History log of /petsc/src/dm/impls/plex/ (Results 551 – 575 of 5874)
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ae2d839d20-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex ex33: Use internal coordinate space creation and builtin coordinate maps


tests/ex33.c
be664eb120-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Rework coordinate maps
- Add DMPlexCoordMap and some default maps
- Allow mapping to be done from DMSetFromOptions()
- Reimplemented DMPlexShearGeometry()
- Added affine fallback to DMPlexRemap

Plex: Rework coordinate maps
- Add DMPlexCoordMap and some default maps
- Allow mapping to be done from DMSetFromOptions()
- Reimplemented DMPlexShearGeometry()
- Added affine fallback to DMPlexRemapGeometry()

show more ...


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdmplextypes.h
plexcreate.c
plexgeometry.c
/petsc/src/dm/interface/dm.c
4b87bf8020-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Use same coordinate degree for refined mesh


plexrefine.c
c5aedaa320-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Improve high order drawing


plex.c
a9cd3c1820-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-fault-pc' into 'main'

Plex: Allow section reordering by default

See merge request petsc/petsc!7197


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/sectionimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscsection.h
/petsc/src/binding/petsc4py/setup.cfg
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/arraynpy.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_trimmed.out
plex.c
plexcreate.c
plexreorder.c
plexsection.c
tests/ex5.c
tests/output/ex5_tri_0_perm.out
tests/output/ex5_tri_t1_0_perm.out
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/interface/dlregissf.c
882cb04d20-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex ex5: Add tests of section reordering


tests/ex5.c
tests/output/ex5_tri_0_perm.out
tests/output/ex5_tri_t1_0_perm.out
d02c734512-Jun-2023 Matthew G. Knepley <knepley@gmail.com>

Plex: Allow section reordering by default
- Add DMPlexReorderSectionGetDefault() and DMPlexReorderSectionGetDefault()
- Allow default reordering for sections the can group points
- Bigger blocks gene

Plex: Allow section reordering by default
- Add DMPlexReorderSectionGetDefault() and DMPlexReorderSectionGetDefault()
- Allow default reordering for sections the can group points
- Bigger blocks generate a variable block size description
- Add -dm_plex_reorder_section

show more ...


/petsc/config/BuildSystem/config/packages/c2html.py
/petsc/doc/changes/dev.rst
/petsc/doc/manual/about_this_manual.rst
/petsc/doc/manual/getting_started.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/sectionimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscoptions.h
/petsc/include/petscsection.h
/petsc/include/petscsys.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_trimmed.out
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
plex.c
plexcreate.c
plexreorder.c
plexsection.c
/petsc/src/dm/tests/ex41.c
/petsc/src/dm/tests/ex9.c
/petsc/src/dm/tests/noflux_check.c
/petsc/src/dm/tests/output/ex41_1.out
/petsc/src/dm/tests/output/ex41_2.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/tests/output/noflux_check.out
/petsc/src/dm/tests/output/noflux_check_2.out
/petsc/src/dm/tests/output/noflux_check_4.out
/petsc/src/dm/tests/output/noflux_check_8.out
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesut.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/dvec2.c
/petsc/src/vec/vec/impls/seq/ftn-kernels/makefile
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
3cc88e6a09-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

DMPLEX: fix LogEvent unbalances


/petsc/config/BuildSystem/config/packages/c2html.py
/petsc/doc/manual/about_this_manual.rst
/petsc/doc/manual/getting_started.rst
/petsc/doc/manual/profiling.rst
/petsc/include/petscoptions.h
/petsc/include/petscsys.h
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
plexfem.c
/petsc/src/dm/tests/ex41.c
/petsc/src/dm/tests/ex9.c
/petsc/src/dm/tests/noflux_check.c
/petsc/src/dm/tests/output/ex41_1.out
/petsc/src/dm/tests/output/ex41_2.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/tests/output/noflux_check.out
/petsc/src/dm/tests/output/noflux_check_2.out
/petsc/src/dm/tests/output/noflux_check_4.out
/petsc/src/dm/tests/output/noflux_check_8.out
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/logging/handler/impls/default/logdefault.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/tests/ex71.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/ts/tests/ex30.c
/petsc/src/ts/tests/output/ex30_0.out
/petsc/src/ts/tests/output/ex30_3d.out
/petsc/src/ts/tests/output/ex30_simple.out
/petsc/src/ts/tests/output/ex30_simple_hdf5.out
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/dvec2.c
/petsc/src/vec/vec/impls/seq/ftn-kernels/makefile
/petsc/src/vec/vec/impls/seq/kokkos/veckok.kokkos.cxx
49d85fc314-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


/petsc/config/BuildSystem/config/setCompilers.py
/petsc/doc/build_c2html.py
/petsc/doc/build_c2html_file.py
/petsc/doc/build_classic_docs.py
/petsc/doc/build_man_examples_links.py
/petsc/doc/changes/dev.rst
/petsc/doc/conf.py
/petsc/doc/developers/style.rst
/petsc/doc/requirements.txt
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscmath.h
/petsc/include/petscts.h
/petsc/lib/petsc/conf/rules_doc.mk
/petsc/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkview.c
plexcreate.c
/petsc/src/dm/impls/swarm/tests/ex6.c
/petsc/src/dm/impls/swarm/tests/ex7.c
/petsc/src/dm/impls/swarm/tests/ex9.c
/petsc/src/dm/impls/swarm/tutorials/ex1.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/tests/ex2.c
/petsc/src/dm/tests/ex44.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/tests/ex57.c
/petsc/src/ksp/ksp/tests/ex63.cxx
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex87.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_utils.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/normal/normmh.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tutorials/ex4.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tutorials/ex25.c
/petsc/src/sys/classes/bm/makefile
/petsc/src/sys/objects/ftn-custom/zversionf.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/utils/ftn-custom/zarchf.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tests/ex30.c
/petsc/src/ts/tests/ex35.c
/petsc/src/ts/tutorials/ex50.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/is/is/tutorials/ex2f.F90
/petsc/src/vec/is/sf/impls/basic/sfpack.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/vscat.c
/petsc/src/vec/is/utils/hdf5/makefile
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/tests/ex57.cxx
/petsc/src/vec/vec/tests/ex58.c
/petsc/src/vec/vec/tests/ex59.cxx
/petsc/src/vec/vec/utils/vinv.c
b23db25310-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

DMSetFromOptions_Plex: fix prerefinement case for periodic meshes


/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/doc/changes/315.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/petsc.bib
/petsc/doc/requirements.txt
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscblaslapack.h
/petsc/include/petscdevice.h
/petsc/include/petscdevicetypes.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmplextransformtypes.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmstag.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscdualspace.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petsclogtypes.h
/petsc/include/petscmacros.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmath.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscspace.h
/petsc/include/petscstring.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/include/petscviewertypes.h
plexcreate.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/sys/classes/random/tests/ex3.c
/petsc/src/sys/utils/sortd.c
/petsc/src/sys/utils/sorti.c
5b2fd07612-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-gmsh-labels' into 'main'

Plex+Gmsh: Add -dm_plex_gmsh_use_generic to allow users to keep generic labels with regions

See merge request petsc/petsc!7178


plexgmsh.c
0629556011-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/fix-plex-lexi-order' into 'main'

Plex: Fix lexicographic closure ordering

See merge request petsc/petsc!7173


/petsc/.gitlab-ci.yml
/petsc/config/examples/arch-ci-linux-clang-ubsan.py
/petsc/doc/changes/315.rst
/petsc/doc/changes/dev.rst
/petsc/doc/faq/index.rst
/petsc/doc/manual/ksp.rst
/petsc/include/petsc/private/dmstagimpl.h
/petsc/include/petscerror.h
/petsc/include/petsctao.h
/petsc/lib/petsc/bin/maint/convertExamplesUtils.py
/petsc/lib/petsc/conf/rules_util.mk
/petsc/share/petsc/suppressions/lsan
/petsc/share/petsc/suppressions/ubsan
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/TAO.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petsctao.pxi
/petsc/src/dm/dt/fe/impls/basic/febasic.c
plex.c
plexceed.c
tutorials/ex8.c
tutorials/output/ex8_1d_q2.out
tutorials/output/ex8_2d_q1.out
tutorials/output/ex8_2d_q1_periodic.out
tutorials/output/ex8_2d_q1_q1d.out
tutorials/output/ex8_2d_q1d.out
tutorials/output/ex8_2d_q2.out
tutorials/output/ex8_2d_q2_p0.out
tutorials/output/ex8_2d_q2_p1d.out
tutorials/output/ex8_2d_q2_q1.out
tutorials/output/ex8_2d_q2_q1d.out
tutorials/output/ex8_2d_q3.out
tutorials/output/ex8_3d_q1.out
tutorials/output/ex8_3d_q1_periodic.out
tutorials/output/ex8_3d_q1_periodic_project.out
tutorials/output/ex8_3d_q2_periodic.out
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/stag/stag1d.c
/petsc/src/dm/impls/stag/stag2d.c
/petsc/src/dm/impls/stag/stag3d.c
/petsc/src/dm/impls/stag/tests/ex53.c
/petsc/src/dm/impls/stag/tests/output/ex53_1.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cupm/matseqdensecupm.hpp
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/dense/seq/dense.h
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex197.c
/petsc/src/mat/tests/ex261.c
/petsc/src/mat/tests/ex62.c
/petsc/src/mat/tests/ex94.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/sys/objects/device/tests/ex12.c
/petsc/src/sys/objects/device/tests/ex7.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/tutorials/eimex/ct_vdp_imex.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/vec/tests/ex63.c
/petsc/src/vec/vec/tests/ex64.c
2b20533311-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex+Gmsh: Add -dm_plex_gmsh_use_generic to allow users to keep generic labels with regions


plexgmsh.c
3c82e91411-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex ex8: Fixed face ordering for discontinuous fields


tutorials/ex8.c
tutorials/output/ex8_1d_q2.out
tutorials/output/ex8_2d_q1.out
tutorials/output/ex8_2d_q1_periodic.out
tutorials/output/ex8_2d_q1_q1d.out
tutorials/output/ex8_2d_q1d.out
tutorials/output/ex8_2d_q2.out
tutorials/output/ex8_2d_q2_p0.out
tutorials/output/ex8_2d_q2_p1d.out
tutorials/output/ex8_2d_q2_q1.out
tutorials/output/ex8_2d_q2_q1d.out
tutorials/output/ex8_2d_q3.out
tutorials/output/ex8_3d_q1.out
tutorials/output/ex8_3d_q1_periodic.out
tutorials/output/ex8_3d_q1_periodic_project.out
tutorials/output/ex8_3d_q2_periodic.out
5f82726a08-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Discontinuous fields do not have unknowns on faces/edges
- Fix tensor ordering to allow discontinuous simplex fields


plex.c
plexceed.c
/petsc/src/vec/is/section/interface/section.c
53df731d08-Jan-2024 Pierre Jolivet <pierre@joliv.et>

Fix "Extra spaces in test harness rules" in checkbadSource


/petsc/config/query_tests.py
/petsc/doc/developers/testing.rst
/petsc/doc/petsc.bib
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscblaslapack.h
/petsc/include/petscdevice.h
/petsc/include/petscdevicetypes.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmplextransformtypes.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmstag.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscdualspace.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petsclogtypes.h
/petsc/include/petscmacros.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmath.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscspace.h
/petsc/include/petscstring.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/include/petscviewertypes.h
/petsc/lib/petsc/conf/rules_util.mk
/petsc/src/dm/field/tutorials/ex1.c
/petsc/src/dm/impls/forest/tutorials/ex1.c
/petsc/src/dm/impls/network/tests/ex3.c
tests/ex18.c
tests/ex24.c
tests/ex31.c
/petsc/src/dm/impls/stag/tests/ex1.c
/petsc/src/dm/impls/stag/tests/ex13.c
/petsc/src/dm/impls/stag/tests/ex15.c
/petsc/src/dm/impls/stag/tutorials/ex4.c
/petsc/src/dm/impls/swarm/tests/ex2.c
/petsc/src/dm/tests/ex53.c
/petsc/src/dm/tests/ex6.c
/petsc/src/dm/tutorials/ex22.c
/petsc/src/ksp/ksp/tests/ex1.c
/petsc/src/ksp/ksp/tests/ex10.c
/petsc/src/ksp/ksp/tests/ex12f.F90
/petsc/src/ksp/ksp/tests/ex16f.F90
/petsc/src/ksp/ksp/tests/ex18.c
/petsc/src/ksp/ksp/tests/ex24.c
/petsc/src/ksp/ksp/tests/ex26.c
/petsc/src/ksp/ksp/tests/ex28.c
/petsc/src/ksp/ksp/tests/ex30.c
/petsc/src/ksp/ksp/tests/ex4.c
/petsc/src/ksp/ksp/tests/ex5f.F90
/petsc/src/ksp/ksp/tests/ex6.c
/petsc/src/ksp/ksp/tests/ex84.c
/petsc/src/ksp/ksp/tutorials/ex1.c
/petsc/src/ksp/ksp/tutorials/ex19.c
/petsc/src/ksp/ksp/tutorials/ex27.c
/petsc/src/ksp/ksp/tutorials/ex29.c
/petsc/src/ksp/ksp/tutorials/ex4.c
/petsc/src/ksp/ksp/tutorials/ex49.c
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex72.c
/petsc/src/ksp/ksp/tutorials/ex73.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
/petsc/src/mat/tests/bench_spmv.c
/petsc/src/mat/tests/ex112.c
/petsc/src/mat/tests/ex199.c
/petsc/src/mat/tests/ex51.c
/petsc/src/mat/tests/ex72.c
/petsc/src/mat/tests/ex75.c
/petsc/src/mat/tests/ex78.c
/petsc/src/mat/tests/ex84.c
/petsc/src/mat/tutorials/ex15.c
/petsc/src/snes/tests/ex241.cxx
/petsc/src/snes/tests/ex7.c
/petsc/src/snes/tutorials/ex1.c
/petsc/src/snes/tutorials/ex12.c
/petsc/src/snes/tutorials/ex15.c
/petsc/src/snes/tutorials/ex17.c
/petsc/src/snes/tutorials/ex19.c
/petsc/src/snes/tutorials/ex28.c
/petsc/src/snes/tutorials/ex3.c
/petsc/src/snes/tutorials/ex47cu.cu
/petsc/src/snes/tutorials/ex56.c
/petsc/src/snes/tutorials/ex62.c
/petsc/src/snes/tutorials/ex73f90t.F90
/petsc/src/sys/classes/random/tests/ex3.c
/petsc/src/sys/classes/viewer/tutorials/ex2.c
/petsc/src/sys/utils/sortd.c
/petsc/src/sys/utils/sorti.c
/petsc/src/tao/constrained/tutorials/tomographyADMM.c
/petsc/src/tao/leastsquares/tests/chwirut2.c
/petsc/src/tao/unconstrained/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/tutorials/eptorsion3.c
/petsc/src/tao/unconstrained/tutorials/minsurf2.c
/petsc/src/tao/unconstrained/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/tutorials/spectraladjointassimilation.c
/petsc/src/ts/tests/ex17.c
/petsc/src/ts/tests/ex6.c
/petsc/src/ts/tests/ex8.c
/petsc/src/ts/tutorials/advection-diffusion-reaction/ex1.c
/petsc/src/ts/tutorials/advection-diffusion-reaction/ex3.c
/petsc/src/ts/tutorials/advection-diffusion-reaction/ex4.c
/petsc/src/ts/tutorials/eimex/allen_cahn.c
/petsc/src/ts/tutorials/eimex/ct_vdp_imex.c
/petsc/src/ts/tutorials/ex11.c
/petsc/src/ts/tutorials/ex18.c
/petsc/src/ts/tutorials/ex1f.F90
/petsc/src/ts/tutorials/ex2.c
/petsc/src/ts/tutorials/ex20fwd.c
/petsc/src/ts/tutorials/ex20opt_ic.c
/petsc/src/ts/tutorials/ex20opt_p.c
/petsc/src/ts/tutorials/ex22.c
/petsc/src/ts/tutorials/ex29.c
/petsc/src/ts/tutorials/ex3.c
/petsc/src/ts/tutorials/ex31.c
/petsc/src/ts/tutorials/ex7.c
/petsc/src/ts/tutorials/ex8.c
/petsc/src/ts/tutorials/extchem.c
/petsc/src/ts/tutorials/optimal_control/ex1.c
/petsc/src/ts/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/tutorials/phasefield/heat.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex1f90.F90
/petsc/src/vec/is/sf/tests/ex2.c
/petsc/src/vec/is/tests/ex3.c
/petsc/src/vec/vec/tests/ex22.c
/petsc/src/vec/vec/tests/ex23.c
/petsc/src/vec/vec/tests/ex24.c
/petsc/src/vec/vec/tests/ex2k.c
/petsc/src/vec/vec/tests/ex38.c
80f88c6604-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jeremy/ceed-basis-update' into 'main'

ceed - use CEED_BASIS_NONE over CEED_BASIS_COLLOCATED

See merge request petsc/petsc!7125


/petsc/config/BuildSystem/config/packages/libceed.py
tests/ex42.c
/petsc/src/dm/interface/dmceed.c
942d34d003-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jolivet/fix-ubsan' into 'main'

Pacify UBSan

See merge request petsc/petsc!7158


/petsc/include/petscdt.h
/petsc/include/petscsys.h
/petsc/share/petsc/suppressions/ubsan
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fegeom.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/tests/ex7.c
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/network/network.c
plex.c
plexfem.c
plexgmsh.c
plexinterpolate.c
plexpreallocate.c
plexsection.c
plexsubmesh.c
tests/ex8.c
/petsc/src/dm/impls/swarm/swarmpic_sort.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/mat/graphops/coarsen/impls/hem/hem.c
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/seqhashmat.h
/petsc/src/mat/impls/aij/seq/symtranspose.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/aijbaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/sell/seq/sell.h
/petsc/src/mat/tests/ex152.c
/petsc/src/mat/tests/ex242.c
/petsc/src/mat/utils/freespace.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/tests/ex65.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/segbuffer.c
/petsc/src/vec/is/section/interface/sectionhdf5.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/vscat.c
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/pf/impls/string/cstringbase.template
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/projection.c
1f5f95ac03-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/fix-plex-create-and-view' into 'main'

Fixes for Plex creation and viewing

See merge request petsc/petsc!7159


/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/mmg.py
/petsc/config/BuildSystem/config/packages/parmmg.py
/petsc/config/PETSc/options/petscclone.py
/petsc/doc/build_man_pages.py
/petsc/doc/petsc.bib
/petsc/include/petscdm.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/ex1.c
/petsc/src/dm/dt/dualspace/impls/sum/dualspacesum.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/tests/ex4.c
plex.c
plexcreate.c
plexorient.c
plexrefine.c
plexsection.c
plexsubmesh.c
transform/impls/refine/sbr/plexrefsbr.c
transform/interface/plextransform.c
tutorials/ex1.c
tutorials/ex11.c
tutorials/output/ex1_filter_0.out
tutorials/output/ex1_submesh_0.out
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/ksp/ksp/tutorials/ex74.c
/petsc/src/ksp/ksp/utils/dm/dmproject.c
/petsc/src/ksp/ksp/utils/dm/makefile
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/snes/tutorials/ex19.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/utils/dm/dmadapt.c
/petsc/src/snes/utils/dm/dminterpolatesnes.c
/petsc/src/snes/utils/dm/makefile
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/tests/ex1f.F90
/petsc/src/ts/tests/ex26.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/utils/hdf5/hdf5io.c
/petsc/src/vec/is/utils/hdf5/makefile
85036b1503-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

DM: Correct misspelling


/petsc/include/petscdm.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/ex1.c
/petsc/src/dm/dt/dualspace/impls/sum/dualspacesum.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/tests/ex4.c
plex.c
plexorient.c
plexsection.c
plexsubmesh.c
transform/impls/refine/sbr/plexrefsbr.c
transform/interface/plextransform.c
tutorials/ex11.c
/petsc/src/dm/interface/dm.c
0cae813502-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex ex1: Make output optional


tutorials/ex1.c
tutorials/output/ex1_filter_0.out
tutorials/output/ex1_submesh_0.out
8e3a54c024-Dec-2023 Pierre Jolivet <pierre@joliv.et>

Sys: add PetscSafePointerPlusOffset() to pacify UBSan


/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/mmg.py
/petsc/config/BuildSystem/config/packages/parmmg.py
/petsc/config/PETSc/options/petscclone.py
/petsc/doc/build_man_pages.py
/petsc/include/petscdt.h
/petsc/include/petscsys.h
/petsc/share/petsc/suppressions/ubsan
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fegeom.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/tests/ex7.c
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/network/network.c
plex.c
plexfem.c
plexgmsh.c
plexinterpolate.c
plexpreallocate.c
plexsection.c
plexsubmesh.c
tests/ex8.c
/petsc/src/dm/impls/swarm/swarmpic_sort.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/ksp/tutorials/ex74.c
/petsc/src/ksp/ksp/utils/dm/dmproject.c
/petsc/src/ksp/ksp/utils/dm/makefile
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/mat/graphops/coarsen/impls/hem/hem.c
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/seqhashmat.h
/petsc/src/mat/impls/aij/seq/symtranspose.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/aijbaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/sell/seq/sell.h
/petsc/src/mat/tests/ex152.c
/petsc/src/mat/tests/ex242.c
/petsc/src/mat/utils/freespace.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/tutorials/ex19.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/utils/dm/dmadapt.c
/petsc/src/snes/utils/dm/dminterpolatesnes.c
/petsc/src/snes/utils/dm/makefile
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/tests/ex1f.F90
/petsc/src/sys/tests/ex65.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/segbuffer.c
/petsc/src/ts/tests/ex26.c
/petsc/src/vec/is/section/interface/sectionhdf5.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/vscat.c
/petsc/src/vec/is/sf/utils/sfutils.c
/petsc/src/vec/is/utils/hdf5/hdf5io.c
/petsc/src/vec/is/utils/hdf5/makefile
/petsc/src/vec/pf/impls/string/cstringbase.template
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/projection.c
4e22dd4c02-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Allow label creation and submesh selection during DMSetFromOptions()


plexcreate.c
e01335df02-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Allow user to set active label for transform
- Fix diagnostic view


plexrefine.c
bd3611e602-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Fix options processing


plex.c

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