DMPlex: Moved refinement functions into new file
- Reorganized DMPlex header

DMPlex ex4: Added 3D test
- Currently fails

DMPlex: Remove some dead code

DMPlex ex3: Use new tabulation interface

PetscFE: FEM Jacobian computation working, and now cache default tabulation
- Added PetscFEIntegratJacobianChunk()
- Changed interface in DMPlexComputeJacobianFEM()
- Changed signature of integrateJa

PetscFE: FEM Jacobian computation working, and now cache default tabulation
- Added PetscFEIntegratJacobianChunk()
- Changed interface in DMPlexComputeJacobianFEM()
- Changed signature of integrateJacobianFEM in DMPlex
- Added DMPLEX_JacobianFEM event
- Now PetscFE caches default tabulation

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DMPlex ex3: Now use PetscDualSpaceCreateReferenceCell()

PetscFE: Large reorganization of FEM dispatch
- WARNING: Now DMPlex and PetscFE have a circular dependence. We need to move the FEM methods to PetscFE
- Changed FEMIntegrateResidualBatch() from to Pe

PetscFE: Large reorganization of FEM dispatch
- WARNING: Now DMPlex and PetscFE have a circular dependence. We need to move the FEM methods to PetscFE
- Changed FEMIntegrateResidualBatch() from to PetscFEIntegrateResidualChunk()
- Changed DMPlexComputeResidualFEM() to use new interface
- Changed signature of f_k and g_kl functions
- Added DMPlexResidualFEM event
- Put PetscQuadrature and PetscCellGeometry
- Moved and changed PetscFEM structure

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DMPlex ex3: Should run without code generation

DMPlex ex3: Added PetscFE derivatives, protected Generator stuff

DMPlex ex3: Replacing FIAT generated code with PetscFE

DMPlex ex3: Use new PetscFE interface, fixed leaks

DMPlex ex3: We now reproduce all the FIAT input using PetscFE
- Added -num_comp option

DMPlex ex3: Added 3D reference cell

DMPlex ex5: Added test for 2 face cohesive submesh
- Fixed old tests for cohesive cell orientation

DMPlex: Put in depth label optimization

DMPlex: Fix flipping of fault normal

DMPlex: We label cells with only vertices on the fault, but they have no cone replacement

DMPlex: Fix translation to cohesive edges in 3D
- They are labeled by the vertices they connect

DMPlex: Added flip argument to DMPlexLabelCohesiveComplete() to reverse submesh normal
- Fixed ex5 test

DMPlex ex5: Fixed existing tests and added two cohesive cell test
- Fixed tests for new cohesive cell orientation

DMPlex: Propagate orientation information to the submesh properly

DMPlex: Orientation of cohesive cell should come from face to which it is attached

DMPlex: Added subdm argument to DMPlexLabelCohesiveComplete()
- Use the subdm for orientation information so we replace vertices all on the same side

DMPlex: Fix DMPlexOrient() for submeshes
- Need to also reverse cone orientation of cells attached to fault faces when we flip them

DMPlex ex3: Added PetscFE stuff to function representation test