DMPlex ex9: Added ability to reuse array in VecGetClosure()

DMPlex: Allow DMPlexVecGetClosure() to take an input array

DMPlex: Now geometry tests can take an input mesh
- Use Exodus format
- Input all mesh data in options
- Made builder runs for 3 hexes

DMPlex: Test ex8 now runs interpolated tests separately
- Added new builder runs

DMPlex: Fixed creation of PetscSF in DMPlexCreateCohesiveSubmesh_Uninterpolated()
- Could not assume that original owner of subvertex owned it in submesh because it might have no subcells
- Needed to

DMPlex: Fixed creation of PetscSF in DMPlexCreateCohesiveSubmesh_Uninterpolated()
- Could not assume that original owner of subvertex owned it in submesh because it might have no subcells
- Needed to redetermine ownership of subpoints

show more ...

DMPlex: Added FVM geometry to interpolation test

DMPlex: FVM geometry was ignoring face orientation

Plex VTK: Handle missing submesh pieces in parallel

DMPlex: Initializeremote locations when calculating SF for submesh

Merge branch 'barry/fix-PetscObjectPrintClassNamePrefixType'

* barry/fix-PetscObjectPrintClassNamePrefixType:
update tests of src/mat/examples/tests/ex136.c
Use classname in object for object na

Merge branch 'barry/fix-PetscObjectPrintClassNamePrefixType'

* barry/fix-PetscObjectPrintClassNamePrefixType:
update tests of src/mat/examples/tests/ex136.c
Use classname in object for object name when calling PetscObjectPrintClassNamePrefixType() instead of some string with less precise name passed in

Conflicts:
src/snes/interface/snes.c

show more ...

DMPlex: FIxed hang in DMPlexCreateCohesiveSubmesh()

DMPlex: Fix bug in specialization of DMPlexVecGetClosure()

DMPlex: Bug fix for special case in DMPlexVecGetClosure()

DMPlex: Added optimization for depth 1 DMPlexVecGetClosure()

DMPlex ex9: Does not fail by default
- Will turn back on failure once we calculate variance

DMPlex: Now a label can be used to restrict the points for a cohesive submesh
- Added label and value arguments to DMPlexCreateCohesiveSubmesh()

DMPlex: Added PetscSF creation to DMPlexCreateCohesiveSubmesh_Uninterpolated()
- Added DMPlexFilterPoint_Internal()
- Still need this for the interpolated variant

DMPlex: Remove dead code

DMPlex: Removed aggressive checks for cohesive cells
- How should we handle extraction in parallel?

DMPlex: Better fix for distribution of hybrid bounds
- Bounds are now computed from the reordering at distribution time
- Still incomplete since we need to compute the interpolated bounds after inter

DMPlex: Better fix for distribution of hybrid bounds
- Bounds are now computed from the reordering at distribution time
- Still incomplete since we need to compute the interpolated bounds after interpolation

show more ...

DMPlex: Temporary fix for handling hybrid meshes in parallel
- Try to compute the hybrid structure
- Should really send it out with Distribute()

DMPlex: Allow submesh creation with empty mesh and empty label

DMPlex: Allow DMPlexOrient() of empty mesh

DMPlex: Move Mat option set after preallocation
- SEGV on SBAIJ if we do not do this

DMPlex: Update calls to DMPlexMatSetClosure() to eliminate default arguments