc-small:
DMPlex: Small doc fix
Doc: typo fix for location of bagimpl.h


/petsc/.mailmap
/petsc/bin/maint/gcov.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/examples/arch-linux-complex-gcov.py
/petsc/config/examples/arch-linux-gcov.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/include/petscpc.h
/petsc/include/petscversion.h
/petsc/makefile
/petsc/src/dm/dt/interface/dtfe.c
plexsubmesh.c
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/pc/impls/makefile
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/classes/bag/makefile
/petsc/src/sys/fileio/mprint.c
31266bc018-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Small doc fix


plexsubmesh.c
/petsc/src/sys/classes/bag/makefile
/petsc/src/sys/fileio/mprint.c
dd742cf117-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Check whether default section exists to be reordered


plexreorder.c
e52b090717-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex3: Fixed multicomponent functions
- These were zero in all but the first component due to an earlier error


examples/tests/ex3.c
examples/tests/output/ex3_2.out
examples/tests/output/ex3_5.out
c2166f7617-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Cleaned up uses of DMPlexGet/SetCoordinateSection()


/petsc/include/petscdmda.h
examples/tests/ex4.c
examples/tests/ex8.c
plex.c
plexcgns.c
plexcreate.c
plexexodusii.c
plexfem.c
plexgeometry.c
plexinterpolate.c
plexsubmesh.c
plexvtk.c
/petsc/src/snes/examples/tutorials/ex31.c
/petsc/src/snes/examples/tutorials/ex72.c
/petsc/src/ts/examples/tutorials/ex11.c
c5325cd917-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex3: Added 2D Q_1 and 3D P_2 tests
- Added -simplex argument
- Uses DMDA for quad tests


/petsc/config/builder.py
examples/tests/ex3.c
examples/tests/output/ex3_10.out
examples/tests/output/ex3_11.out
examples/tests/output/ex3_15.out
examples/tests/output/ex3_16.out
examples/tests/output/ex3_17.out
examples/tests/output/ex3_9.out
37b16e2617-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff()


/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petscdmda.h
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
plexfem.c
3916af5017-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DM: Added DMGet/SetCoordinateSection()
- Removed obsolete DMPlexGetCoordinateSection()


/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscpc.h
/petsc/include/petscversion.h
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/da/dadist.c
/petsc/src/dm/impls/da/dalocal.c
plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/pc/impls/makefile
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/sys/fileio/mprint.c
29a5cbdc10-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

Compiler: Fix warnings from MPI impls which do not initialize outputs

(cherry picked from commit d892089bd4a83d5450f25ac15dd2b0a661537089)


/petsc/bin/matlab/PetscReadBinaryMatlab.m
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/packages/openmp.py
/petsc/config/PETSc/packages/pARMS.py
/petsc/config/PETSc/packages/parmetis.py
/petsc/config/PETSc/packages/scalapack.py
/petsc/config/cmakeboot.py
/petsc/include/finclude/petscmat.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petscao.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/share/petsc/datafiles/meshes/annulus-20.exo
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/gr2.c
plexvtk.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/manualpages-sec/header_PetscSF
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/index.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tests/output/ex11_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2.out
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_aijcusparse.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_mpicrl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_mpicsrperm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcrl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcsrperm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex34_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_nns.out
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/factor.h
/petsc/src/ksp/pc/impls/factor/icc/icc.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/mat/utils/getcolv.c
/petsc/src/snes/examples/tutorials/output/ex18_1.out
/petsc/src/snes/examples/tutorials/output/ex19_10.out
/petsc/src/snes/examples/tutorials/output/ex19_13.out
/petsc/src/snes/examples/tutorials/output/ex19_6.out
/petsc/src/snes/examples/tutorials/output/ex19_7.out
/petsc/src/snes/examples/tutorials/output/ex19_9.out
/petsc/src/snes/examples/tutorials/output/ex19_ngmres_fas_ms.out
/petsc/src/snes/examples/tutorials/output/ex20_1.out
/petsc/src/snes/examples/tutorials/output/ex40f90.out
/petsc/src/snes/examples/tutorials/output/ex46_1.out
/petsc/src/snes/examples/tutorials/output/ex48_4.out
/petsc/src/snes/examples/tutorials/output/ex5_1.out
/petsc/src/snes/examples/tutorials/output/ex5_2.out
/petsc/src/snes/examples/tutorials/output/ex5_3.out
/petsc/src/snes/examples/tutorials/output/ex5_4.out
/petsc/src/snes/examples/tutorials/output/ex5_5.out
/petsc/src/snes/examples/tutorials/output/ex70_0.out
/petsc/src/snes/examples/tutorials/output/ex70_1.out
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/examples/tests/ex13.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex13_1.out
/petsc/src/sys/examples/tutorials/ex11.c
/petsc/src/sys/examples/tutorials/makefile
/petsc/src/sys/fileio/fpath.c
/petsc/src/sys/fileio/ghome.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/ptype.c
/petsc/src/sys/utils/fuser.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/output/ex26_4.out
/petsc/src/vec/is/ao/impls/basic/aobasic.c
/petsc/src/vec/is/ao/impls/mapping/aomapping.c
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/ao/interface/ao.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/tutorials/HandsOnExercise.html
211f4af515-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fixed compiler warning


plexreorder.c
f72afddd14-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-examples'

* knepley/fix-plex-examples:
SNES ex62: Remove code generation
DMPlex ex7: Added missing test output
SNES ex52: Removed old Jacobian stuff, and fixed c

Merge branch 'knepley/fix-plex-examples'

* knepley/fix-plex-examples:
SNES ex62: Remove code generation
DMPlex ex7: Added missing test output
SNES ex52: Removed old Jacobian stuff, and fixed call to DMPlexProjectFunction() - Fixed calls for new element handling
SNES ex12: Added a performance profiling mode
DMPlex ex8: Fixed leak
PetscSection: Must reset the section when changing the number of fields
DMPlex ex7: Fixed test output - Corrected orientations in interpolation
DMPlex ex1: Fixed test output - Uniform refinement for quads changed
DMPlex: Fix overagressive checks

show more ...


/petsc/config/builder.py
examples/tests/ex8.c
examples/tests/output/ex1_7.out
examples/tests/output/ex1_8.out
examples/tests/output/ex7_10.out
examples/tests/output/ex7_11.out
examples/tests/output/ex7_9.out
plex.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex52.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/objects/subcomm.c
/petsc/src/vec/is/utils/vsectionis.c
2d5d10db11-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex4: Added hybrid hex tests


/petsc/config/builder.py
examples/tests/ex4.c
examples/tests/output/ex4_20.out
examples/tests/output/ex4_21.out
examples/tests/output/ex4_22.out
examples/tests/output/ex4_23.out
07df11b311-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex4: Added test with 6 tets


/petsc/config/builder.py
examples/tests/ex4.c
examples/tests/output/ex4_18.out
examples/tests/output/ex4_19.out
57bcd6bc11-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex ex4: Now check initial mesh for consistency


examples/tests/ex4.c
37a6de0111-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix bug with DMPlexLabelCohesiveComplete()
- Must mark point with correct dimension


/petsc/config/builder.py
plexsubmesh.c
4bae88c711-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix bug in uniform refinement
- Prevent negative result in subface helper function


plexrefine.c
d4622b2c11-Oct-2013 Matthew G. Knepley <knepley@gmail.com>

DMPlex: Fix bug with hybrid mesh creation
- Have to put in cell closure when cell is marked, since we check faces of neighboring cells


plexsubmesh.c

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